mRNA_S-dermatodea_contig11361.880.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11361.880.1
Unique NamemRNA_S-dermatodea_contig11361.880.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11361.880.1 vs. uniprot
Match: A0A6H5JKC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKC1_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.770e-5
Identity = 30/62 (48.39%), Postives = 37/62 (59.68%), Query Frame = -2 
Query:  129 DSQTKAVAILGDKKWPEKARRD-GRQDTQAIHFCATLWQSRTEGRIGHRRLTDRSCGNNAPS 311
            D++   VA+LG ++W EKA RD  R D     F + LWQSR E       + DRSCGNNAPS
Sbjct:  240 DTKESTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKE----RLAIGDRSCGNNAPS 297
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11361.880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JKC1_9PHAE1.770e-548.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11361contigS-dermatodea_contig11361:348..890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size544
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924199.5030546-CDS-S-dermatodea_contig11361:347..7161622924199.5030546-CDS-S-dermatodea_contig11361:347..716Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11361 348..716 +
1694079087.0940669-CDS-S-dermatodea_contig11361:347..7161694079087.0940669-CDS-S-dermatodea_contig11361:347..716Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11361 348..716 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924199.519208-UTR-S-dermatodea_contig11361:716..8901622924199.519208-UTR-S-dermatodea_contig11361:716..890Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11361 717..890 +
1694079087.1025627-UTR-S-dermatodea_contig11361:716..8901694079087.1025627-UTR-S-dermatodea_contig11361:716..890Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11361 717..890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11361.880.1prot_S-dermatodea_contig11361.880.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11361 348..716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11361.880.1

>prot_S-dermatodea_contig11361.880.1 ID=prot_S-dermatodea_contig11361.880.1|Name=mRNA_S-dermatodea_contig11361.880.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=123bp
ASSQRGWGRGGGGERRAVRSHSCFACLIVAVKTFTFHHSCLREDGALFPQ
DRSVNRRWPILPSVLLCHKVAQKWIACVSCLPSLLAFSGHFLSPSIATAF
VWLSGGGESHNARSIFLKSLFF*
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mRNA from alignment at S-dermatodea_contig11361:348..890+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11361.880.1 ID=mRNA_S-dermatodea_contig11361.880.1|Name=mRNA_S-dermatodea_contig11361.880.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at S-dermatodea_contig11361:348..890+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAAGTTCACAGAGAGGATGGGGGAGGGGGGGAGGGGGGGAGAGGAGGGC
CGTCCGGAGTCACTCATGCTTTGCATGCCTTATTGTAGCTGTTAAGACCT
TTACCTTTCACCACTCGTGCTTGAGAGAGGACGGAGCATTGTTCCCACAG
GATCGGTCGGTCAATCGCCGATGGCCAATCCTTCCTTCCGTCCTGCTCTG
CCACAAGGTGGCGCAAAAGTGGATTGCCTGTGTATCCTGTCTACCATCCC
TTCTCGCCTTCTCAGGCCACTTCTTATCCCCCAGTATAGCTACCGCCTTT
GTCTGGCTGTCGGGGGGGGGGGAATCACACAACGCTCGCTCTATATTTCT
GAAATCTTTATTTTTTTAGGAATCACACGAGGTACTCGTGAGTGTGAGTT
TCCGCGTTGTAGGGTTTTGCGACTATTAATATGTAGAGTAGATAAAACAT
AAACAAACGCTAAAAAGCGACAAGACTTTACCGCTACCCTGAAAAATAAA
ATAACGTGCCTCCCATCGCCGCTTGCTTCAAAAACGGGACCTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11361:348..890+

>mRNA_S-dermatodea_contig11361.880.1 ID=mRNA_S-dermatodea_contig11361.880.1|Name=mRNA_S-dermatodea_contig11361.880.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at S-dermatodea_contig11361:348..890+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAAGTTCACAGAGAGGATGGGGGAGGGGGGGAGGGGGGGAGAGGAGGGC
CGTCCGGAGTCACTCATGCTTTGCATGCCTTATTGTAGCTGTTAAGACCT
TTACCTTTCACCACTCGTGCTTGAGAGAGGACGGAGCATTGTTCCCACAG
GATCGGTCGGTCAATCGCCGATGGCCAATCCTTCCTTCCGTCCTGCTCTG
CCACAAGGTGGCGCAAAAGTGGATTGCCTGTGTATCCTGTCTACCATCCC
TTCTCGCCTTCTCAGGCCACTTCTTATCCCCCAGTATAGCTACCGCCTTT
GTCTGGCTGTCGGGGGGGGGGGAATCACACAACGCTCGCTCTATATTTCT
GAAATCTTTATTTTTTTAGGCAAGTTCACAGAGAGGATGGGGGAGGGGGG
GAGGGGGGGAGAGGAGGGCCGTCCGGAGTCACTCATGCTTTGCATGCCTT
ATTGTAGCTGTTAAGACCTTTACCTTTCACCACTCGTGCTTGAGAGAGGA
CGGAGCATTGTTCCCACAGGATCGGTCGGTCAATCGCCGATGGCCAATCC
TTCCTTCCGTCCTGCTCTGCCACAAGGTGGCGCAAAAGTGGATTGCCTGT
GTATCCTGTCTACCATCCCTTCTCGCCTTCTCAGGCCACTTCTTATCCCC
CAGTATAGCTACCGCCTTTGTCTGGCTGTCGGGGGGGGGGGAATCACACA
ACGCTCGCTCTATATTTCTGAAATCTTTATTTTTTTAG
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