mRNA_S-dermatodea_contig11359.876.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11359.876.1
Unique NamemRNA_S-dermatodea_contig11359.876.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11359.876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11359contigS-dermatodea_contig11359:1858..4030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924199.2827954-CDS-S-dermatodea_contig11359:1857..19951622924199.2827954-CDS-S-dermatodea_contig11359:1857..1995Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11359 1858..1995 +
1694079086.9312801-CDS-S-dermatodea_contig11359:1857..19951694079086.9312801-CDS-S-dermatodea_contig11359:1857..1995Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11359 1858..1995 +
1622924199.2954175-CDS-S-dermatodea_contig11359:3875..40281622924199.2954175-CDS-S-dermatodea_contig11359:3875..4028Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11359 3876..4028 +
1694079086.94699-CDS-S-dermatodea_contig11359:3875..40281694079086.94699-CDS-S-dermatodea_contig11359:3875..4028Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11359 3876..4028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11359.876.1prot_S-dermatodea_contig11359.876.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11359 1858..4028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11359.876.1

>prot_S-dermatodea_contig11359.876.1 ID=prot_S-dermatodea_contig11359.876.1|Name=mRNA_S-dermatodea_contig11359.876.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=97bp
LRKQRRLSCEQAHERDAAWRPTRGCALRHTIDTKPSFQRAELANTQAVKM
AVHDSILPANNSNGNRATKPQRRHAGFPPKLRPPHPKVYTLPRPRSS
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mRNA from alignment at S-dermatodea_contig11359:1858..4030+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11359.876.1 ID=mRNA_S-dermatodea_contig11359.876.1|Name=mRNA_S-dermatodea_contig11359.876.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2173bp|location=Sequence derived from alignment at S-dermatodea_contig11359:1858..4030+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTCGCAAGCAAAGGAGATTGTCGTGTGAGCAAGCCCATGAAAGAGATGC
TGCGTGGCGCCCGACGCGTGGCTGCGCTTTGCGCCATACTATCGATACAA
AGCCAAGCTTTCAACGCGCCGAGCTCGCAAACACCCAGGTGTGAACGACC
GTATCGATGACATGAAGCATCAGAGGAAGAGATTTCGTTGTTGCTGACTG
GACTGACCTTCCTTGTCACATGTGCATCTCGCTGCAAGTAGCAAGTACAG
AGGCCCTGCTGTGATTTCTAGGCGTCCTCCCTCAGGCTATTTCTCGCGAT
AAACATCTCATGGTCAGTTCTCTCAGCTAAGGGCCGTCCAGTAGAGCTCT
ACGGAGTGGAGGTGTCTGCGAAGTAAAGCTCGACGATCGATCTGTACAGT
ATTCGTCAGTTCGAATTTGAAACCAGCGGGCACTGCCTTTGTGATCCTAA
AGAATACTCTGCGTCGTCGCATGCAGGCCCGTCTGTGCCCCGTGCGCTCA
TGGCCCTGCAGCACACATCGATGGCGCTGAAGGCAGTGTCCTCCTTCAGG
CTATTTATCGCGAGAAATATCTCATGGTCAGTTCCCTCAGCTATGGGCCG
TCCAGTAGAGCTCTACGGAGCGGAGGTGTCTGCGAAGAAAAGCTCGACGA
TCGATCTGTACAGTAGTCGTCAGTTCGAATTTGAAACCAGCGGGCACTGC
CTTTGTGATCCTAAAGAATACTCTGCGTCGTCGCATGCAGGCCCGTCTGT
GCCCCGTGCGCTCATGGCCCTGCAGCACACATCGATGGCGCTGAAGGCAG
TGTCCTCCTTCAGGCTATTTCTCGCGAGAAATATCTCATGGTCAGTTCTC
TCAGCTATGGACCGTCCAGTAGAGCTCTATGGAGCGGAGGTGTCTGCGAA
GTAAAGCTAGACGATCGATCTTCACAGTAGTCGTCAGTTCGAATTTGAAA
CTATCGGGCACTGCCTTTGTGGTCCTAAAGAATACTGTGCGTCGTCGCAT
GCAGGCCCGTGTGCCCCGTGCGATCATGGCTCTGCAGCACACATCGATGG
CGCTGAAGGCAGTCACGAGACACGGCAGTTTGTCCTGTATTTAGACAGCT
ATGCATGGCTCCCGGGATACACGTAGGTGTGCCTGTCGGGTCTGTACAGG
TTAGCTGGACTACTGTTTGTATTCAGCTCAGATGCGCTCTCTGCCCTAAC
CCTAACGCTTATGTATGATACCGCGATCACGATGGTCTGACAAGGTCCAT
GGTGATCGATCAAACGTTAGACAGAGTTTCCACCGCTGTCTGAAACAACC
AGATCGGCTTTGTATCCGGTGCGGGGCGTTGGCCTGCCGCGCTTGCGGCG
ATGGGCCTCTTGACAGCAGCCGACTCGGACAGTACTGTATATGCTAAGTA
TTCCTAGACACAACTGCTCAACAATCATACTTCACCTACTCTCAGATATA
ATATATAGTTTCGTCTACAACAAAGTCCACCCGGGTCCTGTCCCGATGAG
TTGTGGGTTGTGCACTTTCTGTGTTCTGTTTCTTTATAAAAAATGTGTAC
AGCATATCTACTTGTGGACCTCGGTGGAAGGACACCTAATGGTCGGCGTG
CTACTTATCACCTCGGTGTAAAGACACCTCATCAGTTGGGCGACGTGCTA
ATTATCTTGCTGTCGCATTGGAGAGACGCATGCATTAGTGCTTATTATAG
TCGAAAGTATTTTCCACTATTGATATGGGTCAAGCCCAGGCTCCCCCGTC
TCCTACGACTAATTTTCGGCCGCTTGGCTGCTACGCTGGTGCGCTGGGGT
TTCTCGTATAGCATAGGACATGCAGCTGCATGTTATCTCACACGCTCGTT
CGGCACCCATCTCAACCTTGTTCGCGTCTTGGGGGGGGGGGCATCAAGCA
TTCGAAAAGGGGTATGGGACCGCCTCCACTTCTACTGGACAACTCCGGAA
TCAGACGTTTGAGTCCCTCTACAAGTATTGACAGCGCCCCCCCCCCTCCC
CCCCCTTCCTACCAGCAGGCAGTCAAGATGGCGGTCCACGACAGCATCCT
CCCAGCCAACAACAGCAACGGCAACCGCGCGACCAAACCGCAGCGACGCC
ACGCCGGATTTCCCCCAAAGCTCCGCCCCCCGCACCCGAAGGTCTACACG
CTCCCCCGCCCTCGCAGCAGCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11359:1858..4030+

>mRNA_S-dermatodea_contig11359.876.1 ID=mRNA_S-dermatodea_contig11359.876.1|Name=mRNA_S-dermatodea_contig11359.876.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at S-dermatodea_contig11359:1858..4030+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTCGCAAGCAAAGGAGATTGTCGTGTGAGCAAGCCCATGAAAGAGATGC
TGCGTGGCGCCCGACGCGTGGCTGCGCTTTGCGCCATACTATCGATACAA
AGCCAAGCTTTCAACGCGCCGAGCTCGCAAACACCCAGCTTCGCAAGCAA
AGGAGATTGTCGTGTGAGCAAGCCCATGAAAGAGATGCTGCGTGGCGCCC
GACGCGTGGCTGCGCTTTGCGCCATACTATCGATACAAAGCCAAGCTTTC
AACGCGCCGAGCTCGCAAACACCCAGGCAGTCAAGATGGCGGTCCACGAC
AGCATCCTCCCAGCCAACAACAGCAACGGCAACCGCGCGACCAAACCGCA
GCGACGCCACGCCGGATTTCCCCCAAAGCTCCGCCCCCCGCACCCGAAGG
TCTACACGCTCCCCCGCCCTCGCAGCAGCGCAGTCAAGATGGCGGTCCAC
GACAGCATCCTCCCAGCCAACAACAGCAACGGCAACCGCGCGACCAAACC
GCAGCGACGCCACGCCGGATTTCCCCCAAAGCTCCGCCCCCCGCACCCGA
AGGTCTACACGCTCCCCCGCCCTCGCAGCAGC
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