mRNA_S-dermatodea_contig11357.875.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11357.875.1
Unique NamemRNA_S-dermatodea_contig11357.875.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11357.875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11357contigS-dermatodea_contig11357:390..974 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size409
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11357.875.1prot_S-dermatodea_contig11357.875.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11357 397..788 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924199.2126198-UTR-S-dermatodea_contig11357:389..3961622924199.2126198-UTR-S-dermatodea_contig11357:389..396Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11357 390..396 +
1694079086.8846712-UTR-S-dermatodea_contig11357:389..3961694079086.8846712-UTR-S-dermatodea_contig11357:389..396Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11357 390..396 +
1622924199.2460406-UTR-S-dermatodea_contig11357:788..9741622924199.2460406-UTR-S-dermatodea_contig11357:788..974Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11357 789..974 +
1694079086.9153204-UTR-S-dermatodea_contig11357:788..9741694079086.9153204-UTR-S-dermatodea_contig11357:788..974Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11357 789..974 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924199.2244387-CDS-S-dermatodea_contig11357:396..4451622924199.2244387-CDS-S-dermatodea_contig11357:396..445Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11357 397..445 +
1694079086.8951163-CDS-S-dermatodea_contig11357:396..4451694079086.8951163-CDS-S-dermatodea_contig11357:396..445Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11357 397..445 +
1622924199.2341113-CDS-S-dermatodea_contig11357:621..7881622924199.2341113-CDS-S-dermatodea_contig11357:621..788Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11357 622..788 +
1694079086.905495-CDS-S-dermatodea_contig11357:621..7881694079086.905495-CDS-S-dermatodea_contig11357:621..788Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11357 622..788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11357.875.1

>prot_S-dermatodea_contig11357.875.1 ID=prot_S-dermatodea_contig11357.875.1|Name=mRNA_S-dermatodea_contig11357.875.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=72bp
MNWSASGQKAGGKKRTGGEEWPKNLGPHRRGPGVNRLLVFAEGGGRFRYL
FSSYGARVQRVVSFVESAVWS*
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mRNA from alignment at S-dermatodea_contig11357:390..974+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11357.875.1 ID=mRNA_S-dermatodea_contig11357.875.1|Name=mRNA_S-dermatodea_contig11357.875.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=585bp|location=Sequence derived from alignment at S-dermatodea_contig11357:390..974+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTGCGCATGAATTGGAGCGCGTCGGGTCAGAAGGCCGGCGGCAAGAAGA
GAACGGGTGAATTACTGTCCAAGGGAAGGGGAGAGGGGGGGGGGGGGGGG
GGAGGGGGTTTTTTTTTTTTTTCAAAAAGCGGGAAATCGGCAGTGGACAA
ATAGCAAGACCAAAATATACACTGCGTTTAATAGTATTGACTGATTGATA
ACTTTATCGACTTTACTGATGATGGTATGCAGGTGGCGAGGAATGGCCGA
AAAATCTGGGGCCTCACCGCCGAGGGCCTGGAGTGAACAGGCTCCTGGTG
TTTGCGGAGGGCGGGGGGCGTTTCAGGTACTTGTTTTCAAGTTATGGCGC
CCGAGTCCAGCGAGTAGTGTCTTTTGTGGAGAGCGCTGTCTGGAGTTGAC
ACTCACATGTACGTTTCCCCTGGGTTTTTTTCGCGTTTGATACACTGGTT
GGTAGGTAGGAGGGAAGGAAGGAGGGAAGTAAGGAAGGGTCGCCTGCGAT
GAACTTGTTGTTTTACAAAACAATTTGCGGGGATTGTAGCGATTCAATGC
GTTGGAGGGTAGTCGCTGGCACTCCCACGGACGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11357:390..974+

>mRNA_S-dermatodea_contig11357.875.1 ID=mRNA_S-dermatodea_contig11357.875.1|Name=mRNA_S-dermatodea_contig11357.875.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at S-dermatodea_contig11357:390..974+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAATTGGAGCGCGTCGGGTCAGAAGGCCGGCGGCAAGAAGAGAACGGA
TGAATTGGAGCGCGTCGGGTCAGAAGGCCGGCGGCAAGAAGAGAACGGGT
GGCGAGGAATGGCCGAAAAATCTGGGGCCTCACCGCCGAGGGCCTGGAGT
GAACAGGCTCCTGGTGTTTGCGGAGGGCGGGGGGCGTTTCAGGTACTTGT
TTTCAAGTTATGGCGCCCGAGTCCAGCGAGTAGTGTCTTTTGTGGAGAGC
GCTGTCTGGAGTTGAGTGGCGAGGAATGGCCGAAAAATCTGGGGCCTCAC
CGCCGAGGGCCTGGAGTGAACAGGCTCCTGGTGTTTGCGGAGGGCGGGGG
GCGTTTCAGGTACTTGTTTTCAAGTTATGGCGCCCGAGTCCAGCGAGTAG
TGTCTTTTGTGGAGAGCGCTGTCTGGAGTTGA
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