mRNA_S-dermatodea_contig11356.874.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11356.874.1 vs. uniprot
Match: D8LND0_ECTSI (Replication factor C subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LND0_ECTSI) HSP 1 Score: 535 bits (1378), Expect = 1.980e-179 Identity = 311/429 (72.49%), Postives = 340/429 (79.25%), Query Frame = 1
Query: 1 LRQYGAKVTGSVSSRTTYLLLGSVLDDGRAPEEGSKYKKAQQHKTKVVDEDDLFKMLRDSNPGGKSPPSELKPGAXXXXXXXXXXGEKPLVANPYA-KAAVVNPYGAKKPAVGGKXXXXXXXXAAAVGGXXGRASSGKSPAKV------VRRVVAASALGAAHSSAPGQMWVDKYKPRSSSEVIGHSGQVKKLRVWLENWERWHLGNTGVKPPTGKENPGARAALLSGVPGVGKSSTANLVAKEMGYHVMELNASDTRNKNSLSTELASVIGNQVLSFMPGGXXXXXXXXXXXXXXXFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSKVPIIAICNDRQHQKIRSLVNHCYDLRFSRPQKATIAKRVKAIATMEGMEVDENAAEMLVEANGNDIRQVLHAMQMWSRKSSKMTYMNLKGGISSIEKDK 1266
++QYG KVTG+VSSRT +L+LG+VLDDGR PEEGSKYK+A KT+++DED LFKMLRDSNP G+ PP XXXXXXXX KP VANPY K AVVNPY A A K AA + G G+A +GKSPA + AA PGQMWVDKYKP SSS VIGH+GQVKKL+VWL+NWE WHL G K PTGK+NPGARAALLSGVPGVGKSSTA LVA+EMGYHVMELNASDTR+K SLS ELASVIGN+VLSF GXXXXXXXX FRKQLVVMDEVDGMGGSDRGGIQELILLIKKS+VPIIAICNDRQHQKIRSLVNHCYDLRF+RPQK TIAKRVKA+A MEGM+VD+NAAEMLVEANGNDIRQVLHA+QMWSRKSSKMTYMNLKGGIS+IEKDK
Sbjct: 280 IKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTRIIDEDGLFKMLRDSNPKGQQPPGXXX---XXXXXXXXAPASKPAVANPYQPKKAVVNPY-ASMQAAAKKKAAVNPFGAAVIAGGKGKAPAGKSPAGTSXXXXXXXXXXXGARAAAAVRQNPGQMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHL--KGAKAPTGKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKVLSFTANGXXXXXXXXG------FRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIRSLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQVLHALQMWSRKSSKMTYMNLKGGISAIEKDK 696
BLAST of mRNA_S-dermatodea_contig11356.874.1 vs. uniprot
Match: A0A1R2D148_9CILI (Replication factor C subunit 1 n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2D148_9CILI) HSP 1 Score: 265 bits (677), Expect = 3.750e-77 Identity = 164/431 (38.05%), Postives = 236/431 (54.76%), Query Frame = 1
Query: 1 LRQYGAKVTGSVSSRTTYLLLGSVLDDGRAPEEGSKYKKAQQHKTKVVDEDDLFKMLRDSNPGGKSPPSELKPGAXXXXXXXXXXGEKPLVANPYAKAAVVNPYGAKKPAVGGKXXXXXXXXAAAVGGXXGRASSGKSPAKVVRRVVAASALGAAHSSAPGQMWVDKYKPRSSSEVIGHSGQVKKLRVWLENWERWHLGNTGVKPPT----GK----ENPGARAALLSGVPGVGKSSTANLVAKEMGYHVMELNASDTRNKNSLSTELASVIGNQVLSFMPGGXXXXXXXXXXXXXXXFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSKVPIIAICNDRQHQKIRSLVNHCYDLRFSRPQKATIAKRVKAIATMEGMEVDENAAEMLVEANGNDIRQVLHAMQMWSRKSSKMTYMNLKGGISSIEKDKV 1269
+++YG KVTG+VS +TTYL+ G L+DGR G+KYKKA++ T ++DEDD+ KML + KS SE+ + K + N +NP KK +V + ++W DKYKP+S ++IG++ ++KL+ WL++WE L N +KP + GK +N A A LLSG PG+GK++ A LVA GY VMELNASDTRNK++L L S + L+ K L++MDE+DGM G DRGG LI +IK +K+PII ICNDRQ K++SL+N+CYDL+F++P K + KR+ I +EG++++ NA E +VE++GNDIRQVL A MW+R +S M+YM K + ++ KD+V
Sbjct: 207 IKEYGGKVTGNVSRKTTYLIHGYKLEDGREYTAGNKYKKAKELGTHILDEDDIKKMLEECQEMKKSEISEIDEESDHFQL-------KTTLKNDIVNK--INPVQTKKFSVEDQKLT--------------------------------------------ELWTDKYKPKSLDDMIGNTSIIQKLQEWLDDWESVVLNNN-IKPQSPSRNGKNDASKNLNAAAVLLSGPPGIGKTTAARLVANLYGYRVMELNASDTRNKSALLNPLLSSSKSHCLT----------------NKGDIVKNLIIMDEIDGMSGGDRGGTTALIQVIKTTKIPIICICNDRQSPKVKSLLNYCYDLKFAKPNKLQVVKRINDILKIEGLDIEPNAIEFVVESSGNDIRQVLTAFDMWARTNSGMSYMKAKQNLKTMGKDQV 567
BLAST of mRNA_S-dermatodea_contig11356.874.1 vs. uniprot
Match: A0A1Z5JWY4_FISSO (Replication factor C subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JWY4_FISSO) HSP 1 Score: 265 bits (677), Expect = 1.700e-76 Identity = 169/430 (39.30%), Postives = 236/430 (54.88%), Query Frame = 1
Query: 1 LRQYGAKVTGSVSSRTTYLLLGSVLDDGRAPEEGSKYKKAQQHKTKVV--DEDDLFKMLRDSNPGGKSPPSELKPGAXXXXXXXXXXGEKPLVANPYAKAAV---VNPYGAKKPAVGGKXXXXXXXXAAAVGGXXGR--ASSGKSPAKVVRRVVAASALGAAHSSAPGQMWVDKYKPRSSSEVIGHSGQVKKLRVWLENWERWHLGNTGVKPPTGKENPGARAALLSGVPGVGKSSTANLVAKEMGYHVMELNASDTRNKNSLSTELASVIGNQVLSFMPGGXXXXXXXXXXXXXXXFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSKVPIIAICNDRQHQKIRSLVNHCYDLRFSRPQKATIAKRVKAIATMEGMEVDENAAEMLVEANGNDIRQVLHAMQMWSRKSSKMTYMNLKGGISSIEKDKV 1269
++ G +VT +VSS+T YL++G+VL+DGR ++GSKYKKA + K+ V+ E+ + +L+ + P + +NPY+ A VNPY AKK + A A GR A + S + A LG S +WVDKYKP S+ E++G+ VKKL WL +WER N +AALLSG PG+GK++TA LVAKE G V+E NASD R+K +L+ + G+Q + F +K+ ++MDEVDGMG DR G+ ELI +IKKSKVPI+ ICNDRQ QK++SL+ +C DLR+ RP K IA R + EG+ V++NAAE L E+ GNDIRQVL+ +QMWSRK + + + +LK + I KD +
Sbjct: 214 VKTLGGRVTTAVSSKTDYLVVGNVLEDGRDYQQGSKYKKAMELKSVVIVRGEELFYGLLQTYH-------DLCGPVVAPAVASTLVSAPPSVPSNPYSTATAATKVNPY-AKKAS--------NPYAATAKANSYGRKAAPAMTSVTSNTTTMAVAPVLGDTSS----MLWVDKYKPTSAREILGNQDAVKKLTQWLNSWERIFNTTQNSNKTFSAPNGPWKAALLSGPPGIGKTTTATLVAKEAGRDVLEFNASDVRSKKALTNVFGDITGSQTIDFTTQA----------------KKRCIIMDEVDGMGAGDRSGMAELIQMIKKSKVPIVCICNDRQSQKLKSLIPYCLDLRYRRPTKNVIANRAVQVGQQEGLNVEQNAAEALAESCGNDIRQVLNCLQMWSRKGNSLKFKDLKERANDINKDDI 607
BLAST of mRNA_S-dermatodea_contig11356.874.1 vs. uniprot
Match: B5Y507_PHATC (Replication factor C subunit 1 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y507_PHATC) HSP 1 Score: 263 bits (673), Expect = 6.560e-76 Identity = 172/443 (38.83%), Postives = 235/443 (53.05%), Query Frame = 1
Query: 1 LRQYGAKVTGSVSSRTTYLLLGSVLDDGRAPEEGSKYKKAQQHKTKVVD-EDDLFKMLRDSNPGGKSPPSELKPG-AXXXXXXXXXXGEKPLVANPYAKAAV---------------VNPYGAKKPAVGGKXXXXXXXXAAAVGGXXGRASSGKSPAKVVRRVVAASALGAAHSSAPGQMWVDKYKPRSSSEVIGHSGQVKKLRVWLENWERWHLGNTGVKPPTGKENPGARAALLSGVPGVGKSSTANLVAKEMGYHVMELNASDTRNKNSLSTELASVIGNQVLSFMPGGXXXXXXXXXXXXXXXFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSKVPIIAICNDRQHQKIRSLVNHCYDLRFSRPQKATIAKRVKAIATMEGMEVDENAAEMLVEANGNDIRQVLHAMQMWSRKSS---KMTYMNLKGGISSIEKDKV 1269
++ G ++TG+VSS T YL++G L+DGR EGSKYK+A Q T +V E+ + +L+ N E+ G A E PL ANPYAK A PY + KP SPA++ V + A SS +WVDKYKP S E++G++ VKKL +WL +WE+ + V N +AALLSG PG+G + +VAKE G V+E NASD R+K ++ ++ + G+ L F K+ ++MDEVDGMG DR G+ ELI +IKKS+VPII ICNDRQ QK++SL+ +C DLR+ RP K+ IA R IA EG V++NAAE + E+ GND+RQVL+ MQMW+ SS +MTY +LK SSI KD++
Sbjct: 224 VKTLGGRITGAVSSLTNYLVVGEELEDGRVYTEGSKYKRAVQEGTHIVQGEEAFYGLLQQYND------KEIAAGNALLNTAPKLSQSEAPLAANPYAKKAPNXXXXXXXXXXXXVKAKPYTSGKP----------------------------SPAEISSPVD----IKADRSSGANLLWVDKYKPTRSGEILGNAESVKKLGLWLSSWEQKFNNSKAVGKGVANPNDRFKAALLSGPPGIGTT----IVAKESGRDVIEFNASDVRSKKAIKDDMGDITGSYTLEFGKPAINEKRQSSRI-------KRCIIMDEVDGMGAGDRSGMSELIQMIKKSRVPIICICNDRQSQKMKSLLPYCMDLRYRRPTKSVIANRAVRIAAQEGFTVEQNAAEAIAESCGNDVRQVLNCMQMWASDSSSESRMTYKDLKQRESSINKDEI 617
BLAST of mRNA_S-dermatodea_contig11356.874.1 vs. uniprot
Match: A0A835YT94_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT94_9STRA) HSP 1 Score: 257 bits (657), Expect = 1.920e-75 Identity = 142/286 (49.65%), Postives = 178/286 (62.24%), Query Frame = 1
Query: 469 SSAPGQMWVDKYKPRSSSEVIGHSGQVKKLRVWLENWERWHLGNTGVKPPTGKENPG----ARAALLSGVPGVGKSSTANLVAKEMGYHVMELNASDTRNKNSLSTELASVIGNQVLSFMPGGXXXXXXXXXXXXXXXFRKQLVVMDEVDGMGGSDRGG----------------IQELILLIKKSKVPIIAICNDRQHQKIRSLVNHCYDLRFSRPQKATIAKRVKAIATMEGMEVDENAAEMLVEANGNDIRQVLHAMQMWSRKSSKMTYMNLKGGISSIEKDK 1266
SS PGQ+W DKY+P+ S+++GH+G V+KL WL N+E VK GK G RA L+SG PG+GK++ A +VAK +G+ V E NASDTR+K S+ L V+ N VLSF K++++MDEVDGMGG DRGG + ELI LI +KVPII ICNDRQ KIRSLVNHC D+RF RP K IAKR+K +A EG+++D NAAEML E+ GNDIRQ LHAMQMWSR S M YM +K G+ ++ KDK
Sbjct: 43 SSEPGQLWADKYRPQKPSDLLGHTGDVRKLTEWLNNFEA--RAAPAVKGAKGKGKAGDDMHKRAVLISGPPGIGKTTAATIVAKSLGFEVTEFNASDTRSKKSMEEGLKDVLSNTVLSFGSKAGSKPP------------KRVIIMDEVDGMGGGDRGGRNVAEADVQMRLLARSMGELIKLIAITKVPIICICNDRQDTKIRSLVNHCIDMRFKRPVKTMIAKRMKEVAQKEGLDIDLNAAEMLSESVGNDIRQCLHAMQMWSRGSRTMAYMEVKDGLGAVSKDK 314
BLAST of mRNA_S-dermatodea_contig11356.874.1 vs. uniprot
Match: A0A7S3JSX2_9STRA (Replication factor C subunit 1 (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSX2_9STRA) HSP 1 Score: 259 bits (662), Expect = 2.990e-75 Identity = 161/409 (39.36%), Postives = 224/409 (54.77%), Query Frame = 1
Query: 1 LRQYGAKVTGSVSSRTTYLLLGSVLDDGRAPEEGSKYKKAQQHKTKVVDE-DDLFKMLRDSNPGGKSPPSELKPGAXXXXXXXXXXGEKPLVANPYAKAAVVNPYGAKKPAVGGKXXXXXXXXAAAVGGXXGRASSGKSPAKVVRRVVAASAL--GAAHSSAPGQMWVDKYKPRSSSEVIGHSGQVKKLRVWLENWERWHLG--NTGVKPPTGKENPGARAALLSGVPGVGKSSTANLVAKEMGYHVMELNASDTRNKNSLSTELASVIGNQVLSFMPGGXXXXXXXXXXXXXXXFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSKVPIIAICNDRQHQKIRSLVNHCYDLRFSRPQKATIAKRVKAIATMEGMEVDENAAEMLVEANGNDIRQVLHAMQMWSRKSS 1212
++ G +V+GSVS +T +L++G++L+DGR+ EEG K+K A + K ++ + L + + +S PSE G G+ KS + V A S+ G+ ++W D+YKP+S+ +V+G+ VKKLR +LENWE+ HLG + K KENP A+AALLSG PG+GK++ A+L+AKE GY V+ELNASD R+K SL+ +L + L F K+L++MDEVDG+ GSDRGG QELI LIK S+VPII ICNDRQ K++ L N C+DLR RP K TIAKR+ IA EG++++ NAAE+L E GNDIRQ L+A+QMWS + S
Sbjct: 142 IKSLGGRVSGSVSGKTNFLVVGTLLEDGRSVEEGRKFKDAIERKVTIIRGWEKLVDTVEEMRKKRQSKPSE---------------------------------------------------------GSLGKLGLTKSKKRKVGSSTAPSSSMSGSGIERIENELWADRYKPKSTKDVLGNGEVVKKLRSFLENWEKVHLGPESKRKKLVPSKENPNAKAALLSGPPGIGKTTLAHLIAKEHGYDVLELNASDARSKKSLTEQLGGTLDCPTLKF-----------GAINAKDMTTKRLLIMDEVDGLSGSDRGGSQELIRLIKISRVPIICICNDRQSNKVKGLANSCFDLRCKRPMKQTIAKRIVLIANKEGLDLEANAAELLAENCGNDIRQCLNALQMWSTELS 482
BLAST of mRNA_S-dermatodea_contig11356.874.1 vs. uniprot
Match: A0A7J6DII2_9TELE (Replication factor C subunit 1 n=1 Tax=Onychostoma macrolepis TaxID=369639 RepID=A0A7J6DII2_9TELE) HSP 1 Score: 258 bits (658), Expect = 5.250e-73 Identity = 172/434 (39.63%), Postives = 236/434 (54.38%), Query Frame = 1
Query: 1 LRQYGAKVTGSVSSRTTYLLLGSVLDDGRAPEEGSKYKKAQQHKTKVVDEDDLFKMLRDSNPGGKSPPSELKPGAXXXXXXXXXXGEKPLVANPYAKAAVVNPYGAKKPAVGGKXXXXXXXXAAAVGGXXGRASSGKSPAKVVRRVVAASALGAAHSSAPGQMWVDKYKPRSSSEVIGHSGQ---VKKLRVWLENWERWHLGNTGVKPPTGK--------ENPGARAALLSGVPGVGKSSTANLVAKEMGYHVMELNASDTRNKNSLSTELASVIGN-QVLSFMPGGXXXXXXXXXXXXXXXFRKQLVVMDEVDGMGGS-DRGGIQELILLIKKSKVPIIAICNDRQHQKIRSLVNHCYDLRFSRPQKATIAKRVKAIATMEGMEVDENAAEMLVEANGNDIRQVLHAMQMWSRKSSKMTYMNLKGGISSIEKD 1263
+ +YG KVTG+VS +TTYL+LG D G SK +KA+ TK+++ED+LF ++R + PG KS E+ A + P KA P K+ + GK + +G S + R + ++ + S+ +WVDKY+PRS +IG G KL WL+NW + H GNT K PT K + G +AALLSG PGVGK++TA LV +E+GY +E+NAS TR+KNSL +A + N + +F G K +++MDEVDGM G+ DRGGIQE+I LIK+SK+PII +CNDR HQKIRSL N+CYDLRF RP+ I V +IA EG+++ A ++ A+ DIRQVLH + MWS K MTY K + +KD
Sbjct: 423 IERYGGKVTGNVSRKTTYLVLGR--DSG-----ASKTEKAESFGTKIINEDELFDLIR-TKPGKKSK-YEIAAEAENKSSKTRTPNSRGKPTPPSKKATPQGPSPNKRSPLEGKSKPGSASKSGTLGASRSEVKKSLSFDQSKRASPVSHSIPESEGSS--LLWVDKYRPRSLKNLIGQQGDQSCANKLLRWLQNWHKHHSGNT--KAPTAKFGKFGSKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYSGASQTVSS-----------KHVLIMDEVDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAVMSIAFKEGLKIPPPALNEVILASNQDIRQVLHNLSMWSAKDKVMTYDQAKADAKNAKKD 832
BLAST of mRNA_S-dermatodea_contig11356.874.1 vs. uniprot
Match: A0A6P6JJV5_CARAU (Replication factor C subunit 1 n=12 Tax=Cyprininae TaxID=2743694 RepID=A0A6P6JJV5_CARAU) HSP 1 Score: 256 bits (655), Expect = 1.340e-72 Identity = 175/435 (40.23%), Postives = 238/435 (54.71%), Query Frame = 1
Query: 1 LRQYGAKVTGSVSSRTTYLLLGSVLDDGRAPEEGSKYKKAQQHKTKVVDEDDLFKMLRDSNPGGKSPPSELKPGAXXXXXXXXXXGEKPLVANPYAKAAVVNPYGAKKPAVGGKXXXXXXXXAAAVGGXXGRASSGKSPAKVVRRV-VAASALGAAHSSAPGQMWVDKYKPRSSSEVIGHSGQ---VKKLRVWLENWERWHLGNTGVKPPTGK--------ENPGARAALLSGVPGVGKSSTANLVAKEMGYHVMELNASDTRNKNSLSTELASVIGN-QVLSFMPGGXXXXXXXXXXXXXXXFRKQLVVMDEVDGMGGS-DRGGIQELILLIKKSKVPIIAICNDRQHQKIRSLVNHCYDLRFSRPQKATIAKRVKAIATMEGMEVDENAAEMLVEANGNDIRQVLHAMQMWSRKSSKMTYMNLKGGISSIEKD 1263
+ +YG KVTG+VS +TTYL+LG D G SK +KA+ TK+++ED+L ++R + PG KS E+ A + P KA P K+ GGK + A+G S + R V+ S G+ SS +WVDKY+PRS +IG G KL WL+NW + H GNT K P+ K + G +AALLSG PGVGK++TA LV +E+GY +E+NAS TR+KNSL +A + N + +F G K +++MDEVDGM G+ DRGGIQE+I LIK+SK+PII +CNDR HQKIRSL N+CYDLRF RP+ I + +IA EG+++ A ++ A+ DIRQVLH + MWS K MTY K ++ +KD
Sbjct: 421 IERYGGKVTGNVSRKTTYLVLGR--DSGV-----SKTEKAESFGTKIINEDELLDLIR-TKPGKKSK-YEIAAEAENKSSKTRTPDSRGKPTTPSNKATPQGPSPNKRSTSGGKSKPGSASKSGALGASRSEVKKSLSFDQSKRASPVSHSTPGSEGSSL---LWVDKYRPRSLKNLIGQQGDQSCANKLLRWLQNWHKHHSGNT--KAPSAKFGKFGSKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYSGASQTVSS-----------KHVLIMDEVDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAIMSIAFKEGLKIPPPALNEVILASNQDIRQVLHNLSMWSAKDKVMTYDQAKADANNAKKD 830
BLAST of mRNA_S-dermatodea_contig11356.874.1 vs. uniprot
Match: F0XZ23_AURAN (AAA domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ23_AURAN) HSP 1 Score: 249 bits (637), Expect = 1.850e-72 Identity = 129/269 (47.96%), Postives = 179/269 (66.54%), Query Frame = 1
Query: 487 MWVDKYKPRSSSEVIGHSGQVKKLRVWLENWERWHLGNTGV--KPPTGKENPGARAALLSGVPGVGKSSTANLVAKEMGYHVMELNASDTRNKNSLSTELASVIGNQVLS--FMPGGXXXXXXXXXXXXXXXFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSKVPIIAICNDRQHQKIRSLVNHCYDLRFSRPQKATIAKRVKAIATMEGMEVDENAAEMLVEANGNDIRQVLHAMQMWSRKSSKM---TYMNLKGGISSIEKDKVR 1272
+W D++KP+S +++G+ KKL +WL++WE+ HLG+ KP KENPGA+AALLSG PG+GKSS A L+ G+ V+ELNASDTR+ ++ L +G QV+S F G +++V+MDE+DG+ GSDRGG Q L+ LIK S PII ICNDRQ K+++L NHC+DLRF RP K TIAKRV AIA EG+ +++NAAE+LVE+ GNDIRQ L+A+QMW+ + +Y +K +S+I KD ++
Sbjct: 122 LWADRHKPKSQKDILGNGDVCKKLGLWLDDWEKVHLGDEKKRKKPAFAKENPGAKAALLSGPPGIGKSSMAALLCAARGFDVVELNASDTRSARTVEETLGDALGCQVVSSSFAKKGAAPPSKKRL--------RRVVIMDEIDGLSGSDRGGSQALVKLIKSSSTPIICICNDRQSAKVKTLANHCFDLRFKRPMKVTIAKRVMAIAMKEGLTIEQNAAELLVESCGNDIRQCLNALQMWATSEGEAETCSYTAMKDRLSTISKDAIQ 382
BLAST of mRNA_S-dermatodea_contig11356.874.1 vs. uniprot
Match: A0A7S3VAW2_9STRA (Replication factor C subunit 1 n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAW2_9STRA) HSP 1 Score: 254 bits (648), Expect = 4.470e-72 Identity = 180/465 (38.71%), Postives = 250/465 (53.76%), Query Frame = 1
Query: 1 LRQYGAKVTGSVSSRTTYLLLGSVLDDGRAPEEGSKYKKAQQHKTKVV---------------DE------DDLFKMLRDSNPGGKSPPSELK-----PGAXXXXXXXXXXGEKPLVANPYAKAA-----VVNPYGAKKPAVGGKXXXXXXXXAAAVGGXXGRASSGKSPAKVVRRVVAASALGAAHSSAP--GQMWVDKYKPRSSSEVIGHSGQVKKLRVWLENWER-WHLGNTGVKPPTGKENPGAR-AALLSGVPGVGKSSTANLVAKEMGYHVMELNASDTRNKNSLSTELASVIGNQVLSFMPGGXXXXXXXXXXXXXXXFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSKVPIIAICNDRQHQKIRSLVNHCYDLRFSRPQKATIAKRVKAIATMEGMEVDENAAEMLVEANGNDIRQVLHAMQMWSR-------KSSKMTYMNLKGGISSIEKDKV 1269
++ G +VT +VS +T YL+ G++L+DGR EGSKYKKA + KVV DE DDL D + ELK P + + NPYAK+A V NPY + + G ++ XX + S K+ + + + S G ++ +W DKY P S+ ++G++ VKKLRVWL WER W+ ++ K + + G + AALLSG PG+GK++TA LVA+E G V+ELNASD R++ +L + L VIG+QVLSF +++ ++MDEVDGMG DRGGI+ LI +IK SKVPII ICNDRQ QKIRSL +C DL++ RP K+ IA+R + EGM ++ NAAE + E+ GNDIRQVL+ +QMWS K + MTY + K S I KD++
Sbjct: 237 VKNVGGRVTTAVSGKTNYLVTGNILEDGRDVCEGSKYKKATELSKKVVILDGEGELYMLAKMMDEKKGKTVDDLNNESNDVECENHTKEPELKTSLRNPYSNAVSSKASNPYAAIKITNPYAKSASSNSKVSNPYASSR----GISNPYKKESVTSIXXXXXXSPSVKNTSSLSSQSSQPSCSGGGRANIKDANALWADKYAPDSTRMILGNAEAVKKLRVWLSGWEREWNKTSSAGKKRSLTQKGGIKKAALLSGPPGIGKTTTAVLVAQEGGRQVLELNASDARSQKTLDSSLGGVIGSQVLSF--------DDPEANGRKVESKRRCIIMDEVDGMGQGDRGGIKGLIEMIKVSKVPIICICNDRQSQKIRSLEPYCLDLKYRRPVKSVIARRALEVGKAEGMSIEYNAAEAVAESCGNDIRQVLNCLQMWSNSKRLSTEKKAPMTYRDYKSRDSLINKDEM 689 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11356.874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11356.874.1 >prot_S-dermatodea_contig11356.874.1 ID=prot_S-dermatodea_contig11356.874.1|Name=mRNA_S-dermatodea_contig11356.874.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=424bp LRQYGAKVTGSVSSRTTYLLLGSVLDDGRAPEEGSKYKKAQQHKTKVVDEback to top mRNA from alignment at S-dermatodea_contig11356:120..7119- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11356.874.1 ID=mRNA_S-dermatodea_contig11356.874.1|Name=mRNA_S-dermatodea_contig11356.874.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7000bp|location=Sequence derived from alignment at S-dermatodea_contig11356:120..7119- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11356:120..7119- >mRNA_S-dermatodea_contig11356.874.1 ID=mRNA_S-dermatodea_contig11356.874.1|Name=mRNA_S-dermatodea_contig11356.874.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2544bp|location=Sequence derived from alignment at S-dermatodea_contig11356:120..7119- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |