mRNA_S-dermatodea_contig11355.872.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11355.872.1
Unique NamemRNA_S-dermatodea_contig11355.872.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11355.872.1 vs. uniprot
Match: UPI001C727911 (uncharacterized protein LOC107440395 n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C727911)

HSP 1 Score: 85.5 bits (210), Expect = 7.140e-16
Identity = 49/128 (38.28%), Postives = 72/128 (56.25%), Query Frame = 1
Query:  208 GPRTECALCFALLWEDDGETSSLCCQKGKVKLWPIPTAPPPEIAGLVSGDSAESRHFLLNIRRANSAFAFASTGAGNGHPLNQRRFPAGGPFTFVIQGEFRHTIGPVAPRPGVPPRYAQIYYYSGEDE 591
            G  TEC  C AL W+  GET S+CC  GK+KL  + T P P +A L++  S E+ HF  NIRR NS F   S G+G+   + ++ F      TF +QG+  H IG + P+    P + Q+Y+   +++
Sbjct:  156 GMATECISCQALKWK--GETPSMCCSNGKIKLCELQTPPEPLLA-LLTDSSIETVHFQSNIRRYNSCFQMTSFGSGS--EIREQGFMP----TFKVQGQVYHRIGSLQPQINDKPNFLQLYFVGDQEK 274          
BLAST of mRNA_S-dermatodea_contig11355.872.1 vs. uniprot
Match: A0A8D9E7Q7_9HEMI (ATP-dependent DNA helicase n=3 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9E7Q7_9HEMI)

HSP 1 Score: 85.5 bits (210), Expect = 7.310e-16
Identity = 53/138 (38.41%), Postives = 72/138 (52.17%), Query Frame = 1
Query:  178 HEDDWPQHLLGPRTECALCFALLWEDDGETSSLCCQKGKVKLWPIPTAPPPEIAGLVSGDSAESRHFLLNIRRANSAFAFASTGAGNGHPLNQRRFPAGGPFTFVIQGEFRHTIGPVAPRPGVPPRYAQIYYYSGEDE 591
            +ED+    +     EC  C AL W    E + +CC +GKVKL PI   PP  +  L+ G+SA+S+HFL NIR  NS FA  S  A   H ++    P     TF IQG+  H +G + P  G  P + QIY+   E +
Sbjct:   58 YEDNRKLDIGRMSKECNHCSALKWTR--EPAGMCCSQGKVKLLPI-RDPPEPLQSLLLGESADSKHFLKNIRLYNSLFAMTSFAA---HEVSDGWTP-----TFKIQGQVYHRVGSLLPAEGTQPVFLQIYFLGSETD 184          
BLAST of mRNA_S-dermatodea_contig11355.872.1 vs. uniprot
Match: A0A815TLT8_ADIRI (ATP-dependent DNA helicase n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815TLT8_ADIRI)

HSP 1 Score: 85.5 bits (210), Expect = 7.350e-16
Identity = 54/136 (39.71%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  184 DDWPQHLLGPRTE-CALCFALLWEDDGETSSLCCQKGKVKLWPIPTAPPPEIAGLVSGDSAESRHFLLNIRRANSAFAFASTGAGNGHPLNQRRFPAGGPFTFVIQGEFRHTIGPVAPRPGVPPRYAQIYYYSGED 588
            D+ PQ  +G  T+ C  C AL W   GET  +CC  GKVKL P    PP  +  L+SG +AES HFL NIR+ NS F   S G      +++    +G   TF +QG+  H +G + P     P++ QIY+  G+D
Sbjct:  141 DNHPQLCIGRMTDVCPYCEALKWP--GETRGMCCSGGKVKL-PQLRPPPEPLESLMSGSTAESNHFLDNIRKYNSCFQMTSFG------MSKEVVDSGFMPTFRVQGQVYHRVGSLLPPSDDEPKFLQIYFM-GDD 266          
BLAST of mRNA_S-dermatodea_contig11355.872.1 vs. uniprot
Match: A0A8D9BS93_9HEMI (ATP-dependent DNA helicase (Fragment) n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9BS93_9HEMI)

HSP 1 Score: 84.7 bits (208), Expect = 1.310e-15
Identity = 53/138 (38.41%), Postives = 72/138 (52.17%), Query Frame = 1
Query:  178 HEDDWPQHLLGPRTECALCFALLWEDDGETSSLCCQKGKVKLWPIPTAPPPEIAGLVSGDSAESRHFLLNIRRANSAFAFASTGAGNGHPLNQRRFPAGGPFTFVIQGEFRHTIGPVAPRPGVPPRYAQIYYYSGEDE 591
            +ED+    +     EC  C AL W    E + +CC +GKVKL PI   PP  +  L+ G+SA+S+HFL NIR  NS FA  S  A   H ++    P     TF IQG+  H +G + P  G  P + QIY+   E +
Sbjct:   41 YEDNRKLDIGRMSKECNHCSALKWTR--EPAGMCCSQGKVKLLPI-RDPPEPLQSLLLGESADSKHFLKNIRLYNSLFAMTSFAA---HEVSDGWTP-----TFKIQGQVYHRVGSLLPAEGSQPVFLQIYFLGSETD 167          
BLAST of mRNA_S-dermatodea_contig11355.872.1 vs. uniprot
Match: UPI001156685D (uncharacterized protein LOC115261339 n=3 Tax=Aedes albopictus TaxID=7160 RepID=UPI001156685D)

HSP 1 Score: 84.3 bits (207), Expect = 1.880e-15
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  223 CALCFALLWEDDGETSSLCCQKGKVKLWPIPTAPPPEIAGLVSGDSAESRHFLLNIRRANSAFAFASTGAGNGHPLNQRRFPAGGPFTFVIQGEFRHTIGPVAPRPGVPPRYAQIYYYSGE 585
            C  C A  +++  E+  LCC+ GKVKL  +   PP  +   +SGD+AES+HFL NIR+ NS F   S GA +   + Q  FP+    TF +QG+  H  G + P P  PP++ Q+Y+   +
Sbjct:  610 CRYCQAQKFKN--ESPGLCCKNGKVKLLQL-DQPPEALMNYMSGDTAESKHFLKNIRKYNSCFQMTSFGATS--VVEQGGFPS----TFTVQGQIYHKAGSLLPLPDQPPKFLQLYFIGND 721          
BLAST of mRNA_S-dermatodea_contig11355.872.1 vs. uniprot
Match: UPI0010BDDA4F (uncharacterized protein LOC114828554 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0010BDDA4F)

HSP 1 Score: 79.7 bits (195), Expect = 3.690e-15
Identity = 50/137 (36.50%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  184 DDWPQHLLGPRTE-CALCFALLWEDDGETSSLCCQKGKVKLWPIPTAPPPEIAGLVSGDSAESRHFLLNIRRANSAFAFASTGAGNGHPLNQRRFPAGGPFTFVIQGEFRHTIGPVAPRPGVPPRYAQIYYYSGEDE 591
            D  P+ ++G   + C  C AL +++  ET+ +CC  G+VKL P   +PP  +  LV+G+++ES+HFL NIR+ NSAF   S GA      N    P     TF  QG+  H  G + P P    ++ QIY+    D+
Sbjct:   59 DLHPKVVIGRMDQSCQFCRALKFKN--ETAGMCCANGQVKL-PDLRSPPQTLRALVAGETSESKHFLKNIRKYNSAFQMTSFGATE--TFNDEFMP-----TFKCQGQIYHRAGSLLPLPNEEHQFLQIYFMGDADQ 185          
BLAST of mRNA_S-dermatodea_contig11355.872.1 vs. uniprot
Match: UPI001652E20F (uncharacterized protein LOC110907174 n=3 Tax=Helianthus annuus TaxID=4232 RepID=UPI001652E20F)

HSP 1 Score: 82.0 bits (201), Expect = 1.160e-14
Identity = 54/134 (40.30%), Postives = 68/134 (50.75%), Query Frame = 1
Query:  223 CALCFALLWEDDGETSS-----------LCCQKGKVKLWPIPTAPPPEIAGLVSGDSAESRHFLLNIRRANSAFAFASTGAGNGHPLNQRRFPAGGPFTFVIQGEFRHTIGPVAPRPGVPPRYAQIYYYSGEDE 591
            C +C+A LW  D E  S           LCC   KV L    TA P   +  +S D+ ES+HFL NIRR NS FAF S G    H +N        PF + I GE  H+IG + P  GV P++ Q+Y Y  E+E
Sbjct:  196 CEVCYAKLW--DAEKGSGRKEGGKICHMLCCGYAKVVLPDYKTATPYYKSLFMSNDN-ESKHFLKNIRRYNSMFAFTSMGGKVDHTVNT----GNAPFCYRISGENYHSIGSLVPPNGVKPKFCQLYIYDTENE 322          
BLAST of mRNA_S-dermatodea_contig11355.872.1 vs. uniprot
Match: A0A816KES6_BRANA ((rape) hypothetical protein n=2 Tax=Brassica napus TaxID=3708 RepID=A0A816KES6_BRANA)

HSP 1 Score: 80.5 bits (197), Expect = 2.640e-14
Identity = 52/136 (38.24%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  211 PRTECALCFALLWED-----DGETSSL----CCQKGKVKLWPIPTAPPPEIAGLVSGDSAESRHFLLNIRRANSAFAFASTGAGNGHPLNQRRFPAGGPFTFVIQGEFRHTIGPVAPRPGVPPRYAQIYYYSGEDE 591
            P  EC  C AL+W+      D  T  L    CC +G++KL P+   PPP +  L+     + + F   IR  NS  AF S GA   + +   R    GPFTF IQG+  H IG + P+PG+PPRY Q+Y +   +E
Sbjct:   57 PILECPSCGALVWQSESTGRDPRTKELRFTICCNQGQIKLPPM-RQPPPVLEKLL-----QCKQFRETIRVYNSLLAFTSIGANIDYSVVFGR----GPFTFRIQGQTYHRIGSLIPKPGLPPRYLQLYIFDTANE 182          
BLAST of mRNA_S-dermatodea_contig11355.872.1 vs. uniprot
Match: UPI0016531018 (uncharacterized protein LOC110903608 n=3 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531018)

HSP 1 Score: 79.3 bits (194), Expect = 9.360e-14
Identity = 53/134 (39.55%), Postives = 68/134 (50.75%), Query Frame = 1
Query:  223 CALCFALLWEDDGETSS-----------LCCQKGKVKLWPIPTAPPPEIAGLVSGDSAESRHFLLNIRRANSAFAFASTGAGNGHPLNQRRFPAGGPFTFVIQGEFRHTIGPVAPRPGVPPRYAQIYYYSGEDE 591
            C +C+A LW  D E  S           LCC   KV L    TA P   +  +S D+ ES+HFL NIRR NS FAF S G      ++Q       PF + I GE  H+IG + P  GV P++ Q+Y Y  E+E
Sbjct:  196 CEVCYAKLW--DAEKGSGRKEGGKICHMLCCGYAKVVLPDYKTATPYYKSLFMSNDN-ESKHFLKNIRRYNSMFAFTSMGG----KVDQTVNTGNAPFCYRISGENYHSIGSLVPPNGVKPKFCQLYIYDTENE 322          
BLAST of mRNA_S-dermatodea_contig11355.872.1 vs. uniprot
Match: UPI001653246C (uncharacterized protein LOC110876575 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI001653246C)

HSP 1 Score: 79.3 bits (194), Expect = 9.900e-14
Identity = 53/134 (39.55%), Postives = 68/134 (50.75%), Query Frame = 1
Query:  223 CALCFALLWEDDGETSS-----------LCCQKGKVKLWPIPTAPPPEIAGLVSGDSAESRHFLLNIRRANSAFAFASTGAGNGHPLNQRRFPAGGPFTFVIQGEFRHTIGPVAPRPGVPPRYAQIYYYSGEDE 591
            C +C+A LW  D E  S           LCC   KV L    TA P   +  +S D+ ES+HFL NIRR NS FAF S G      ++Q       PF + I GE  H+IG + P  GV P++ Q+Y Y  E+E
Sbjct:  197 CEVCYAKLW--DAEKGSGRKEGGKICHMLCCGYAKVVLPDYKTATPYYKSLFMSNDN-ESKHFLKNIRRYNSMFAFTSMGG----KVDQTVNTGNAPFCYRISGENYHSIGSLVPPNGVKPKFCQLYIYDTENE 323          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11355.872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C7279117.140e-1638.28uncharacterized protein LOC107440395 n=2 Tax=Paras... [more]
A0A8D9E7Q7_9HEMI7.310e-1638.41ATP-dependent DNA helicase n=3 Tax=Cacopsylla mela... [more]
A0A815TLT8_ADIRI7.350e-1639.71ATP-dependent DNA helicase n=1 Tax=Adineta ricciae... [more]
A0A8D9BS93_9HEMI1.310e-1538.41ATP-dependent DNA helicase (Fragment) n=1 Tax=Caco... [more]
UPI001156685D1.880e-1538.84uncharacterized protein LOC115261339 n=3 Tax=Aedes... [more]
UPI0010BDDA4F3.690e-1536.50uncharacterized protein LOC114828554 n=1 Tax=Galen... [more]
UPI001652E20F1.160e-1440.30uncharacterized protein LOC110907174 n=3 Tax=Helia... [more]
A0A816KES6_BRANA2.640e-1438.24(rape) hypothetical protein n=2 Tax=Brassica napus... [more]
UPI00165310189.360e-1439.55uncharacterized protein LOC110903608 n=3 Tax=Helia... [more]
UPI001653246C9.900e-1439.55uncharacterized protein LOC110876575 n=1 Tax=Helia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11355contigS-dermatodea_contig11355:1049..1894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score97.4
Seed ortholog evalue7.7e-18
Seed eggNOG ortholog3880.AES87873
KEGG koko:K07466,ko:K15255
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
EggNOG free text desc.Belongs to the helicase family
EggNOG OGs37Q72@33090,3GCCF@35493,4JS2N@91835,COG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.D
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03029,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size591
Cds size591
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924198.9628847-CDS-S-dermatodea_contig11355:1048..13011622924198.9628847-CDS-S-dermatodea_contig11355:1048..1301Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11355 1049..1301 +
1694079086.7020447-CDS-S-dermatodea_contig11355:1048..13011694079086.7020447-CDS-S-dermatodea_contig11355:1048..1301Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11355 1049..1301 +
1622924198.9712632-CDS-S-dermatodea_contig11355:1556..18941622924198.9712632-CDS-S-dermatodea_contig11355:1556..1894Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11355 1557..1894 +
1694079086.714923-CDS-S-dermatodea_contig11355:1556..18941694079086.714923-CDS-S-dermatodea_contig11355:1556..1894Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11355 1557..1894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11355.872.1prot_S-dermatodea_contig11355.872.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11355 1049..1894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11355.872.1

>prot_S-dermatodea_contig11355.872.1 ID=prot_S-dermatodea_contig11355.872.1|Name=mRNA_S-dermatodea_contig11355.872.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=197bp
QQQQRRQQQRDVGAAAAAAAAALRQQPRLRLQRRARTTRQATQLARTLGS
MCALPLHAIHEDDWPQHLLGPRTECALCFALLWEDDGETSSLCCQKGKVK
LWPIPTAPPPEIAGLVSGDSAESRHFLLNIRRANSAFAFASTGAGNGHPL
NQRRFPAGGPFTFVIQGEFRHTIGPVAPRPGVPPRYAQIYYYSGEDE
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mRNA from alignment at S-dermatodea_contig11355:1049..1894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11355.872.1 ID=mRNA_S-dermatodea_contig11355.872.1|Name=mRNA_S-dermatodea_contig11355.872.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=846bp|location=Sequence derived from alignment at S-dermatodea_contig11355:1049..1894+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAACAACAACAGCGACGCCAGCAGCAGAGGGATGTGGGCGCTGCTGCTGC TGCTGCTGCTGCTGCCCTACGCCAGCAACCGCGCCTGCGACTACAACGGC GCGCTCGCACCACCCGACAGGCTACACAGCTGGCGCGTACACTCGGTTCC ATGTGTGCTTTGCCCCTTCATGCTATACACGAAGATGACTGGCCTCAACA TCTTCTTGGACCGCGAACGGAGTGCGCCCTCTGCTTCGCACTCCTCTGGG AAGGTTAGTTATCCTACCAAATTCCTGTAATGCTTCAGAATTTCTTGACT TCTTTGTTTACCCAATATTACCATGCGTTTAGATTTGAAATATTTGATTA TTGAACGGAACGGAACAATGTCAACGTGTAGTTTTAAATTATGGTTCAAC TTATCTTACTTCTCTCTTTTACTACTTCTCTCTTTTACTACTAATCACAT TTCCATTCCAAGCCTCCCATCTTCTTACTCACGCTGTCGCCCTTTTTTCT CCTTGCAGATGACGGTGAAACATCCAGCCTTTGCTGCCAAAAGGGCAAGG TTAAACTGTGGCCAATACCTACCGCGCCACCTCCGGAAATCGCGGGGTTG GTCTCCGGTGATTCGGCTGAGTCGAGACATTTCCTCCTCAACATACGGCG AGCCAACTCCGCATTCGCTTTTGCTTCAACCGGTGCTGGGAACGGGCACC CGTTGAACCAGAGACGATTCCCTGCAGGAGGTCCATTCACTTTTGTCATT CAAGGGGAGTTCCGCCACACCATCGGCCCTGTCGCACCACGGCCGGGTGT GCCACCGCGGTACGCCCAAATTTACTACTACTCCGGTGAGGACGAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11355:1049..1894+

>mRNA_S-dermatodea_contig11355.872.1 ID=mRNA_S-dermatodea_contig11355.872.1|Name=mRNA_S-dermatodea_contig11355.872.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at S-dermatodea_contig11355:1049..1894+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAACAACAACAGCGACGCCAGCAGCAGAGGGATGTGGGCGCTGCTGCTGC
TGCTGCTGCTGCTGCCCTACGCCAGCAACCGCGCCTGCGACTACAACGGC
GCGCTCGCACCACCCGACAGGCTACACAGCTGGCGCGTACACTCGGTTCC
ATGTGTGCTTTGCCCCTTCATGCTATACACGAAGATGACTGGCCTCAACA
TCTTCTTGGACCGCGAACGGAGTGCGCCCTCTGCTTCGCACTCCTCTGGG
AAGCAACAACAACAGCGACGCCAGCAGCAGAGGGATGTGGGCGCTGCTGC
TGCTGCTGCTGCTGCTGCCCTACGCCAGCAACCGCGCCTGCGACTACAAC
GGCGCGCTCGCACCACCCGACAGGCTACACAGCTGGCGCGTACACTCGGT
TCCATGTGTGCTTTGCCCCTTCATGCTATACACGAAGATGACTGGCCTCA
ACATCTTCTTGGACCGCGAACGGAGTGCGCCCTCTGCTTCGCACTCCTCT
GGGAAGATGACGGTGAAACATCCAGCCTTTGCTGCCAAAAGGGCAAGGTT
AAACTGTGGCCAATACCTACCGCGCCACCTCCGGAAATCGCGGGGTTGGT
CTCCGGTGATTCGGCTGAGTCGAGACATTTCCTCCTCAACATACGGCGAG
CCAACTCCGCATTCGCTTTTGCTTCAACCGGTGCTGGGAACGGGCACCCG
TTGAACCAGAGACGATTCCCTGCAGGAGGTCCATTCACTTTTGTCATTCA
AGGGGAGTTCCGCCACACCATCGGCCCTGTCGCACCACGGCCGGGTGTGC
CACCGCGGTACGCCCAAATTTACTACTACTCCGGTGAGGACGAAATGACG
GTGAAACATCCAGCCTTTGCTGCCAAAAGGGCAAGGTTAAACTGTGGCCA
ATACCTACCGCGCCACCTCCGGAAATCGCGGGGTTGGTCTCCGGTGATTC
GGCTGAGTCGAGACATTTCCTCCTCAACATACGGCGAGCCAACTCCGCAT
TCGCTTTTGCTTCAACCGGTGCTGGGAACGGGCACCCGTTGAACCAGAGA
CGATTCCCTGCAGGAGGTCCATTCACTTTTGTCATTCAAGGGGAGTTCCG
CCACACCATCGGCCCTGTCGCACCACGGCCGGGTGTGCCACCGCGGTACG
CCCAAATTTACTACTACTCCGGTGAGGACGAA
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