mRNA_S-dermatodea_contig11352.870.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11352.870.1
Unique NamemRNA_S-dermatodea_contig11352.870.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11352.870.1 vs. uniprot
Match: D8LBU3_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBU3_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 4.880e-44
Identity = 85/98 (86.73%), Postives = 94/98 (95.92%), Query Frame = 1 
Query:   22 DESLRKQDEHYLRELRICLREVLSELRKDKRFSMFKQIGDYEGEFMDLNAIRDKLNAEEYLTLDDFEDDLKLMAKEAMEVRDRLKADLARAEAHAAVL 315
            DESL+KQ+EHYLRELRICLREVL ELRKD+RFSMFKQIGDYEGEFMDLN IRDKLNAEEY+TLDDFE+DLKLMA+EA EVRDRLKA+LARAEA+A+ L
Sbjct:  870 DESLKKQEEHYLRELRICLREVLGELRKDRRFSMFKQIGDYEGEFMDLNGIRDKLNAEEYVTLDDFEEDLKLMAEEAKEVRDRLKANLARAEANASAL 967
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BLAST of mRNA_S-dermatodea_contig11352.870.1 vs. uniprot
Match: A0A6H5L3Q2_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q2_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 2.430e-43
Identity = 84/97 (86.60%), Postives = 92/97 (94.85%), Query Frame = 1 
Query:   25 ESLRKQDEHYLRELRICLREVLSELRKDKRFSMFKQIGDYEGEFMDLNAIRDKLNAEEYLTLDDFEDDLKLMAKEAMEVRDRLKADLARAEAHAAVL 315
            ESLRKQ+EHYLRELRICLREVL ELRKD+RFSMFKQIGDYEGEFMDLN IRDKLNAEEY+TLDDFE+DLKLMA+EA EVRDRLKA+LARAE +A+ L
Sbjct:   49 ESLRKQEEHYLRELRICLREVLGELRKDRRFSMFKQIGDYEGEFMDLNGIRDKLNAEEYVTLDDFEEDLKLMAEEAKEVRDRLKANLARAETNASAL 145
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BLAST of mRNA_S-dermatodea_contig11352.870.1 vs. uniprot
Match: A0A7S2DSB6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DSB6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.240e-7
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:   43 DEHYLRELRICLREVLSELRKDKRFSMFKQIGDYEG---------EFMDLNAIRDKLNAEEYLTLDDFEDDLKLMAKEA 252
            D H+LRELRICLR VL+++RK+KR+S+F +  D E          E MDL+ +R +++A EYL   DF  D +L+ + A
Sbjct:   49 DAHHLRELRICLRAVLADIRKEKRYSIFARPVDPEQSPGYYQVILEPMDLDTMRARIDAGEYLCASDFIADTRLIKENA 127
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BLAST of mRNA_S-dermatodea_contig11352.870.1 vs. uniprot
Match: A0A4D9DB34_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DB34_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.820e-7
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:   49 HYLRELRICLREVLSELRKDKRFSMF------KQIGDYEGEF---MDLNAIRDKLNAEEYLTLDDFEDDLKLMAKEA 252
            H  RE RICLR++L+EL+KDKR+S F      +++ DY       MDL  +R K++AEEY T D+F  D+ L+   A
Sbjct: 1214 HLRREFRICLRKILAELKKDKRYSYFSSPVDPEEVPDYYSVISHPMDLETMRCKVDAEEYETRDEFRRDVVLIRANA 1290
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BLAST of mRNA_S-dermatodea_contig11352.870.1 vs. uniprot
Match: V4CF06_LOTGI (Bromo domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4CF06_LOTGI)

HSP 1 Score: 52.0 bits (123), Expect = 1.940e-5
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:   31 LRKQDEHYLRELRICLREVLSELRKDKRFSMFKQIGDYEG---------EFMDLNAIRDKLNAEEYLTLDDFEDDLKLMAKEAME 258
            L+ Q+E  LRELRI LR+VL++L +D++FSMF +  D E          + MD++ +  K++  EY+T++ F  D+ L+ + A+E
Sbjct:  598 LKHQEESTLRELRIFLRDVLTKLGRDRKFSMFTKPVDLEEVPDYLVIVKKPMDMSTMMTKIDLHEYVTVEAFMSDIDLICRNALE 682
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BLAST of mRNA_S-dermatodea_contig11352.870.1 vs. uniprot
Match: A0A1E1X2M1_9ACAR (Putative 26s proteasome regulatory complex atpase rpt2 (Fragment) n=1 Tax=Amblyomma aureolatum TaxID=187763 RepID=A0A1E1X2M1_9ACAR)

HSP 1 Score: 50.1 bits (118), Expect = 9.200e-5
Identity = 32/87 (36.78%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:   25 ESLRKQDEHYLRELRICLREVLSELRKDKRFSMF------KQIGDYEGEF---MDLNAIRDKLNAEEYLTLDDFEDDLKLMAKEAME 258
            E LR+Q+E  LRELR+ LR++L++L +D+R+SMF      +++ DY       MDL  +  K++  +Y T+  F  D++L+   A+E
Sbjct:  594 ERLRQQEEATLRELRLFLRDILTKLMRDRRYSMFAKPVDAEEVPDYLDVIQQPMDLETMMVKIDLHKYQTVGQFLQDIELICSNALE 680
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11352.870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LBU3_ECTSI4.880e-4486.73AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L3Q2_9PHAE2.430e-4386.60Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2DSB6_9STRA1.240e-744.30Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A4D9DB34_9STRA8.820e-744.16Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
V4CF06_LOTGI1.940e-537.65Bromo domain-containing protein n=1 Tax=Lottia gig... [more]
A0A1E1X2M1_9ACAR9.200e-536.78Putative 26s proteasome regulatory complex atpase ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11352contigS-dermatodea_contig11352:5178..7210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue9.5e-39
Seed eggNOG ortholog2880.D8LBU3
EggNOG free text desc.atpase family aaa
EggNOG OGsCOG0554@1,KOG0732@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAAA ATPase domain
Ec32 orthologEc-27_002690.1
Exons4
Model size322
Cds size318
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11352.870.1prot_S-dermatodea_contig11352.870.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11352 5180..7210 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924198.8585892-CDS-S-dermatodea_contig11352:5179..53141622924198.8585892-CDS-S-dermatodea_contig11352:5179..5314Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11352 5180..5314 -
1694079086.6270216-CDS-S-dermatodea_contig11352:5179..53141694079086.6270216-CDS-S-dermatodea_contig11352:5179..5314Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11352 5180..5314 -
1622924198.868754-CDS-S-dermatodea_contig11352:5977..60191622924198.868754-CDS-S-dermatodea_contig11352:5977..6019Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11352 5978..6019 -
1694079086.6399627-CDS-S-dermatodea_contig11352:5977..60191694079086.6399627-CDS-S-dermatodea_contig11352:5977..6019Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11352 5978..6019 -
1622924198.877687-CDS-S-dermatodea_contig11352:6403..64601622924198.877687-CDS-S-dermatodea_contig11352:6403..6460Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11352 6404..6460 -
1694079086.649832-CDS-S-dermatodea_contig11352:6403..64601694079086.649832-CDS-S-dermatodea_contig11352:6403..6460Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11352 6404..6460 -
1622924198.8863914-CDS-S-dermatodea_contig11352:7126..72101622924198.8863914-CDS-S-dermatodea_contig11352:7126..7210Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11352 7127..7210 -
1694079086.6594956-CDS-S-dermatodea_contig11352:7126..72101694079086.6594956-CDS-S-dermatodea_contig11352:7126..7210Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11352 7127..7210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11352.870.1

>prot_S-dermatodea_contig11352.870.1 ID=prot_S-dermatodea_contig11352.870.1|Name=mRNA_S-dermatodea_contig11352.870.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
EPQEEPEDESLRKQDEHYLRELRICLREVLSELRKDKRFSMFKQIGDYEG
EFMDLNAIRDKLNAEEYLTLDDFEDDLKLMAKEAMEVRDRLKADLARAEA
HAAVLA
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mRNA from alignment at S-dermatodea_contig11352:5178..7210-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11352.870.1 ID=mRNA_S-dermatodea_contig11352.870.1|Name=mRNA_S-dermatodea_contig11352.870.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2033bp|location=Sequence derived from alignment at S-dermatodea_contig11352:5178..7210- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCCCCAGGAGGAACCCGAGGACGAATCTCTGCGCAAGCAGGACGAGCA
CTATCTACGAGAGCTGAGGATATGCCTCCGCGAGGTAAACGATTGTGCGG
GAAACTGCTGGTTCGTGTGTTTTTTCTTGTCGACAAGGGAACAATCATGA
CATCATGAGGAAGGTGTTGTGTGCGCTTTTCCAGCCGGGTCTGGATTTCC
GAGACGGGCGGCAGTGTGAAGATTTCGCTTTTGATGGAGCACTCCGTTGA
GTCAATCGAATATCGAGCGCATCGGACACTTTGTGGATGTGTGGTTGATG
CGAATTGTTCGCGTGAATAGCTCTGTTTTTCTGCACCAGGCCAGATAACG
TATCATACAAGTTTTACCCACATATTTATACATAGGGTTTTGTATTTATT
TATTTTATTCCTTCTCTCCGTGCCACCGCCATAAAAATAGTTATCAAGAG
ATGAAGCGAGTGTCCTCGATAGGCTCGCGCCTACGCCGCCCTTAACTATT
AGTGTCTGGGTCGCGTGTAAAAGTCGTCTCATATTATAAGACATTCAAGC
GATTAGGCGCCGTTCGTGGCAAAAACGTGGACATTCGAAACGAAGAAACC
TTGAAGTTGACGTCCAGATGCTCCTGCAGCACAAGCTCTTAACTACAGTG
GTGTGACACTCTTTGCGGGCTCCGTCAAATTCTGCCCTTCGCCCGTCAAT
TAAAAAAAAAAACTAAGCATTGCGTCGTTTTCTGCGCGCGCGCGCCTCAG
GTTCTCAGCGAGCTCCGGAAGGACAAGCGCTTCTCCATGTTCAAGCAGAT
TGGCGACGTGAGTATTTCGTTTTTTCTTGATTTTATCGCCCCCGTTACTT
GTACATGTCCTTCCCGCTTCTTTCGCGCTGCGTCGGGGTGCAAGCTACAA
GCGTGTTATTTGTATGTGTTTCGTGTGGAAAGCGACCCCTTCGCCAGCGA
GGCCTGTCTCTGCTGCCAGGAAGTGGTCCGGATTTGCTCAGGAGGTCTCT
CCTCGGGCTACTTTATTTGCCCGTGATACATCTATCTAAACGCTTGCTGT
GTGACTGGAAATGATCCTTTACCGCTTTAGCTGCTTTGTCGCTCGGGAGG
TTCTGGGCGTCTAATGTTCCGTCTCGTTTGCTGCTGTGCCGCGCTGCCCC
GCCCTCCCGCCTCCCTAAACACTTGCGCGCCGAACGCTCAGTACGAAGGG
GAGTTTATGGACCTGAACGCCATTCGAGATAAGGTGAGACGTGGACTAAG
GCACCAGGGCCTCCACTGTCATACTGTTTGTAGTAGTTGTGCGACTGTTG
TTTAGTTCATTTCACCCCGCAGTAAGGGTATCGCATGAACGTGTAGGTAG
TACTTGTATCGTTTCCGCGTTCCGTATACATGCGCCTATTTAGACGAGAG
TCAGGTCAGATGGGAGGTTGGGGCGCGCTTTTAGTGTTGGTGTGGGCCTT
GCAACCTGAAGGCCGCGCCTGACGGCGGGTTGGTTGGCGTTGGTGGGAGA
AAACGTGGCCGCAGGCGGACGCCCAGTAGTGGGCAAAAAGCGACGCACTC
CCTTTTTCGCAGGTGCCTCGCGAGTTCATGCGAAAAGACGGGTGGTTGTG
CCCGGTGTTGGCGACTAATGCGCGCCCATTGAGGGCCAAGCTCGGCAAAA
GTACGTGCCTTTCGCCCGCTTCCCCTCACCCACGGCCCCCCAGCCCCTCC
CCCCCCTTTCTCGCTTTCGCGTATCATGGTGGCGAGTGTTGCAAGTTGTC
TTGCTCTTGAAACGAATATAACCGGCTACGCTGCGTCAAGCCACGACCAC
GACCACGCCCAGCACAATCCAAATCTTGCGCACCCTACTTTCCGTTTGCC
GTGACGGCCCTCTCTCCGTGGACGCAATAAAAATATATCAAAACAGCTTA
ATGCCGAGGAATACCTCACGCTAGACGACTTCGAGGACGACCTCAAGCTC
ATGGCGAAGGAAGCCATGGAGGTCCGCGACCGCCTCAAGGCTGACCTCGC
CCGCGCCGAGGCCCACGCCGCCGTTCTCGCCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11352:5178..7210-

>mRNA_S-dermatodea_contig11352.870.1 ID=mRNA_S-dermatodea_contig11352.870.1|Name=mRNA_S-dermatodea_contig11352.870.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig11352:5178..7210- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCCCCAGGAGGAACCCGAGGACGAATCTCTGCGCAAGCAGGACGAGCA
CTATCTACGAGAGCTGAGGATATGCCTCCGCGAGGAGCCCCAGGAGGAAC
CCGAGGACGAATCTCTGCGCAAGCAGGACGAGCACTATCTACGAGAGCTG
AGGATATGCCTCCGCGAGGTTCTCAGCGAGCTCCGGAAGGACAAGCGCTT
CTCCATGTTCAAGCAGATTGGCGACGTTCTCAGCGAGCTCCGGAAGGACA
AGCGCTTCTCCATGTTCAAGCAGATTGGCGACTACGAAGGGGAGTTTATG
GACCTGAACGCCATTCGAGATAAGTACGAAGGGGAGTTTATGGACCTGAA
CGCCATTCGAGATAAGCTTAATGCCGAGGAATACCTCACGCTAGACGACT
TCGAGGACGACCTCAAGCTCATGGCGAAGGAAGCCATGGAGGTCCGCGAC
CGCCTCAAGGCTGACCTCGCCCGCGCCGAGGCCCACGCCGCCGTTCTCGC
CCTTAATGCCGAGGAATACCTCACGCTAGACGACTTCGAGGACGACCTCA
AGCTCATGGCGAAGGAAGCCATGGAGGTCCGCGACCGCCTCAAGGCTGAC
CTCGCCCGCGCCGAGGCCCACGCCGCCGTTCTCGCC
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