mRNA_S-dermatodea_contig11337.863.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11337.863.1
Unique NamemRNA_S-dermatodea_contig11337.863.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11337.863.1 vs. uniprot
Match: A0A7S2Y4F2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4F2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 6.600e-11
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = -2 
Query:  183 DSKTLMLVCVSPATTNAEESSCSLNFAARVRTVELGKVKQPAEQGI 320
            DSKTLM VC+SP   NA+ES CSLNFA+RVRTVELGK  +    G+
Sbjct:   43 DSKTLMFVCISPVMYNADESFCSLNFASRVRTVELGKASKNVSPGV 88
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BLAST of mRNA_S-dermatodea_contig11337.863.1 vs. uniprot
Match: D7FLM8_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM8_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 9.020e-10
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = -2 
Query:  186 DSKTLMLVCVSPATTNAEESSCSLNFAARVRTVELGKVKQPAEQG 320
            DSKTLMLVCVSP   +AEES CSLNFAARVRTVELGK  +    G
Sbjct:  731 DSKTLMLVCVSPVVQSAEESWCSLNFAARVRTVELGKAHKHGASG 775
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BLAST of mRNA_S-dermatodea_contig11337.863.1 vs. uniprot
Match: A0A813A2Y1_SYMMI (Kifc3 protein n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813A2Y1_SYMMI)

HSP 1 Score: 60.5 bits (145), Expect = 3.870e-9
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = -2 
Query:  180 DSKTLMLVCVSPATTNAEESSCSLNFAARVRTVELGKVKQPAEQGIG 320
            DSKTLM VCVSP   N+EE+ CSLNFA+RVR+VELGK  +   Q  G
Sbjct:  111 DSKTLMFVCVSPVVYNSEETFCSLNFASRVRSVELGKASKNVGQAPG 157
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BLAST of mRNA_S-dermatodea_contig11337.863.1 vs. uniprot
Match: A0A836CB76_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB76_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.360e-8
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = -2 
Query:  207 DSKTLMLVCVSPATTNAEESSCSLNFAARVRTVELGKV 320
            DSKTLM VC+SP   NAEE+ CSLNFA+RVRTVELGK 
Sbjct:  298 DSKTLMFVCISPVIYNAEETFCSLNFASRVRTVELGKA 335
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BLAST of mRNA_S-dermatodea_contig11337.863.1 vs. uniprot
Match: A0A7S3HLW0_9STRA (Kinesin-like protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLW0_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.800e-8
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = -2 
Query:  186 DSKTLMLVCVSPATTNAEESSCSLNFAARVRTVELGKVKQPAEQG 320
            DSKTLM+VCVSP   N+EE+ CSLNFA RVRTVELG+  +    G
Sbjct:  299 DSKTLMIVCVSPVLYNSEETFCSLNFAGRVRTVELGRASKTITSG 343
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BLAST of mRNA_S-dermatodea_contig11337.863.1 vs. uniprot
Match: A0A2R5G4J1_9STRA (Kinesin-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G4J1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.040e-8
Identity = 31/40 (77.50%), Postives = 32/40 (80.00%), Query Frame = -2 
Query:  201 DSKTLMLVCVSPATTNAEESSCSLNFAARVRTVELGKVKQ 320
            DSKTLM V VSP  TNAEES CSLNFAAR RTVELGK  +
Sbjct:  841 DSKTLMFVQVSPVKTNAEESFCSLNFAARARTVELGKASK 880
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BLAST of mRNA_S-dermatodea_contig11337.863.1 vs. uniprot
Match: A0A7S2L173_9DINO (Kinesin-like protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2L173_9DINO)

HSP 1 Score: 58.9 bits (141), Expect = 6.900e-8
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = -2 
Query:  195 DSKTLMLVCVSPATTNAEESSCSLNFAARVRTVELGKVKQPA 320
            DSKTLM+VC SPA TN  E+S SLNFA+R R VELGK K+ A
Sbjct:  560 DSKTLMIVCASPAQTNVTETSSSLNFASRARNVELGKAKRNA 601
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BLAST of mRNA_S-dermatodea_contig11337.863.1 vs. uniprot
Match: A0A6U1BUB9_9STRA (Kinesin-like protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1BUB9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.580e-8
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = -2 
Query:  201 DSKTLMLVCVSPATTNAEESSCSLNFAARVRTVELGKVKQ 320
            D+KTLM VCVSP   N+EE+ CSL FAARVRTVELGK ++
Sbjct:  668 DAKTLMFVCVSPVIYNSEETYCSLTFAARVRTVELGKAQR 707
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BLAST of mRNA_S-dermatodea_contig11337.863.1 vs. uniprot
Match: A0A7S2GC58_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GC58_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.120e-7
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = -2 
Query:  207 DSKTLMLVCVSPATTNAEESSCSLNFAARVRTVELGKV 320
            DSKTLM VC+SP   NAEE+ CSLNFA RV +VELGK 
Sbjct:  110 DSKTLMFVCISPVMYNAEETFCSLNFAQRVNSVELGKA 147
[Close]
BLAST of mRNA_S-dermatodea_contig11337.863.1 vs. uniprot
Match: A0A813IDW9_POLGL (Hypothetical protein n=2 Tax=Dinophyceae TaxID=2864 RepID=A0A813IDW9_POLGL)

HSP 1 Score: 55.5 bits (132), Expect = 1.940e-7
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = -2 
Query:  201 DSKTLMLVCVSPATTNAEESSCSLNFAARVRTVELGKVKQ 320
            DSKTLM+VC SPA +N  E++ SLNFA+R R VELGK K+
Sbjct:   96 DSKTLMIVCASPAQSNVTETNSSLNFASRARNVELGKAKR 135
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11337.863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2Y4F2_9STRA6.600e-1165.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7FLM8_ECTSI9.020e-1073.33Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A813A2Y1_SYMMI3.870e-963.83Kifc3 protein n=2 Tax=Symbiodinium microadriaticum... [more]
A0A836CB76_9STRA1.360e-876.32Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
A0A7S3HLW0_9STRA1.800e-864.44Kinesin-like protein n=2 Tax=Spumella elongata Tax... [more]
A0A2R5G4J1_9STRA2.040e-877.50Kinesin-like protein n=1 Tax=Hondaea fermentalgian... [more]
A0A7S2L173_9DINO6.900e-869.05Kinesin-like protein n=1 Tax=Brandtodinium nutricu... [more]
A0A6U1BUB9_9STRA9.580e-870.00Kinesin-like protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2GC58_9STRA1.120e-771.05Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A813IDW9_POLGL1.940e-765.00Hypothetical protein n=2 Tax=Dinophyceae TaxID=286... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11337contigS-dermatodea_contig11337:1435..1757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924198.292301-CDS-S-dermatodea_contig11337:1434..17551622924198.292301-CDS-S-dermatodea_contig11337:1434..1755Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11337 1435..1755 +
1694079086.1776423-CDS-S-dermatodea_contig11337:1434..17551694079086.1776423-CDS-S-dermatodea_contig11337:1434..1755Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11337 1435..1755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11337.863.1prot_S-dermatodea_contig11337.863.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11337 1435..1755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11337.863.1

>prot_S-dermatodea_contig11337.863.1 ID=prot_S-dermatodea_contig11337.863.1|Name=mRNA_S-dermatodea_contig11337.863.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=107bp
IFAAKRWSGDQKSGALALSRFVREKRSIETALKQRILISAPLSGKRRKPP
SSLQFPSAHHPIPCSAGCFTFPSSTVRTLAAKLREHEDSSALVVAGLTHT
SIRVFES
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mRNA from alignment at S-dermatodea_contig11337:1435..1757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11337.863.1 ID=mRNA_S-dermatodea_contig11337.863.1|Name=mRNA_S-dermatodea_contig11337.863.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=323bp|location=Sequence derived from alignment at S-dermatodea_contig11337:1435..1757+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTTTTGCTGCGAAACGGTGGAGCGGAGATCAGAAAAGCGGCGCGCTGGC
TCTCTCGCGTTTCGTGAGAGAAAAACGCTCGATAGAAACGGCCCTTAAGC
AACGAATTTTGATATCAGCACCTCTGTCGGGAAAACGTCGGAAACCCCCC
TCGTCTCTCCAATTCCCATCCGCCCACCATCCTATTCCTTGTTCTGCCGG
TTGCTTTACCTTTCCGAGTTCTACGGTGCGGACCCTTGCGGCAAAGTTGA
GGGAGCACGAAGACTCTTCCGCGTTAGTCGTGGCCGGGCTCACACACACG
AGCATAAGGGTCTTCGAGTCGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11337:1435..1757+

>mRNA_S-dermatodea_contig11337.863.1 ID=mRNA_S-dermatodea_contig11337.863.1|Name=mRNA_S-dermatodea_contig11337.863.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at S-dermatodea_contig11337:1435..1757+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTTTTGCTGCGAAACGGTGGAGCGGAGATCAGAAAAGCGGCGCGCTGGC
TCTCTCGCGTTTCGTGAGAGAAAAACGCTCGATAGAAACGGCCCTTAAGC
AACGAATTTTGATATCAGCACCTCTGTCGGGAAAACGTCGGAAACCCCCC
TCGTCTCTCCAATTCCCATCCGCCCACCATCCTATTCCTTGTTCTGCCGG
TTGCTTTACCTTTCCGAGTTCTACGGTGCGGACCCTTGCGGCAAAGTTGA
GGGAGCACGAAGACTCTTCCGCGTTAGTCGTGGCCGGGCTCACACACACG
AGCATAAGGGTCTTCGAGTCGATTTTTGCTGCGAAACGGTGGAGCGGAGA
TCAGAAAAGCGGCGCGCTGGCTCTCTCGCGTTTCGTGAGAGAAAAACGCT
CGATAGAAACGGCCCTTAAGCAACGAATTTTGATATCAGCACCTCTGTCG
GGAAAACGTCGGAAACCCCCCTCGTCTCTCCAATTCCCATCCGCCCACCA
TCCTATTCCTTGTTCTGCCGGTTGCTTTACCTTTCCGAGTTCTACGGTGC
GGACCCTTGCGGCAAAGTTGAGGGAGCACGAAGACTCTTCCGCGTTAGTC
GTGGCCGGGCTCACACACACGAGCATAAGGGTCTTCGAGTCG
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