mRNA_S-dermatodea_contig11330.860.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11330.860.1
Unique NamemRNA_S-dermatodea_contig11330.860.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11330.860.1 vs. uniprot
Match: A0A6H5KCI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI7_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.640e-16
Identity = 52/101 (51.49%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:    1 LPAKAPLASYRMVSG-ECAVLSQSQGTRALREFVAKAGMQPHEFALHP---GGATQLCAGG-VAPHVLQRQGRWNSDAYKVYARDNGKYTGRLSDMLDNVD 288
            LP  APL+SYR  SG E  VL   Q  RALRE V ++G  P +FALH    GGA+ L AGG V+  V+QR+GRW SDAYKVY  +N + + R+S  L + D
Sbjct:  345 LPDSAPLSSYR--SGQEVKVLKYDQALRALREIVERSGRNPKDFALHSLRIGGASTLAAGGAVSERVIQREGRWKSDAYKVYTVNNSEDSQRVSRTLGDKD 443
[Close]
BLAST of mRNA_S-dermatodea_contig11330.860.1 vs. uniprot
Match: A0A0L6WS72_9AGAR (Uncharacterized protein (Fragment) n=1 Tax=Termitomyces sp. J132 TaxID=1306850 RepID=A0A0L6WS72_9AGAR)

HSP 1 Score: 49.3 bits (116), Expect = 7.900e-5
Identity = 31/94 (32.98%), Postives = 48/94 (51.06%), Query Frame = 1 
Query:    4 PAKAPLASYRMVSGECAVLSQSQGTRALREFVAKAGMQPHEFALHP---GGATQLCAGGVAPHVLQRQGRWNSDAYKVYARDNGKYTGRLSDML 276
            P KA    +    G+   LS +    A+R  +A AG+ P  FA H    G A+   A G + + +Q  GRW+SD+YK+Y +++      LS +L
Sbjct:   87 PCKAQAPLFEEPGGKA--LSYTYFVNAIRSALALAGLSPECFAGHSCGIGAASAAAAAGYSDYEVQLLGRWHSDSYKLYIKNDSSQILHLSSLL 178
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11330.860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCI7_9PHAE1.640e-1651.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0L6WS72_9AGAR7.900e-532.98Uncharacterized protein (Fragment) n=1 Tax=Termito... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11330contigS-dermatodea_contig11330:6138..6443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924198.1019332-CDS-S-dermatodea_contig11330:6137..64431622924198.1019332-CDS-S-dermatodea_contig11330:6137..6443Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11330 6138..6443 +
1694079086.0685623-CDS-S-dermatodea_contig11330:6137..64431694079086.0685623-CDS-S-dermatodea_contig11330:6137..6443Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11330 6138..6443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11330.860.1prot_S-dermatodea_contig11330.860.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11330 6138..6443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11330.860.1

>prot_S-dermatodea_contig11330.860.1 ID=prot_S-dermatodea_contig11330.860.1|Name=mRNA_S-dermatodea_contig11330.860.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
LPAKAPLASYRMVSGECAVLSQSQGTRALREFVAKAGMQPHEFALHPGGA
TQLCAGGVAPHVLQRQGRWNSDAYKVYARDNGKYTGRLSDMLDNVDGDRG
TS
back to top

mRNA from alignment at S-dermatodea_contig11330:6138..6443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11330.860.1 ID=mRNA_S-dermatodea_contig11330.860.1|Name=mRNA_S-dermatodea_contig11330.860.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at S-dermatodea_contig11330:6138..6443+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCCCCGCCAAAGCACCCCTGGCGTCATACCGTATGGTTTCTGGTGAGTG
CGCCGTTCTTTCACAGAGTCAGGGTACGCGAGCGTTGCGAGAGTTTGTAG
CGAAGGCGGGTATGCAACCCCACGAGTTTGCGCTGCATCCCGGCGGCGCG
ACGCAACTCTGCGCGGGCGGGGTAGCCCCGCACGTCTTGCAGAGACAAGG
TAGATGGAATTCTGACGCGTATAAGGTCTATGCGAGGGATAACGGCAAAT
ATACTGGGCGCCTGTCTGATATGCTAGATAATGTTGACGGCGACCGGGGA
ACGAGT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11330:6138..6443+

>mRNA_S-dermatodea_contig11330.860.1 ID=mRNA_S-dermatodea_contig11330.860.1|Name=mRNA_S-dermatodea_contig11330.860.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig11330:6138..6443+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCCCCGCCAAAGCACCCCTGGCGTCATACCGTATGGTTTCTGGTGAGTG
CGCCGTTCTTTCACAGAGTCAGGGTACGCGAGCGTTGCGAGAGTTTGTAG
CGAAGGCGGGTATGCAACCCCACGAGTTTGCGCTGCATCCCGGCGGCGCG
ACGCAACTCTGCGCGGGCGGGGTAGCCCCGCACGTCTTGCAGAGACAAGG
TAGATGGAATTCTGACGCGTATAAGGTCTATGCGAGGGATAACGGCAAAT
ATACTGGGCGCCTGTCTGATATGCTAGATAATGTTGACGGCGACCGGGGA
ACGAGTCTCCCCGCCAAAGCACCCCTGGCGTCATACCGTATGGTTTCTGG
TGAGTGCGCCGTTCTTTCACAGAGTCAGGGTACGCGAGCGTTGCGAGAGT
TTGTAGCGAAGGCGGGTATGCAACCCCACGAGTTTGCGCTGCATCCCGGC
GGCGCGACGCAACTCTGCGCGGGCGGGGTAGCCCCGCACGTCTTGCAGAG
ACAAGGTAGATGGAATTCTGACGCGTATAAGGTCTATGCGAGGGATAACG
GCAAATATACTGGGCGCCTGTCTGATATGCTAGATAATGTTGACGGCGAC
CGGGGAACGAGT
back to top