mRNA_S-dermatodea_contig11324.858.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11324.858.1
Unique NamemRNA_S-dermatodea_contig11324.858.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11324.858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11324contigS-dermatodea_contig11324:4053..5376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size540
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924197.7490702-CDS-S-dermatodea_contig11324:4052..41531622924197.7490702-CDS-S-dermatodea_contig11324:4052..4153Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11324 4053..4153 +
1694079085.7044382-CDS-S-dermatodea_contig11324:4052..41531694079085.7044382-CDS-S-dermatodea_contig11324:4052..4153Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11324 4053..4153 +
1622924197.7611175-CDS-S-dermatodea_contig11324:4938..53741622924197.7611175-CDS-S-dermatodea_contig11324:4938..5374Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11324 4939..5374 +
1694079085.7137823-CDS-S-dermatodea_contig11324:4938..53741694079085.7137823-CDS-S-dermatodea_contig11324:4938..5374Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11324 4939..5374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11324.858.1prot_S-dermatodea_contig11324.858.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11324 4053..5374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11324.858.1

>prot_S-dermatodea_contig11324.858.1 ID=prot_S-dermatodea_contig11324.858.1|Name=mRNA_S-dermatodea_contig11324.858.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=179bp
TPKNSRKARTATDETGYPKSSQDSRGRPANDTNRMATMVMLSKRRQEPSS
VLVARGRFRSANSTWKTPKPMNPRQQRHQTFPQDHGPAPMSPRPSFQVPL
LPLGPLSLPEPEISVAKRTDSVSSEDNMHGFTLESQTTLRTWRTTQYIQD
CLFGKIMLAVEVKDPALAGREGANAAAPP
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mRNA from alignment at S-dermatodea_contig11324:4053..5376+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11324.858.1 ID=mRNA_S-dermatodea_contig11324.858.1|Name=mRNA_S-dermatodea_contig11324.858.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1324bp|location=Sequence derived from alignment at S-dermatodea_contig11324:4053..5376+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACACCCAAAAACTCACGCAAGGCCCGCACAGCGACGGACGAAACCGGATA
CCCGAAATCGAGTCAGGACTCACGAGGAAGGCCGGCGAACGACACCAACA
GGTAGCCACCTGGGTCGCCCTTTGGGTTGCTTTTGCAGACTAACACCTCG
GTTCTCGGCCGAGGTGTTGCTTTCTTCCCATGTGGAACAGCAGTAGTGCC
CGTGTCCAAGTTATGTTGCTATCATACTGTAGCTCGACATCAACAACCCA
GCTGGCTTCCTGGGCACAGACAGCAGCGGCCCCCAGTCTTTAGCGTCAGT
CGCGTCGGTCGTGCCGCGGAGCGCACGCACTTTCTCTGTTGCCCGTGCGA
GTGGTCCGCCGTCGCAAGGTGGTTTCCAAATGGACAGAACTATATATCCG
CCTAAAATCGCGCGCTTGTACAAACAACCTATCATACTTGTTGCAGTCGA
GACGCCGTCTCGACGTCTCGACTGCAACCCCTCAGATTTCAACACATAGC
ATCGGTATACCCGCCGCATGTGACACTTGAGTCTCCACCCAAGCGCTGAT
GAACACCCACGGCGTTGGCGCTCTCACGCGAAAACTGCCTCGTATATATG
ATAATCACAGTAGTGCACGTTCCGGCAGCCCTTGGGTTGATCTTGTTCTT
CCACCAAATTTTCACGGAGCGAAAAAAAACAACAACCAAATCCCAGTCGC
CATACGCAAAAATGACATTTTGTTTTTTTTATAGGTATTTTTCCAAAATA
TGTACCAGGTACAGTACAGCAGTGCAGTATCATACTATTAATACTGTATA
TGATGGTTGTACACGAACTTAGGTCAACCATCGTGCCGCGCACGCACCCG
CCCGTCCCCACCCGGCCCCTCCCTACCTGCCAGCAGAATGGCCACGATGG
TGATGCTGTCGAAGCGGCGGCAGGAGCCGAGCTCCGTGCTCGTCGCGCGC
GGGCGGTTCCGGTCCGCTAACTCTACTTGGAAAACGCCAAAGCCCATGAA
CCCAAGGCAACAACGTCACCAGACGTTCCCCCAGGACCACGGCCCCGCCC
CGATGTCCCCACGTCCAAGTTTTCAAGTGCCCCTCTTACCGCTCGGGCCG
CTCAGCTTGCCTGAACCCGAAATCAGCGTGGCTAAGAGGACGGACTCGGT
TTCGTCAGAGGACAACATGCATGGGTTCACCTTGGAATCACAGACGACCC
TCCGCACTTGGAGGACAACACAGTATATCCAGGATTGCCTGTTTGGCAAG
ATCATGCTCGCCGTCGAAGTGAAAGACCCGGCGCTCGCGGGGCGGGAGGG
TGCGAACGCGGCGGCGCCTCCGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11324:4053..5376+

>mRNA_S-dermatodea_contig11324.858.1 ID=mRNA_S-dermatodea_contig11324.858.1|Name=mRNA_S-dermatodea_contig11324.858.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at S-dermatodea_contig11324:4053..5376+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACACCCAAAAACTCACGCAAGGCCCGCACAGCGACGGACGAAACCGGATA
CCCGAAATCGAGTCAGGACTCACGAGGAAGGCCGGCGAACGACACCAACA
GACACCCAAAAACTCACGCAAGGCCCGCACAGCGACGGACGAAACCGGAT
ACCCGAAATCGAGTCAGGACTCACGAGGAAGGCCGGCGAACGACACCAAC
AGAATGGCCACGATGGTGATGCTGTCGAAGCGGCGGCAGGAGCCGAGCTC
CGTGCTCGTCGCGCGCGGGCGGTTCCGGTCCGCTAACTCTACTTGGAAAA
CGCCAAAGCCCATGAACCCAAGGCAACAACGTCACCAGACGTTCCCCCAG
GACCACGGCCCCGCCCCGATGTCCCCACGTCCAAGTTTTCAAGTGCCCCT
CTTACCGCTCGGGCCGCTCAGCTTGCCTGAACCCGAAATCAGCGTGGCTA
AGAGGACGGACTCGGTTTCGTCAGAGGACAACATGCATGGGTTCACCTTG
GAATCACAGACGACCCTCCGCACTTGGAGGACAACACAGTATATCCAGGA
TTGCCTGTTTGGCAAGATCATGCTCGCCGTCGAAGTGAAAGACCCGGCGC
TCGCGGGGCGGGAGGGTGCGAACGCGGCGGCGCCTCCGAATGGCCACGAT
GGTGATGCTGTCGAAGCGGCGGCAGGAGCCGAGCTCCGTGCTCGTCGCGC
GCGGGCGGTTCCGGTCCGCTAACTCTACTTGGAAAACGCCAAAGCCCATG
AACCCAAGGCAACAACGTCACCAGACGTTCCCCCAGGACCACGGCCCCGC
CCCGATGTCCCCACGTCCAAGTTTTCAAGTGCCCCTCTTACCGCTCGGGC
CGCTCAGCTTGCCTGAACCCGAAATCAGCGTGGCTAAGAGGACGGACTCG
GTTTCGTCAGAGGACAACATGCATGGGTTCACCTTGGAATCACAGACGAC
CCTCCGCACTTGGAGGACAACACAGTATATCCAGGATTGCCTGTTTGGCA
AGATCATGCTCGCCGTCGAAGTGAAAGACCCGGCGCTCGCGGGGCGGGAG
GGTGCGAACGCGGCGGCGCCTCCG
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