mRNA_S-dermatodea_contig11310.848.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11310.848.1
Unique NamemRNA_S-dermatodea_contig11310.848.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11310.848.1 vs. uniprot
Match: A0A813GDE5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GDE5_POLGL)

HSP 1 Score: 55.8 bits (133), Expect = 4.220e-5
Identity = 53/161 (32.92%), Postives = 74/161 (45.96%), Query Frame = 3 
Query:   54 RPSALLPPHAVLEHVLGSLRTPDFPTDGVGLQQAFLFSALDHEV--SRGPVDYRRDLSDEDEQQPRY--LDKESYTAVVKNALGFLVGM--SEFSMSGAPIFSEDDHRVTFPMRIIPDQHTSALRWVDAD---------FRLGRVRDGSHKDCWLVERIIV 491
            RPSALLPP  V+EHVL SL +          QQAF FS L+ E    R P   R++      + P +  L+  +++ ++     FL+    S       P++SEDD RV+F   +I    T    W   D           L R   G+HKDCWLV  + +
Sbjct:  100 RPSALLPPDRVMEHVLKSLASLHIAE---ATQQAFTFSWLEEEKLSDRTPASSRQNW-----KFPGHDLLEPAAFSQMLYEDYSFLLDRPYSNTRHLALPVWSEDDRRVSF---LIALDET----WQPGDGPHPGPSLMMTLRRPALGTHKDCWLVHNVAL 245
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BLAST of mRNA_S-dermatodea_contig11310.848.1 vs. uniprot
Match: A0A813IIP7_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IIP7_POLGL)

HSP 1 Score: 56.6 bits (135), Expect = 9.010e-5
Identity = 60/194 (30.93%), Postives = 86/194 (44.33%), Query Frame = 3 
Query:   54 RPSALLPPHAVLEHVLGSLRTPDFPTDGVGLQQAFLFSALDHEV--SRGPVDYRRDLSDEDEQQPRY--LDKESYTAVVKNALGFLVGM--SEFSMSGAPIFSEDDHRVTFPMRIIPDQHTSALRWVDAD---------FRLGRVRDGSHKDCWLVERIIVRACGGMPSTQGY*ALGPLSPNSGAIGTYIYSIN 590
            RPSALLPP  V+EHVL SL +          QQAF FS L+ E    R P   R++      + P +  L+  +++ ++     FL+    S       P++SEDD RV+F   +I    T    W   D           L R   G+HKDCWLV  + +   G   S  G+    P S        Y+Y+++
Sbjct:  100 RPSALLPPDRVMEHVLKSLASLHIAE---ATQQAFTFSWLEEEKLSDRTPASSRQNW-----KFPGHDLLEPAAFSQMLYEDYSFLLDRPYSNTRHLALPVWSEDDRRVSF---LIALDET----WQPGDGPHPGPSLMMTLRRPALGTHKDCWLVHNVALMP-GLFGSRSGFAMSKPWS--------YLYALD 269
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11310.848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A813GDE5_POLGL4.220e-532.92Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813IIP7_POLGL9.010e-530.93Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11310contigS-dermatodea_contig11310:984..6367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_002650.1
Hectar predicted targeting categoryother localisation
Exons4
Model size1353
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11310.848.1prot_S-dermatodea_contig11310.848.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11310 1807..2609 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924196.8568978-UTR-S-dermatodea_contig11310:983..18061622924196.8568978-UTR-S-dermatodea_contig11310:983..1806Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11310 984..1806 -
1694079085.0757895-UTR-S-dermatodea_contig11310:983..18061694079085.0757895-UTR-S-dermatodea_contig11310:983..1806Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11310 984..1806 -
1622924196.8824-UTR-S-dermatodea_contig11310:2609..26701622924196.8824-UTR-S-dermatodea_contig11310:2609..2670Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11310 2610..2670 -
1694079085.1020527-UTR-S-dermatodea_contig11310:2609..26701694079085.1020527-UTR-S-dermatodea_contig11310:2609..2670Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11310 2610..2670 -
1622924196.8912609-UTR-S-dermatodea_contig11310:3032..31241622924196.8912609-UTR-S-dermatodea_contig11310:3032..3124Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11310 3033..3124 -
1694079085.1114385-UTR-S-dermatodea_contig11310:3032..31241694079085.1114385-UTR-S-dermatodea_contig11310:3032..3124Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11310 3033..3124 -
1622924196.90558-UTR-S-dermatodea_contig11310:6215..63671622924196.90558-UTR-S-dermatodea_contig11310:6215..6367Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11310 6216..6367 -
1694079085.1232793-UTR-S-dermatodea_contig11310:6215..63671694079085.1232793-UTR-S-dermatodea_contig11310:6215..6367Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11310 6216..6367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924196.866059-CDS-S-dermatodea_contig11310:1806..19651622924196.866059-CDS-S-dermatodea_contig11310:1806..1965Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11310 1807..1965 -
1694079085.0850477-CDS-S-dermatodea_contig11310:1806..19651694079085.0850477-CDS-S-dermatodea_contig11310:1806..1965Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11310 1807..1965 -
1622924196.8742325-CDS-S-dermatodea_contig11310:2543..26091622924196.8742325-CDS-S-dermatodea_contig11310:2543..2609Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11310 2544..2609 -
1694079085.093057-CDS-S-dermatodea_contig11310:2543..26091694079085.093057-CDS-S-dermatodea_contig11310:2543..2609Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11310 2544..2609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11310.848.1

>prot_S-dermatodea_contig11310.848.1 ID=prot_S-dermatodea_contig11310.848.1|Name=mRNA_S-dermatodea_contig11310.848.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=75bp
MSEFSMSGAPIFSEDDHRVTFPMRIIPDQHTSALRWVDADFRLGRVRDGS
HKDCWLVERIIVRACGGMPSTQGY*
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mRNA from alignment at S-dermatodea_contig11310:984..6367-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11310.848.1 ID=mRNA_S-dermatodea_contig11310.848.1|Name=mRNA_S-dermatodea_contig11310.848.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5384bp|location=Sequence derived from alignment at S-dermatodea_contig11310:984..6367- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTGAACCAACGGGAAAGCCTGCGGCGAAGAGAGAGTGTTCGTCTCCTC
AAGCGGCCTTCCGCTCTTTTGCCTCCTCACGCCGTGTTGGAGCATGTGCT
GGGCTCGCTCCGGACACCCGACTTCCCTACAGATGGTGTTGGGTTGCAGC
AGGTAAGTGCACTTTGCGTGTTGTAGGTGGGGTTGGAGTACGGCATCATG
CTCTTCTCGTGGACCCCACGGAGTGCGATTGGCAAATCGTGGCCCCGGGC
GTTTTTTGTGGCGCTGCTCGCGCCAAGGGAGCGAGAGACAGGACGCTGAT
AGCGCCGAGAATGGTGTTCAACTACGCTTTCACTTGAAACACGGAAATTT
CTGTGACCGGAAAAGCTTAGAGGACAATGTATAGCATGTGCCAGTCGCGA
GTTTAAAGGAGAGCACGGCTCCGTTGTAGTGGTAACACGGGCTAAGTTCC
TGAAGCATGGTGCTGTTGGCTTTCGTGTGCATAACGTATTACCGCAACAT
TTCCTGGGATGTCTACTGTAGTCGCCACCCCAGGGTTGGTGTACTATTTT
TGGCGATATTTTAATGCTTGACGCGGCACATCGTAAAAAGTTTTATTTGC
CGTGTTGCGCCAACTTGACCGCACGGTATGTGATCCACTCGTCCAGCAGT
TCACCGGTGACATCAACGTTTCGGAAGGTGGAGGTCGCGGGTTGAAGCCC
TGACGGAGTCAAGTTTGTTTTATTTGCTCTGCCGCAGAAAGCGTGAAAGC
GGGAGCAAGCATACACTTATACAAATCGGTAATCTGCGGGACTACTGAAC
CGAATCATGATGGTGATGATAATGATGGTCTAACATTAGCTGATATCCAA
ACCCAGCCGTGGTTACGAGATCGATGAATCAAGAGAAAGTAAACGAATGG
TCGCTAGAAGAATACATGAAACGTAACTACTTACGACGATGTCTGGAAAT
TGTTCACAACAGCTACACTGATTCTAGATGATAGTGCCATGATACAAAGT
ACGGCTAAACAAGTACAGTATCATATTCACACAACGTAGGTCTGCTCAGG
GGCTCAATCAGGCTTGAGAAAACCAAAGTGGGGGTGAGGTAATATGTAAC
GTTGGTGCAGATGCTATGAACACCCGGCAACAGCAGGATAATCAAATTAA
TACGCTTGTAATCGTACGTAAGCACACAACGACTGGCATTATCACCGAGT
ACCCAAATTGGCGACCAAAATATTGCCCCTCTCACTCCCACAAACCACAA
CCCTCAAGGAGCAGAATCGAAGCATTTCGCTCAACCGGCCTTCTCGAGGG
TGGCCTTCCTGTTTGCTGTCCGCGTTTTGCTTCTCGTCGGGCTTGTCTCT
CGTGGCGGGCCTTAGACTTGACAAGGTCCCGTTCACACCGTGCTTTCACG
AAATCTTTCCCCCCCCTTTCTCCGCACCTGACTTTCTAGCGGCAACGTTA
CAATCGGAGTTCTCTACCCCATAAGTAAACGGTCCCGCTCCTCCCCGATG
GTGAGCACAGTACTTTGCGCCTGAAGGCTAACCTTTAGGCACCCTATCCA
CTGCACCCGAGGTCGGCCTGGCAGTTTTCGCCCTCTCGTGGCCAACCTCC
CAGGCATGGTTCGCTTTGAAGGACGCGTGCCCTCTTGCCGACCTTGTCTT
GCCGGACCTCGGTCTCTGCAAACCAAAGTCGTCGTTTACGGATGGTCGTC
TCGATGCTCTCATACCCTGCAAGCTCAAGTGTACATCTGTACGACGTGAA
ATTGTCGTGTGTCTTTTCCGCTGGAAGCCAACGACGCGCAGGAGGAGCCT
GTGGTGCCTGCGCACTGCTCCCGAATGATAAATCACGTTGCGCAAACGCA
CAGCAATGCTTGCATTGATTGGGGTTTAAGCATGCGAACTTTCAGCGCAA
GTGGGGCGTTCGGCTGACCGAAACCTTGTGACCTGTTCTTGCCAAGGCTG
GCCGAGGCAGCGATGATGCGGCGGTAGATATCGCTTGTAAGGTCTGCGCT
TTCGCTGATAGTGCTACCGAGGTCGACAAACCTCGCAGTCTGCTTGTGGC
ATTGCCCTGCGGGCCCAACCTTCGTTGTGTTAGCTTGTATGTTTGGTGCC
GCCATGCACATGGTCTCCGTCTTCTTCTCCGACACGGTTAGGCCGAATGC
TTGGCATATCTCAACCATAACCCCCGCAATCTTCGCAAATCCACGTGTCG
ACCTTGAGATCAACCCGGCATCATCAGCGTCACCGCCCTCTGGGCCTTCG
CTTGTGACGTCTCCTGTGCGTCCGGGACGTCGTCCAAAGGCACCAAGACC
GGTTCGAGGTATTCATCCGCACTGAATCGCTGCAAGACGACGATCGGCAC
TGCCGCGAAAAATATGTTGATCAACAGCGGCAAAAACATGTATCCTTGCC
GGAGACCTTTTCACGCTTCGAACCGTCGAGGGTTTTCGCCGTCGTCTGGC
CTCACGCGCGCTCTCTCTCGTGCCATCGCGGAAGTCTCGAATGAGTTTGC
TAATGGTGTCGGGAACTCCGAAAAGGGGTATTAGTAGTACTGGCCACTCC
ACTCCGAAACAGACCAATACCGACCACGATAGGACACGATCGACGGAGTC
GTGTACTCCTTTTTCAGGTCAACTACGCACATGTTCACCGGGATGGCGTT
CTCCTGCCCTAACGTAGCTCCTGTAGATGGCGTACCACTACCACCGTATC
AGTAGTGAAACGCCGAGATCGGAATCCGCACTGCTCTTCCGGGAGTATCC
CTATCTTCACGTAGAAGCCACTGAGCCGGTTAGCCACGATATACCTTACC
GGCGTGTGCGACGAATTAAACCCCCCTACAGTTGTCGCGCTCCAGCCCAT
CTCTTTTTTTTTGTGCGGCACTGTGATGGTGGCATCCTTCCATTCGTGGG
AGGTCTCCCCGGTTATTACGCGCAACGGCTGAATGTTTTGGGAAGCCTCT
GGGGTTTTTTAACCGTTCCCGCCCAGTCCAAGTTTAAACTCCGGTACGAT
AAAAATCAAAACGCACGCACTGGGGAGAGGGTATTACCCCTTTTGAACGT
CGACGGGATCCGCATTTCTTCGGTCGGTGGGACACGAAACAAATGCATTA
AACATGCATCATTCTACGACGAGAGGTGGGGTCCAGTTCGTTGTACGTCC
GCTTGCCAGGCGACCGCACCATCCCATAATATATTGTGCGCGTCGGACTG
ATATCCACTCCAACCGGCGTCTTTCGGTGCGCCCATTAAATAGGCGTTTC
TCTTCAGTGCGCTGGACCATGAAGTAAGCAGAGGGCCTGTGGACTACCGG
CGGGACTTGTCTGATGAGGACGAACAACAACCAAGGTGAGAGCATTTGTG
CGAGTTCCGAGCTCCCCTCTCCTTTATGTTTCTCTTCTTCCAGGACATTG
CGTTCATGGTCGGTCGGTACGCTCTTGCTCAAGGTTTAGATTGCAGCAGA
CCGTCAGTTGCTGCCATCGTTTCTTCAAGCGTTTACGTTCGTGGCGGCCG
TCAATAGTGCAAAATGCGCGATCATTGCGTTCCTGATGCACCAGTCCCAT
TCGGTCGCAGGCGGTATCGCTTGTCATATGAACGATCAAGGTTCATGGTG
CCCTGTTCGTCAGCGTCCGCTTTTCCCCGTCGAGCTCGCTGCACATTTCA
GTCAAATCGTAACCTTGGTATCGCCGAATCCGATCGTATGGCTGCAGGTA
TCTCGACAAAGAGTCATACACAGCAGTGGTGAAGAACGCGCTGGGTTTCC
TCGTGGGAATGTCTGAGTTTTCCATGTCTGGAGCTCCAATATTCTCGGAA
GATGATCACCGTGTCACCTTCCCGGTAAGATGTCTCGAGGGGCCGGATCG
TCATACATTGGTTAGTTGGAGCGTGGGGGTGGGGCGTCAGGGGATTTTCA
AACCTAGGGACGTTTCCTTCCAAAGCCTCGTGGCCATGGGGATATTCATT
ACTCCCGTCGTACTTCGACTACATCCAAGAACTGTAATCTTATTAATTAA
TGCAACAATGACCGATTGTGTATATTGATTTTAGACAAGGCTGCTGTCTG
ATGCAAAAAAACTTGATGTTTGTGTTGAGCGATTTTGTTTTTTATAAAAG
CGAAAACACAGCAGCGACGCGCACAGCAGCGACACGCACAGTAAGTAGCT
CGACCGCGTTCGACCTCCGTGTCGCGTTCCGTCGGCATATCGTATATGCC
AACGCACACCTCACACGGGCGTAGCCGTGGCTACCCACTAGTTTCAAACT
TAACGGGTTGCTCAGGCTGCACGCCTTCCGAATATTTTGGATATCAGTGT
TAACAGTAGCATGAGCCCTTGATCAATACCCCTGCCATTTACACGTTTCC
CTCTCGACTCACGCTCCCGTCTCTTGACACCCTCGTTTACGCCGCCATCC
AGATGAGGATTATTCCCGACCAGCACACGTCGGCACTGAGATGGGTCGAT
GCGGACTTTCGGTTAGGACGTGTTAGAGACGGGAGCCACAAGGACTGTTG
GCTTGTGGAAAGGATCATCGTGAGGGCTTGCGGAGGGATGCCAAGTACAC
AAGGGTACTGAGCCTTGGGGCCTTTGTCGCCTAATTCTGGGGCAATAGGA
ACTTATATATACAGCATTAATCAAAATTTCCCGGCCGATGCCAAAAGTCC
TGCCCAAAAATATGTATGGAGCCTGCACATAAAACAAGCGCGGGCACCCT
GAGAGGTTATGCCACAACTTGTGGGAACCTGTTTTATTTGTATTTTCTGA
AATTCAAAGTTCTAAGAGCACCCTTGCGTATAGGCTTTCCGGGAGGTGGA
TCCTTGTCCGTATGGCGTCGTAGCGTTAAACGGGTTTTGCATATAGCGCC
GTTCTCAGGGTAGAGGCGAGTTTAAAAGTTCGTGTGGCGGTGCCGAGCTC
AAGCATGTGTTGAGAGGTAGGTATTGTCGGGTGCCTTCTGCAGAGAAGCT
GTTCATGATGCTCATACTAACGGTAGCTTCGCTGTCCTACGGGCCACGCG
TCGATCGTCGGTACGACCGTGCAATTTGGATGTGAAACACATGCAATTTG
GATGTGAAACACAAAATTGGCACTTGGCATGGGATGGTGAGTGTAGGAAT
GTCCGCCACCGAATTGTGAGGCGAAACGTGGACGCGTACGAAGTATGGAC
GAAGTAACTTTAGGGCACATTAATCGTGCGGCTGCTGTACGTCGTACGTG
TGGCGTTTCGTCGTCAAAGCACCACACCATTAATAAAACCAACCGAGCTT
GCACAGCTGTACATAGGGCTGTAGTAATTCCAAAAGCCTTTTCGTTCTTG
ATGAGAGGACCTTTGAGAGGTGCGAGGTTCTTCATAACAAAGATCTAGTA
GTAAATATGATTTGCAATATAATAGCAGAGGAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11310:984..6367-

>mRNA_S-dermatodea_contig11310.848.1 ID=mRNA_S-dermatodea_contig11310.848.1|Name=mRNA_S-dermatodea_contig11310.848.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at S-dermatodea_contig11310:984..6367- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCTGAGTTTTCCATGTCTGGAGCTCCAATATTCTCGGAAGATGATCA
CCGTGTCACCTTCCCGATGTCTGAGTTTTCCATGTCTGGAGCTCCAATAT
TCTCGGAAGATGATCACCGTGTCACCTTCCCGATGAGGATTATTCCCGAC
CAGCACACGTCGGCACTGAGATGGGTCGATGCGGACTTTCGGTTAGGACG
TGTTAGAGACGGGAGCCACAAGGACTGTTGGCTTGTGGAAAGGATCATCG
TGAGGGCTTGCGGAGGGATGCCAAGTACACAAGGGTACTGAATGAGGATT
ATTCCCGACCAGCACACGTCGGCACTGAGATGGGTCGATGCGGACTTTCG
GTTAGGACGTGTTAGAGACGGGAGCCACAAGGACTGTTGGCTTGTGGAAA
GGATCATCGTGAGGGCTTGCGGAGGGATGCCAAGTACACAAGGGTACTGA
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