mRNA_S-dermatodea_contig11305.843.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11305.843.1
Unique NamemRNA_S-dermatodea_contig11305.843.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11305.843.1 vs. uniprot
Match: D7G3Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z9_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 2.760e-73
Identity = 122/176 (69.32%), Postives = 144/176 (81.82%), Query Frame = 1 
Query:  127 SVASTANQILFKNELYTSMKQKTMDQELMARLNREAQEDDNKRFEKAKAKVARLENKRKILVGVGDMVGPPGCDPNPFSSASIAVELSPNDTVWDVKKKLIVAVPWKDEAPDDFGLFDDFSEEPLKDAMAIESALAANKPASAGRAGGKRGTGWGRSPAPIRLPPPYVGVVWAARL 654
            SVASTANQILFKNELYTSMKQKTMDQELMAR NREA E++ ++FEKA+AKVARLENKRK+L+GVGDMVGPPGCDP+  SSAS+AV+L   DTV DVKK+LI    W+DE P DFGLF+D SEEPL D  +I++ALA +KP+SA +   +RG     + A IRLP PYVGV+WAARL
Sbjct:   36 SVASTANQILFKNELYTSMKQKTMDQELMARFNREAHEEEKRKFEKARAKVARLENKRKVLIGVGDMVGPPGCDPSECSSASVAVDLGLQDTVRDVKKRLIAEAGWRDELPSDFGLFNDVSEEPLMDGQSIDAALAPSKPSSAKKGVSRRGGSRATAAASIRLPRPYVGVLWAARL 211
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BLAST of mRNA_S-dermatodea_contig11305.843.1 vs. uniprot
Match: A0A6H5K1B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B8_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 5.150e-43
Identity = 71/117 (60.68%), Postives = 91/117 (77.78%), Query Frame = 1 
Query:  304 ILVGVGDMVGPPGCDPNPFSSASIAVELSPNDTVWDVKKKLIVAVPWKDEAPDDFGLFDDFSEEPLKDAMAIESALAANKPASAGRAGGKRGTGWGRSPAPIRLPPPYVGVVWAARL 654
            +L+GVGDMVGPPGCDP+ +SSAS+AV++ P DTVWDVKK+LI    W DE P DFGLF+D S+EPL D  ++++ALA NKP+S+ +A  +RG     + A IRLP PYVGV+WAARL
Sbjct:   16 VLIGVGDMVGPPGCDPSEYSSASVAVDVGPQDTVWDVKKRLIAVAGWTDELPSDFGLFNDVSDEPLMDGQSVDAALAPNKPSSSKKAVSRRGGSRATAAASIRLPRPYVGVLWAARL 132
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11305.843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3Z9_ECTSI2.760e-7369.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1B8_9PHAE5.150e-4360.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11305contigS-dermatodea_contig11305:1684..3979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_000650.1
Exons3
Model size660
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11305.843.1prot_S-dermatodea_contig11305.843.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11305 1684..3979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924196.3884444-CDS-S-dermatodea_contig11305:1683..18451622924196.3884444-CDS-S-dermatodea_contig11305:1683..1845Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11305 1684..1845 +
1694079084.7344086-CDS-S-dermatodea_contig11305:1683..18451694079084.7344086-CDS-S-dermatodea_contig11305:1683..1845Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11305 1684..1845 +
1622924196.3989532-CDS-S-dermatodea_contig11305:3112..32531622924196.3989532-CDS-S-dermatodea_contig11305:3112..3253Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11305 3113..3253 +
1694079084.7453704-CDS-S-dermatodea_contig11305:3112..32531694079084.7453704-CDS-S-dermatodea_contig11305:3112..3253Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11305 3113..3253 +
1622924196.4093637-CDS-S-dermatodea_contig11305:3622..39791622924196.4093637-CDS-S-dermatodea_contig11305:3622..3979Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11305 3623..3979 +
1694079084.7537014-CDS-S-dermatodea_contig11305:3622..39791694079084.7537014-CDS-S-dermatodea_contig11305:3622..3979Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11305 3623..3979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11305.843.1

>prot_S-dermatodea_contig11305.843.1 ID=prot_S-dermatodea_contig11305.843.1|Name=mRNA_S-dermatodea_contig11305.843.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=220bp
MSADSQPPTISVKEAPAPPPSALPAAAAGAAASERTKSGHGSSVASTANQ
ILFKNELYTSMKQKTMDQELMARLNREAQEDDNKRFEKAKAKVARLENKR
KILVGVGDMVGPPGCDPNPFSSASIAVELSPNDTVWDVKKKLIVAVPWKD
EAPDDFGLFDDFSEEPLKDAMAIESALAANKPASAGRAGGKRGTGWGRSP
APIRLPPPYVGVVWAARLE*
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mRNA from alignment at S-dermatodea_contig11305:1684..3979+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11305.843.1 ID=mRNA_S-dermatodea_contig11305.843.1|Name=mRNA_S-dermatodea_contig11305.843.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2296bp|location=Sequence derived from alignment at S-dermatodea_contig11305:1684..3979+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCTGCCGATTCGCAACCCCCGACGATCTCCGTCAAGGAAGCCCCGGC
GCCGCCTCCTTCTGCCTTGCCTGCCGCGGCGGCAGGAGCAGCGGCGAGCG
AGCGCACAAAATCCGGGCATGGTAGTAGCGTTGCAAGCACCGCCAACCAG
ATCCTGTTCAAGGTTTGTCATAAGAAGTGTTTCATCTCCGTGTTTGTCTA
GGGCTTTCATACACGTGCCTTATATTAGAAGAAATGTGATTTTTCGAGCA
CACAAGACGGAGTTCTTGTGCTCGCCGTACTTGTATGCGCTTGTTTTCCG
CATGTATAATATTATTCGAGCGGGAGAAGAGCGTCCATGGCGCATTCGGA
ACCCAGTTTCCGCTCTTTGCTGCTCTGGGCACCCAAGCGAGTGAACCCAT
GAAAAATAACTTTGCATGAATCTGCTATGATATCATAGATACATCGATAA
CTGGCAAATACTTCAAGACACACTTGTACTCTATTTACAAGTAGGTTCAG
ATCCACCCCAGCAACCTCACCGCTCGCGTATCGCTTACTACTACTTGTTG
TATGGTATCATGCTGCATCTGAATACTACGTAGCAAAAGGTATCGCGTAC
AAAAGTGTGATAATCAAGATAATGATGATGATACAAGTATCATTGTGGCA
CGATACGAAACCCCGCTTCCGCTCACGGATCATCGACGGATATCCCATGG
AAGAAAAATTGGTTTCTGTCCCACGCATGCTCAGCGCGGCCCATAAAACG
GGACTGCGAGGTCGACTTGAAGCTTTGAACGAGGCACTTTTCCAGCACCC
TCGAACGCATTACTCCACTACTCGTGCAACTTTTGCTTATACCATACATA
AAAGCAAAACCAGCACTAGGTATATTCCAATACACCTCAAGCGCAGGCTA
TAGTTCAACCCATTCCCTCGAACCGACACAATGTACATCTCCTGCGTTGG
GTTCCGGGTCCCGGTTAGCGCTAGTAGGGATATTAATCCACAGCAAATGC
TACCTACCGTACCTGTTGTGTTGATGATATTACTTCTCTCTTTGCTTTTA
ATCTGTGGGTGGTCCGTGGATAGTCCACAAGGCGTCCTGAGATTGTCCAA
AACCGTGGACGATTCCACGAGCAGTCTGCCGATACCCCGGGATTTTTTTA
GTATCCACGAACGAACGCTTCGTGGTTGTTCGTAGCTGATCGACGGCCGT
TCACGGAGTCCGACGTTGTTTTAGCGCACCATCCACGGTTCGATATATCG
TCCATACATACCGTACAAAACGGCGGTAGTGACAACCCTCCGCTAAGACA
CGTCAGTTCACGCAGGCCGGACTTATGGCTTCAGCTTAACAAAATATCAA
ATATCGCGATGCTATGCTCTTTTCCTCCACGCCTTGTGAATTCCCCGACC
GGCCTCACCTGCTGTTGTACAATGTGTAGAACGAGCTCTACACGAGCATG
AAGCAGAAAACGATGGACCAGGAGCTCATGGCTAGACTCAACAGGGAAGC
CCAGGAGGACGATAATAAAAGGTTCGAGAAGGCCAAAGCAAAGGTGGCGA
GGCTCGAGAACAAGCGGAAGGTGGGGGTAGGAATCCGTGGTGCCTTCAAT
GCGCCAGGGCGTGGCCAGGCGCATGTCGAAAAACGTCGGACGGCGATTTA
TCGAGTGATATGTCAACAACTTGGGGGCTATGCCAGCGCTCGTGGATAGC
TCGAAAAATCCCGCTGTAGGCAGCAATCATTCACACTACGACGCCCCTCT
CTAGTCTCTCTCTGCTACCTTGATCGTCGGCCCCTCATTCGTCGCGAGTT
GGTCTGATGCAAAATCCCACGCATCCTTACCACACGACGACTGATACTCG
TTGTTTCCTACATTTTCGTAGCTAGCGTATCCTAATATATCTTTGAGTGC
CACTCAAGCACGGCCCACCCGGCGTCCTCCCCCCAACAGATCCTTGTGGG
CGTGGGCGATATGGTCGGCCCTCCAGGGTGCGATCCCAACCCCTTCTCTT
CCGCCTCTATCGCTGTGGAGCTATCGCCGAACGATACGGTTTGGGACGTC
AAGAAAAAGCTCATCGTCGCGGTGCCTTGGAAAGACGAGGCGCCCGACGA
TTTCGGTCTCTTTGATGACTTCTCCGAAGAGCCGCTTAAGGACGCGATGG
CGATCGAGTCGGCACTCGCAGCCAACAAACCAGCGTCAGCCGGGAGAGCG
GGGGGGAAACGGGGGACGGGGTGGGGCAGATCTCCCGCACCCATTCGGTT
GCCCCCGCCGTACGTTGGAGTAGTGTGGGCGGCGAGACTGGAATAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11305:1684..3979+

>mRNA_S-dermatodea_contig11305.843.1 ID=mRNA_S-dermatodea_contig11305.843.1|Name=mRNA_S-dermatodea_contig11305.843.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at S-dermatodea_contig11305:1684..3979+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCTGCCGATTCGCAACCCCCGACGATCTCCGTCAAGGAAGCCCCGGC
GCCGCCTCCTTCTGCCTTGCCTGCCGCGGCGGCAGGAGCAGCGGCGAGCG
AGCGCACAAAATCCGGGCATGGTAGTAGCGTTGCAAGCACCGCCAACCAG
ATCCTGTTCAAGATGTCTGCCGATTCGCAACCCCCGACGATCTCCGTCAA
GGAAGCCCCGGCGCCGCCTCCTTCTGCCTTGCCTGCCGCGGCGGCAGGAG
CAGCGGCGAGCGAGCGCACAAAATCCGGGCATGGTAGTAGCGTTGCAAGC
ACCGCCAACCAGATCCTGTTCAAGAACGAGCTCTACACGAGCATGAAGCA
GAAAACGATGGACCAGGAGCTCATGGCTAGACTCAACAGGGAAGCCCAGG
AGGACGATAATAAAAGGTTCGAGAAGGCCAAAGCAAAGGTGGCGAGGCTC
GAGAACAAGCGGAAGAACGAGCTCTACACGAGCATGAAGCAGAAAACGAT
GGACCAGGAGCTCATGGCTAGACTCAACAGGGAAGCCCAGGAGGACGATA
ATAAAAGGTTCGAGAAGGCCAAAGCAAAGGTGGCGAGGCTCGAGAACAAG
CGGAAGATCCTTGTGGGCGTGGGCGATATGGTCGGCCCTCCAGGGTGCGA
TCCCAACCCCTTCTCTTCCGCCTCTATCGCTGTGGAGCTATCGCCGAACG
ATACGGTTTGGGACGTCAAGAAAAAGCTCATCGTCGCGGTGCCTTGGAAA
GACGAGGCGCCCGACGATTTCGGTCTCTTTGATGACTTCTCCGAAGAGCC
GCTTAAGGACGCGATGGCGATCGAGTCGGCACTCGCAGCCAACAAACCAG
CGTCAGCCGGGAGAGCGGGGGGGAAACGGGGGACGGGGTGGGGCAGATCT
CCCGCACCCATTCGGTTGCCCCCGCCGTACGTTGGAGTAGTGTGGGCGGC
GAGACTGGAATAGATCCTTGTGGGCGTGGGCGATATGGTCGGCCCTCCAG
GGTGCGATCCCAACCCCTTCTCTTCCGCCTCTATCGCTGTGGAGCTATCG
CCGAACGATACGGTTTGGGACGTCAAGAAAAAGCTCATCGTCGCGGTGCC
TTGGAAAGACGAGGCGCCCGACGATTTCGGTCTCTTTGATGACTTCTCCG
AAGAGCCGCTTAAGGACGCGATGGCGATCGAGTCGGCACTCGCAGCCAAC
AAACCAGCGTCAGCCGGGAGAGCGGGGGGGAAACGGGGGACGGGGTGGGG
CAGATCTCCCGCACCCATTCGGTTGCCCCCGCCGTACGTTGGAGTAGTGT
GGGCGGCGAGACTGGAATAG
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