mRNA_S-dermatodea_contig11300.841.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11300.841.1
Unique NamemRNA_S-dermatodea_contig11300.841.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: A0A6H5L5M8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M8_9PHAE)

HSP 1 Score: 307 bits (787), Expect = 3.160e-94
Identity = 163/241 (67.63%), Postives = 186/241 (77.18%), Query Frame = 1
Query:    1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEVLPQLFKSEGDRIPAHFLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQEKQNAKMRFEFPQQEGQNLAQMFGVIEVRQG 723
            IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTH      MEECEALCQRIGIMVGGRLRCLG+SQHLKTRFGKGFQLEARV AI    LP+                    TD+MM  +A AT+G+G + +D  VLRA LAAAQAPELE E++  GRGA+I+H +  +G VP RDLA+WIC+EKKCS+VIAF Q+ F GA+++EKQNAKMRFEFP Q+ Q LAQMFGV+EV  G
Sbjct:  833 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHS-----MEECEALCQRIGIMVGGRLRCLGTSQHLKTRFGKGFQLEARVKAI----LPE-------------------ETDAMMTELASATNGQGTLGNDGGVLRAALAAAQAPELEAEVSPTGRGASIYHAIANQGGVPVRDLAAWICVEKKCSKVIAFMQQQFAGAVMREKQNAKMRFEFPPQKNQTLAQMFGVVEVFNG 1045          
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: D7FZE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE8_ECTSI)

HSP 1 Score: 310 bits (794), Expect = 1.800e-93
Identity = 165/237 (69.62%), Postives = 183/237 (77.22%), Query Frame = 1
Query:    1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEVLPQLFKSEGDRIPAHFLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQEKQNAKMRFEFPQQEGQNLAQMFGVIE 711
            IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTH      MEECEALCQRIGIMVGGRLRCLG+SQHLKTRFGKGFQLEARV AITHE                        TD+MMAT+A AT+G+G + +D  VLRA LAAAQAPELE E++  GRGA+I+H +  +G V  RDLA+WIC+EKKCSRVIAF Q+ F GA L+EKQNAKMRFEFP Q+ Q LAQMFG IE
Sbjct: 1700 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHS-----MEECEALCQRIGIMVGGRLRCLGTSQHLKTRFGKGFQLEARVKAITHE-----------------------ETDAMMATLAHATNGQGTLTNDGGVLRAALAAAQAPELEAEVSPTGRGASIYHAIANQGGVSVRDLAAWICVEKKCSRVIAFMQQHFAGAALREKQNAKMRFEFPPQKNQTLAQMFGFIE 1908          
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: D7FZE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE9_ECTSI)

HSP 1 Score: 305 bits (782), Expect = 7.370e-92
Identity = 162/243 (66.67%), Postives = 188/243 (77.37%), Query Frame = 1
Query:    1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEVLPQLFKSEGDRIPAHFLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQEKQNAKMRFEFPQQEGQNLAQMFGVIEVRQGAI 729
            IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTH      MEECEALCQRIGIMVGGRLRCLG+SQHLKTRFGKGFQLEARV AI    LP+                    TD+MMA +A AT+G+G + +D  VLRA LAAAQAP+LE E++  GRGA+I+H +  +G VP RDLA+WIC+EKKCS+VIAF Q+ F GA+++EKQNAKMRFEFP Q+ Q LAQMFGV+E  + A+
Sbjct: 1720 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHS-----MEECEALCQRIGIMVGGRLRCLGTSQHLKTRFGKGFQLEARVKAI----LPE-------------------ETDAMMAELAPATNGQGTLGNDGGVLRAALAAAQAPDLEAEVSATGRGASIYHAIANQGGVPVRDLAAWICVEKKCSKVIAFMQQQFAGAVMREKQNAKMRFEFPPQKNQTLAQMFGVVENEREAL 1934          
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: A0A6H5JVX0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVX0_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 1.730e-80
Identity = 152/262 (58.02%), Postives = 174/262 (66.41%), Query Frame = 1
Query:    1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEV------------LPQLFKSEGD------RIPAH-------FLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQEKQNAKMRFEFPQQEGQNLAQMFGVIE 711
            IVFLDEPSTGMDPMARR MWN IMRIVT+N+ CAMILTTH      MEECEALCQRIGIMVGGR+RCLGSSQHLKTRFGKGFQLEARV A++  V            L    K  G       R+P +       FL       D+M+ATIA AT G+  + S  E+    L AAQ PEL  EIT  GRGA ++H +     V ARD A+W+CLE+ CSRVIAF + SF+GA L+EKQNAKMRFE PQQE + L  MFG IE
Sbjct:  294 IVFLDEPSTGMDPMARRMMWNYIMRIVTQNRSCAMILTTHS-----MEECEALCQRIGIMVGGRMRCLGSSQHLKTRFGKGFQLEARVGAVSPTVSWSWAATTARKALSHRMKYFGIQSQQYCRLPFYNNPVLSLFLEKPQ-DIDAMLATIATATGGQASLPS--ELCGPALDAAQCPELAPEITPEGRGAMVYHALANERTVLARDFAAWLCLEQSCSRVIAFVESSFKGARLREKQNAKMRFEIPQQEDKTLGAMFGFIE 547          
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: D7FZA6_ECTSI (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA6_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 5.990e-77
Identity = 144/237 (60.76%), Postives = 163/237 (68.78%), Query Frame = 1
Query:    1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEVLPQLFKSEGDRIPAHFLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQEKQNAKMRFEFPQQEGQNLAQMFGVIE 711
            IVFLDEPSTGMDPMARR MWN IMRIVT+N+ CAMILTTH      MEECEALCQRIGIMVGGR+RCLGSSQHLKTRFGKGFQLEARV A+                       S    D+M+ATIA AT G+  + S  E+    L AAQ PE   EIT  GRGA ++H +     V ARD A+W+CLE+ CSRVIAF + SF+GA L+EKQNAKMRFE PQQE + L  MFG IE
Sbjct: 1722 IVFLDEPSTGMDPMARRMMWNYIMRIVTQNRSCAMILTTHS-----MEECEALCQRIGIMVGGRMRCLGSSQHLKTRFGKGFQLEARVGAV-----------------------SPTDIDAMLATIAPATGGQASLPS--ELCGPALDAAQCPEFAPEITAEGRGAMVYHALANERTVLARDFAAWLCLEQSCSRVIAFVESSFKGARLREKQNAKMRFEIPQQEDKTLGAMFGFIE 1928          
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: A0A7S3XYR3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYR3_HETAK)

HSP 1 Score: 187 bits (475), Expect = 1.200e-50
Identity = 108/245 (44.08%), Postives = 148/245 (60.41%), Query Frame = 1
Query:    1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEVLPQLFKSEGDRIPAHFLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELE--EEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQEKQNAKMRFEFPQQEGQNLAQMFGVIEVRQGAI 729
            +VFLDEPSTGMDP+ARRFMW+VI +I TE ++CA+ILTTH      MEECEALC RIGIMVGGRLRCLGS+Q LK+RFG GFQLE  +   + E L    +   +  PA                   A +G       ++    VLAA  A   +   +  E G GA ++H ++ RG V   DL ++   E++ ++  AF  ++F+GA+L+EKQ+ K+RFE+P Q G  L +MFG +E R+  +
Sbjct: 1712 LVFLDEPSTGMDPVARRFMWDVITKISTERQQCAVILTTHS-----MEECEALCTRIGIMVGGRLRCLGSAQRLKSRFGLGFQLELGLRLPSEEELADGLRRVAEGAPA-------------------AAAGGAAQRLAQQDFAPVLAALGADPAQWLPKFCETGAGALLYHELLARGGVALGDLVAFHARERRAAQAEAFVADTFKGAVLREKQSGKLRFEYPPQPGLALGEMFGALEDRRAQL 1932          
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: A0A7R9U8U7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8U7_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.630e-47
Identity = 103/241 (42.74%), Postives = 137/241 (56.85%), Query Frame = 1
Query:    1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEVLPQLFKSEGDRIPAHFLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQEKQNAKMRFEFP--QQEGQ--NLAQMFGVIE 711
            IVFLDEPSTGMDP+A+RFMW VI  I T   +CA+ILTTH      MEECEALC RIGIMVGGR RCLGS+Q LKT+FG G+QLEA +                 ++P+          +  +  +A A  G GE +  R+ L    A A    L + +T  G GA++   +   G + A D A+W+ LEK+   +    +E++ G  L+E Q  KMRFE P  Q +G   +LA +F V+E
Sbjct:   17 IVFLDEPSTGMDPLAKRFMWEVISAIATRQGKCAVILTTHS-----MEECEALCSRIGIMVGGRFRCLGSAQRLKTKFGLGYQLEASL-----------------KLPS----------EEEVTALASAMGGAGE-HITRDNLEEKFALAGGARLAKNVTPEGSGASVDFDLTHFGFIRAGDAATWLALEKEKQALTDALEETYPGVTLREAQGRKMRFEIPGSQADGAKLHLADVFDVLE 224          
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: K8YZT2_NANGC (Antibiotic transport system ATP-binding protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YZT2_NANGC)

HSP 1 Score: 169 bits (429), Expect = 1.950e-45
Identity = 100/249 (40.16%), Postives = 140/249 (56.22%), Query Frame = 1
Query:    1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEVLPQLFKSE-GDRIPAHFLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQEKQNAKMRFEFPQQE-----GQNLAQMFGVIEVRQGAI 729
            IV LDEPS+GMD +ARRFMW VI  I T+  EC +ILTTH      MEECEALC RIGIMVGGR RC+GS+QHLK+R+G G+QLE  V     E++P     + GD       R   P+ D+ +A +  A +           L   LAA       E I+  G GA +   +   G +  R+ A W  LE +   ++ F  +++  A+L+E+Q  K+RFE P ++      + L++MFG+IE  +G +
Sbjct:  302 IVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHS-----MEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGK--RMVLPADDTFLARLEGAAARLSTERFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSIGVREFAGWCSLEDRMESILRFIMDNYPDAVLRERQGTKVRFEIPSKDTNTGAARKLSEMFGLIEDNKGRL 543          
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: A0A6V1S0H3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S0H3_HETAK)

HSP 1 Score: 162 bits (411), Expect = 3.540e-45
Identity = 103/248 (41.53%), Postives = 138/248 (55.65%), Query Frame = 1
Query:    1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEVLP---QLFKSEGDRIPAHFLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQEKQNAKMRFEFPQQEGQN--LAQMFGVIEVRQGAI 729
            ++FLDEPSTGMDP+ARRFMW VI RI TE ++ A+ILTTH      MEECEALC RIGIMVGG+LRCLGS+QHLK+RFG G+QLE      T E L    +  ++EG ++    L              AL   G GE    R                 E    G  AT+ H +  +G V A +LA+W  L+ +   + A+   +F GA+L+E+Q  + RFE P + G    +A MF  +E ++ A+
Sbjct:   54 LIFLDEPSTGMDPVARRFMWEVITRISTERQQAAIILTTHS-----MEECEALCTRIGIMVGGQLRCLGSAQHLKSRFGLGYQLELGARTATAEELATATEKLQAEGGQLSEGQLG------------AALQRLGYGEDYDWR----------------TEFLPSGSAATLGHELAVKGAVSAEELAAWALLDGRVRALHAWVGRAFEGAVLRERQAGRARFEVPHRAGGRGGMAGMFAALEGQREAL 268          
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: A0A835YSC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSC0_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.770e-44
Identity = 104/259 (40.15%), Postives = 132/259 (50.97%), Query Frame = 1
Query:    1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLE---ARVTAITHEVLPQLFKSEGDRIPAHFLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSR-------------------VIAFAQESFRGAILQEKQNAKMRFEFPQQEGQNLAQMFGVIE 711
            IVFLDEPSTG+DP+ARR MW VI RIVT NK+CA++LTTH      MEE EALCQRIGIMVGGRL+CLGS+QHLK+RFG G+QLE   A  T+       Q   +     P                               ++ LR        P LE EI++ GRG+ +   ++  G +  +D+A W   E  C +                   ++AF    F GA L EKQ  K+R   P QEG  L  +FG+IE
Sbjct: 2077 IVFLDEPSTGVDPVARRHMWEVISRIVTTNKQCALVLTTHS-----MEEAEALCQRIGIMVGGRLQCLGSAQHLKSRFGSGYQLEVTAALPTSAAASAAAQSLCASAGVAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKQALR-----GSYPALESEISQDGRGSLLWQELLAEGSIQTQDVAEWALQESACRKSRVXXXXXXXXXXXXXXNAILAFIARHFAGAQLLEKQGGKLRLALPPQEGMTLGAIFGLIE 2325          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5M8_9PHAE3.160e-9467.63ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FZE8_ECTSI1.800e-9369.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZE9_ECTSI7.370e-9266.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVX0_9PHAE1.730e-8058.02ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FZA6_ECTSI5.990e-7760.76ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ect... [more]
A0A7S3XYR3_HETAK1.200e-5044.08Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7R9U8U7_9STRA2.630e-4742.74Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
K8YZT2_NANGC1.950e-4540.16Antibiotic transport system ATP-binding protein (F... [more]
A0A6V1S0H3_HETAK3.540e-4541.53Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YSC0_9STRA1.770e-4440.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11300contigS-dermatodea_contig11300:2632..3925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.0
Seed ortholog evalue2.5e-76
Seed eggNOG ortholog2880.D7FZE8
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0099120
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0059@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons5
Model size729
Cds size699
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11300.841.1prot_S-dermatodea_contig11300.841.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11300 2662..3925 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924196.2553513-UTR-S-dermatodea_contig11300:2631..26611622924196.2553513-UTR-S-dermatodea_contig11300:2631..2661Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11300 2632..2661 +
1694079084.634331-UTR-S-dermatodea_contig11300:2631..26611694079084.634331-UTR-S-dermatodea_contig11300:2631..2661Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11300 2632..2661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924196.26688-CDS-S-dermatodea_contig11300:2661..27681622924196.26688-CDS-S-dermatodea_contig11300:2661..2768Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11300 2662..2768 +
1694079084.6466887-CDS-S-dermatodea_contig11300:2661..27681694079084.6466887-CDS-S-dermatodea_contig11300:2661..2768Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11300 2662..2768 +
1622924196.2767663-CDS-S-dermatodea_contig11300:2927..30721622924196.2767663-CDS-S-dermatodea_contig11300:2927..3072Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11300 2928..3072 +
1694079084.656214-CDS-S-dermatodea_contig11300:2927..30721694079084.656214-CDS-S-dermatodea_contig11300:2927..3072Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11300 2928..3072 +
1622924196.2850037-CDS-S-dermatodea_contig11300:3172..32441622924196.2850037-CDS-S-dermatodea_contig11300:3172..3244Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11300 3173..3244 +
1694079084.665994-CDS-S-dermatodea_contig11300:3172..32441694079084.665994-CDS-S-dermatodea_contig11300:3172..3244Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11300 3173..3244 +
1622924196.2930114-CDS-S-dermatodea_contig11300:3327..35581622924196.2930114-CDS-S-dermatodea_contig11300:3327..3558Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11300 3328..3558 +
1694079084.6754718-CDS-S-dermatodea_contig11300:3327..35581694079084.6754718-CDS-S-dermatodea_contig11300:3327..3558Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11300 3328..3558 +
1622924196.3046954-CDS-S-dermatodea_contig11300:3781..39251622924196.3046954-CDS-S-dermatodea_contig11300:3781..3925Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11300 3782..3925 +
1694079084.6847577-CDS-S-dermatodea_contig11300:3781..39251694079084.6847577-CDS-S-dermatodea_contig11300:3781..3925Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11300 3782..3925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11300.841.1

>prot_S-dermatodea_contig11300.841.1 ID=prot_S-dermatodea_contig11300.841.1|Name=mRNA_S-dermatodea_contig11300.841.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=233bp
MDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIM
VGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEVLPQLFKSEGDRIPAH
FLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEIT
EHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQ
EKQNAKMRFEFPQQEGQNLAQMFGVIEVRQGAI
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mRNA from alignment at S-dermatodea_contig11300:2632..3925+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11300.841.1 ID=mRNA_S-dermatodea_contig11300.841.1|Name=mRNA_S-dermatodea_contig11300.841.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1294bp|location=Sequence derived from alignment at S-dermatodea_contig11300:2632..3925+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCGTGTTTCTCGATGAGCCGAGTACAGGAATGGACCCGATGGCGCGGCG TTTCATGTGGAACGTGATCATGCGCATTGTCACGGAGAACAAGGAGTGCG CCATGATCCTCACCACGCACAGGCATGCTACTCGTTGGTTATGGTGTGAT GTACACAGCAAAGACGCACGAGACTGAACGAGCATCGTGTAGTCGTGCTG TACGTGTTTCTCTCGCGTCGCAATGCTCCTTGTCACACTCACCCCGCCCC GTCCCAATTTGCCTGCCACGTTCTTACGATGTGTCGTCATCTTCAGCATG GAGGAGTGTGAGGCGCTTTGCCAGCGCATTGGTATCATGGTCGGAGGGCG TCTCAGATGCCTCGGTAGCTCGCAGCACCTCAAGACCCGCTTCGGCAAGG GTTTCCAGCTCGAGGCGCGCGTCACCGCCATCACGCACGAGGTATAGCCG TTAGATTACAACTGTAGATACGCTACGCGCGTGGCGGTGGAAGGGGGCAG CTAAATGGTTCGCTCTTTCAGGCGCAAGCCCGCTTCAATAGGTCTTGCCC CAACTTTTCAAGAGTGAAGGGGACCGAATACCCGCGCATTTCCTTCGACC CAGTTCGCCTTCAGTCCTCCCCCTCCATCCCAAAATCTCAACATTGCTCC TTCCCGCTTTCCTCCTTTTCGCTCTTGGCGATGCGGTGTTCAGGAGACGG ATTCCATGATGGCAACTATCGCCCTCGCCACAAGCGGGAAGGGGGAAATC AACAGCGACCGCGAAGTGCTTCGCGCCGTGCTAGCTGCCGCACAGGCACC GGAGCTGGAGGAGGAGATCACGGAGCATGGACGAGGCGCAACCATACACC ACGGGATGATGGGCCGGGGCATGGTACCGGCGAGGGACTTGGCTTCTTGG ATATGCTTGGAGAAGAAGTGCTCGCGGGTGCGTCAAAATAAGCTTGACTT TCGCGCAGCTGTGAGGTACCGCGTAATAAAGCTGGCATGTCCTACCAGTC ACCAATGGCATTGAACCGACATGAATTGGTTGCATTGCAACTGTGATAAT CAATCAAATCAATCAATCAAATCAATCATTAAAATCAATCAATGGTGCTG TTCCCAACACTCGTACTCGAACTCGTCTGTTGGGGGAATGGGACAAACAG GTGATTGCGTTTGCGCAGGAGAGTTTCCGGGGCGCCATTCTCCAGGAAAA GCAGAACGCGAAGATGCGCTTCGAGTTTCCCCAGCAGGAAGGCCAGAACC TCGCACAAATGTTCGGCGTCATCGAGGTAAGGCAGGGTGCGATA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11300:2632..3925+

>mRNA_S-dermatodea_contig11300.841.1 ID=mRNA_S-dermatodea_contig11300.841.1|Name=mRNA_S-dermatodea_contig11300.841.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at S-dermatodea_contig11300:2632..3925+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACCCGATGGCGCGGCGTTTCATGTGGAACGTGATCATGCGCATTGT
CACGGAGAACAAGGAGTGCGCCATGATCCTCACCACGCACAGGCATGCTA
CTCGTTGATGGACCCGATGGCGCGGCGTTTCATGTGGAACGTGATCATGC
GCATTGTCACGGAGAACAAGGAGTGCGCCATGATCCTCACCACGCACAGG
CATGCTACTCGTTGCATGGAGGAGTGTGAGGCGCTTTGCCAGCGCATTGG
TATCATGGTCGGAGGGCGTCTCAGATGCCTCGGTAGCTCGCAGCACCTCA
AGACCCGCTTCGGCAAGGGTTTCCAGCTCGAGGCGCGCGTCACCGCCATC
ACGCACGAGCATGGAGGAGTGTGAGGCGCTTTGCCAGCGCATTGGTATCA
TGGTCGGAGGGCGTCTCAGATGCCTCGGTAGCTCGCAGCACCTCAAGACC
CGCTTCGGCAAGGGTTTCCAGCTCGAGGCGCGCGTCACCGCCATCACGCA
CGAGGTCTTGCCCCAACTTTTCAAGAGTGAAGGGGACCGAATACCCGCGC
ATTTCCTTCGACCCAGTTCGCCTTCAGTCTTGCCCCAACTTTTCAAGAGT
GAAGGGGACCGAATACCCGCGCATTTCCTTCGACCCAGTTCGCCTTCAAC
GGATTCCATGATGGCAACTATCGCCCTCGCCACAAGCGGGAAGGGGGAAA
TCAACAGCGACCGCGAAGTGCTTCGCGCCGTGCTAGCTGCCGCACAGGCA
CCGGAGCTGGAGGAGGAGATCACGGAGCATGGACGAGGCGCAACCATACA
CCACGGGATGATGGGCCGGGGCATGGTACCGGCGAGGGACTTGGCTTCTT
GGATATGCTTGGAGAAGAAGTGCTCGCGGACGGATTCCATGATGGCAACT
ATCGCCCTCGCCACAAGCGGGAAGGGGGAAATCAACAGCGACCGCGAAGT
GCTTCGCGCCGTGCTAGCTGCCGCACAGGCACCGGAGCTGGAGGAGGAGA
TCACGGAGCATGGACGAGGCGCAACCATACACCACGGGATGATGGGCCGG
GGCATGGTACCGGCGAGGGACTTGGCTTCTTGGATATGCTTGGAGAAGAA
GTGCTCGCGGGTGATTGCGTTTGCGCAGGAGAGTTTCCGGGGCGCCATTC
TCCAGGAAAAGCAGAACGCGAAGATGCGCTTCGAGTTTCCCCAGCAGGAA
GGCCAGAACCTCGCACAAATGTTCGGCGTCATCGAGGTAAGGCAGGGTGC
GATAGTGATTGCGTTTGCGCAGGAGAGTTTCCGGGGCGCCATTCTCCAGG
AAAAGCAGAACGCGAAGATGCGCTTCGAGTTTCCCCAGCAGGAAGGCCAG
AACCTCGCACAAATGTTCGGCGTCATCGAGGTAAGGCAGGGTGCGATA
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