mRNA_S-dermatodea_contig11300.841.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: A0A6H5L5M8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M8_9PHAE) HSP 1 Score: 307 bits (787), Expect = 3.160e-94 Identity = 163/241 (67.63%), Postives = 186/241 (77.18%), Query Frame = 1
Query: 1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEVLPQLFKSEGDRIPAHFLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQEKQNAKMRFEFPQQEGQNLAQMFGVIEVRQG 723
IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTH MEECEALCQRIGIMVGGRLRCLG+SQHLKTRFGKGFQLEARV AI LP+ TD+MM +A AT+G+G + +D VLRA LAAAQAPELE E++ GRGA+I+H + +G VP RDLA+WIC+EKKCS+VIAF Q+ F GA+++EKQNAKMRFEFP Q+ Q LAQMFGV+EV G
Sbjct: 833 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHS-----MEECEALCQRIGIMVGGRLRCLGTSQHLKTRFGKGFQLEARVKAI----LPE-------------------ETDAMMTELASATNGQGTLGNDGGVLRAALAAAQAPELEAEVSPTGRGASIYHAIANQGGVPVRDLAAWICVEKKCSKVIAFMQQQFAGAVMREKQNAKMRFEFPPQKNQTLAQMFGVVEVFNG 1045
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: D7FZE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE8_ECTSI) HSP 1 Score: 310 bits (794), Expect = 1.800e-93 Identity = 165/237 (69.62%), Postives = 183/237 (77.22%), Query Frame = 1
Query: 1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEVLPQLFKSEGDRIPAHFLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQEKQNAKMRFEFPQQEGQNLAQMFGVIE 711
IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTH MEECEALCQRIGIMVGGRLRCLG+SQHLKTRFGKGFQLEARV AITHE TD+MMAT+A AT+G+G + +D VLRA LAAAQAPELE E++ GRGA+I+H + +G V RDLA+WIC+EKKCSRVIAF Q+ F GA L+EKQNAKMRFEFP Q+ Q LAQMFG IE
Sbjct: 1700 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHS-----MEECEALCQRIGIMVGGRLRCLGTSQHLKTRFGKGFQLEARVKAITHE-----------------------ETDAMMATLAHATNGQGTLTNDGGVLRAALAAAQAPELEAEVSPTGRGASIYHAIANQGGVSVRDLAAWICVEKKCSRVIAFMQQHFAGAALREKQNAKMRFEFPPQKNQTLAQMFGFIE 1908
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: D7FZE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE9_ECTSI) HSP 1 Score: 305 bits (782), Expect = 7.370e-92 Identity = 162/243 (66.67%), Postives = 188/243 (77.37%), Query Frame = 1
Query: 1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEVLPQLFKSEGDRIPAHFLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQEKQNAKMRFEFPQQEGQNLAQMFGVIEVRQGAI 729
IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTH MEECEALCQRIGIMVGGRLRCLG+SQHLKTRFGKGFQLEARV AI LP+ TD+MMA +A AT+G+G + +D VLRA LAAAQAP+LE E++ GRGA+I+H + +G VP RDLA+WIC+EKKCS+VIAF Q+ F GA+++EKQNAKMRFEFP Q+ Q LAQMFGV+E + A+
Sbjct: 1720 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHS-----MEECEALCQRIGIMVGGRLRCLGTSQHLKTRFGKGFQLEARVKAI----LPE-------------------ETDAMMAELAPATNGQGTLGNDGGVLRAALAAAQAPDLEAEVSATGRGASIYHAIANQGGVPVRDLAAWICVEKKCSKVIAFMQQQFAGAVMREKQNAKMRFEFPPQKNQTLAQMFGVVENEREAL 1934
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: A0A6H5JVX0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVX0_9PHAE) HSP 1 Score: 261 bits (667), Expect = 1.730e-80 Identity = 152/262 (58.02%), Postives = 174/262 (66.41%), Query Frame = 1
Query: 1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEV------------LPQLFKSEGD------RIPAH-------FLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQEKQNAKMRFEFPQQEGQNLAQMFGVIE 711
IVFLDEPSTGMDPMARR MWN IMRIVT+N+ CAMILTTH MEECEALCQRIGIMVGGR+RCLGSSQHLKTRFGKGFQLEARV A++ V L K G R+P + FL D+M+ATIA AT G+ + S E+ L AAQ PEL EIT GRGA ++H + V ARD A+W+CLE+ CSRVIAF + SF+GA L+EKQNAKMRFE PQQE + L MFG IE
Sbjct: 294 IVFLDEPSTGMDPMARRMMWNYIMRIVTQNRSCAMILTTHS-----MEECEALCQRIGIMVGGRMRCLGSSQHLKTRFGKGFQLEARVGAVSPTVSWSWAATTARKALSHRMKYFGIQSQQYCRLPFYNNPVLSLFLEKPQ-DIDAMLATIATATGGQASLPS--ELCGPALDAAQCPELAPEITPEGRGAMVYHALANERTVLARDFAAWLCLEQSCSRVIAFVESSFKGARLREKQNAKMRFEIPQQEDKTLGAMFGFIE 547
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: D7FZA6_ECTSI (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA6_ECTSI) HSP 1 Score: 263 bits (671), Expect = 5.990e-77 Identity = 144/237 (60.76%), Postives = 163/237 (68.78%), Query Frame = 1
Query: 1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEVLPQLFKSEGDRIPAHFLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQEKQNAKMRFEFPQQEGQNLAQMFGVIE 711
IVFLDEPSTGMDPMARR MWN IMRIVT+N+ CAMILTTH MEECEALCQRIGIMVGGR+RCLGSSQHLKTRFGKGFQLEARV A+ S D+M+ATIA AT G+ + S E+ L AAQ PE EIT GRGA ++H + V ARD A+W+CLE+ CSRVIAF + SF+GA L+EKQNAKMRFE PQQE + L MFG IE
Sbjct: 1722 IVFLDEPSTGMDPMARRMMWNYIMRIVTQNRSCAMILTTHS-----MEECEALCQRIGIMVGGRMRCLGSSQHLKTRFGKGFQLEARVGAV-----------------------SPTDIDAMLATIAPATGGQASLPS--ELCGPALDAAQCPEFAPEITAEGRGAMVYHALANERTVLARDFAAWLCLEQSCSRVIAFVESSFKGARLREKQNAKMRFEIPQQEDKTLGAMFGFIE 1928
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: A0A7S3XYR3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYR3_HETAK) HSP 1 Score: 187 bits (475), Expect = 1.200e-50 Identity = 108/245 (44.08%), Postives = 148/245 (60.41%), Query Frame = 1
Query: 1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEVLPQLFKSEGDRIPAHFLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELE--EEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQEKQNAKMRFEFPQQEGQNLAQMFGVIEVRQGAI 729
+VFLDEPSTGMDP+ARRFMW+VI +I TE ++CA+ILTTH MEECEALC RIGIMVGGRLRCLGS+Q LK+RFG GFQLE + + E L + + PA A +G ++ VLAA A + + E G GA ++H ++ RG V DL ++ E++ ++ AF ++F+GA+L+EKQ+ K+RFE+P Q G L +MFG +E R+ +
Sbjct: 1712 LVFLDEPSTGMDPVARRFMWDVITKISTERQQCAVILTTHS-----MEECEALCTRIGIMVGGRLRCLGSAQRLKSRFGLGFQLELGLRLPSEEELADGLRRVAEGAPA-------------------AAAGGAAQRLAQQDFAPVLAALGADPAQWLPKFCETGAGALLYHELLARGGVALGDLVAFHARERRAAQAEAFVADTFKGAVLREKQSGKLRFEYPPQPGLALGEMFGALEDRRAQL 1932
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: A0A7R9U8U7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8U7_9STRA) HSP 1 Score: 166 bits (421), Expect = 2.630e-47 Identity = 103/241 (42.74%), Postives = 137/241 (56.85%), Query Frame = 1
Query: 1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEVLPQLFKSEGDRIPAHFLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQEKQNAKMRFEFP--QQEGQ--NLAQMFGVIE 711
IVFLDEPSTGMDP+A+RFMW VI I T +CA+ILTTH MEECEALC RIGIMVGGR RCLGS+Q LKT+FG G+QLEA + ++P+ + + +A A G GE + R+ L A A L + +T G GA++ + G + A D A+W+ LEK+ + +E++ G L+E Q KMRFE P Q +G +LA +F V+E
Sbjct: 17 IVFLDEPSTGMDPLAKRFMWEVISAIATRQGKCAVILTTHS-----MEECEALCSRIGIMVGGRFRCLGSAQRLKTKFGLGYQLEASL-----------------KLPS----------EEEVTALASAMGGAGE-HITRDNLEEKFALAGGARLAKNVTPEGSGASVDFDLTHFGFIRAGDAATWLALEKEKQALTDALEETYPGVTLREAQGRKMRFEIPGSQADGAKLHLADVFDVLE 224
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: K8YZT2_NANGC (Antibiotic transport system ATP-binding protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YZT2_NANGC) HSP 1 Score: 169 bits (429), Expect = 1.950e-45 Identity = 100/249 (40.16%), Postives = 140/249 (56.22%), Query Frame = 1
Query: 1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEVLPQLFKSE-GDRIPAHFLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQEKQNAKMRFEFPQQE-----GQNLAQMFGVIEVRQGAI 729
IV LDEPS+GMD +ARRFMW VI I T+ EC +ILTTH MEECEALC RIGIMVGGR RC+GS+QHLK+R+G G+QLE V E++P + GD R P+ D+ +A + A + L LAA E I+ G GA + + G + R+ A W LE + ++ F +++ A+L+E+Q K+RFE P ++ + L++MFG+IE +G +
Sbjct: 302 IVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHS-----MEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGK--RMVLPADDTFLARLEGAAARLSTERFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSIGVREFAGWCSLEDRMESILRFIMDNYPDAVLRERQGTKVRFEIPSKDTNTGAARKLSEMFGLIEDNKGRL 543
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: A0A6V1S0H3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S0H3_HETAK) HSP 1 Score: 162 bits (411), Expect = 3.540e-45 Identity = 103/248 (41.53%), Postives = 138/248 (55.65%), Query Frame = 1
Query: 1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVTAITHEVLP---QLFKSEGDRIPAHFLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSRVIAFAQESFRGAILQEKQNAKMRFEFPQQEGQN--LAQMFGVIEVRQGAI 729
++FLDEPSTGMDP+ARRFMW VI RI TE ++ A+ILTTH MEECEALC RIGIMVGG+LRCLGS+QHLK+RFG G+QLE T E L + ++EG ++ L AL G GE R E G AT+ H + +G V A +LA+W L+ + + A+ +F GA+L+E+Q + RFE P + G +A MF +E ++ A+
Sbjct: 54 LIFLDEPSTGMDPVARRFMWEVITRISTERQQAAIILTTHS-----MEECEALCTRIGIMVGGQLRCLGSAQHLKSRFGLGYQLELGARTATAEELATATEKLQAEGGQLSEGQLG------------AALQRLGYGEDYDWR----------------TEFLPSGSAATLGHELAVKGAVSAEELAAWALLDGRVRALHAWVGRAFEGAVLRERQAGRARFEVPHRAGGRGGMAGMFAALEGQREAL 268
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Match: A0A835YSC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSC0_9STRA) HSP 1 Score: 169 bits (429), Expect = 1.770e-44 Identity = 104/259 (40.15%), Postives = 132/259 (50.97%), Query Frame = 1
Query: 1 IVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLE---ARVTAITHEVLPQLFKSEGDRIPAHFLRPSSPSTDSMMATIALATSGKGEINSDREVLRAVLAAAQAPELEEEITEHGRGATIHHGMMGRGMVPARDLASWICLEKKCSR-------------------VIAFAQESFRGAILQEKQNAKMRFEFPQQEGQNLAQMFGVIE 711
IVFLDEPSTG+DP+ARR MW VI RIVT NK+CA++LTTH MEE EALCQRIGIMVGGRL+CLGS+QHLK+RFG G+QLE A T+ Q + P ++ LR P LE EI++ GRG+ + ++ G + +D+A W E C + ++AF F GA L EKQ K+R P QEG L +FG+IE
Sbjct: 2077 IVFLDEPSTGVDPVARRHMWEVISRIVTTNKQCALVLTTHS-----MEEAEALCQRIGIMVGGRLQCLGSAQHLKSRFGSGYQLEVTAALPTSAAASAAAQSLCASAGVAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKQALR-----GSYPALESEISQDGRGSLLWQELLAEGSIQTQDVAEWALQESACRKSRVXXXXXXXXXXXXXXNAILAFIARHFAGAQLLEKQGGKLRLALPPQEGMTLGAIFGLIE 2325 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11300.841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11300.841.1 >prot_S-dermatodea_contig11300.841.1 ID=prot_S-dermatodea_contig11300.841.1|Name=mRNA_S-dermatodea_contig11300.841.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=233bp MDPMARRFMWNVIMRIVTENKECAMILTTHRHATRCMEECEALCQRIGIMback to top mRNA from alignment at S-dermatodea_contig11300:2632..3925+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11300.841.1 ID=mRNA_S-dermatodea_contig11300.841.1|Name=mRNA_S-dermatodea_contig11300.841.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1294bp|location=Sequence derived from alignment at S-dermatodea_contig11300:2632..3925+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11300:2632..3925+ >mRNA_S-dermatodea_contig11300.841.1 ID=mRNA_S-dermatodea_contig11300.841.1|Name=mRNA_S-dermatodea_contig11300.841.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at S-dermatodea_contig11300:2632..3925+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |