mRNA_S-dermatodea_contig1130.838.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1130.838.1
Unique NamemRNA_S-dermatodea_contig1130.838.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1130.838.1 vs. uniprot
Match: D7G2S2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2S2_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 1.040e-44
Identity = 75/102 (73.53%), Postives = 89/102 (87.25%), Query Frame = 1 
Query:   52 MKFLGFLVVCLTAVNGFVAPA-PRVSSIVRPATSSTAMRMGLKSDIQKAATTASVAILTAAPAFATEGTGEPLGIEETKGLVLPLFFLVSVNLLFNNWAKDQ 354
            MKFLGF VVCLTAV+GFVAP  PR+S+ VRP+T++T MRMGLK D+QK A  ASVA+LTAAPA ATEGTGEPLG E ++ +++PLFFLVS+NLLFNNWAKDQ
Sbjct:    1 MKFLGFFVVCLTAVSGFVAPTGPRLSAAVRPSTAATPMRMGLKEDVQKVANAASVAVLTAAPALATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQ 102
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BLAST of mRNA_S-dermatodea_contig1130.838.1 vs. uniprot
Match: A0A835Z064_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z064_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.100e-7
Identity = 35/91 (38.46%), Postives = 48/91 (52.75%), Query Frame = 1 
Query:   82 LTAVNGFVAPAPRVSSIVRPATSSTAMRMGLKSDIQKAATTASVAILTAAPAFATEGTGEPLGIEETKGLVLPLFFLVSVNLLFNNWAKDQ 354
            + A + FVAPA   +        S A + G       A  T S A+L+AAPA ATEGT E LGI+      +PL  + ++NL+F  WA+ Q
Sbjct:   12 VAAASAFVAPAAPTAIRATTTVMSAAPKAG-------AIATVSAALLSAAPALATEGTSEALGIDNPLAFWVPLTVIFAINLIFFQWARTQ 95
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BLAST of mRNA_S-dermatodea_contig1130.838.1 vs. uniprot
Match: A0A4D9CXZ8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXZ8_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.220e-5
Identity = 32/99 (32.32%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:   61 LGFLVVCLTAVNGFVAPAP-RVSSIVRPATSSTAMRMGLKSDIQKAATTASVAILTAAPAFATEGTGEPLGIEETKGLVLPLFFLVSVNLLFNNWAKDQ 354
            L  L+VCL AV GF+  AP R   +++ + +   +   +K+   K A      ++ ++P FATEGTGE LG+++ + L L      +   LF++W+  Q
Sbjct:    7 LAVLIVCLQAVMGFMPTAPLRTRQVMKMSATDNKVTEVVKTG--KTALAGLTPLILSSPVFATEGTGEALGVDDPRILPLVASVGAAFAFLFSSWSNKQ 103
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1130.838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2S2_ECTSI1.040e-4473.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z064_9STRA1.100e-738.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CXZ8_9STRA2.220e-532.32Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1130contigS-dermatodea_contig1130:15920..17055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_003300.1
Exons2
Model size356
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924196.0338385-CDS-S-dermatodea_contig1130:15919..160121622924196.0338385-CDS-S-dermatodea_contig1130:15919..16012Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1130 15920..16012 -
1694079084.4808784-CDS-S-dermatodea_contig1130:15919..160121694079084.4808784-CDS-S-dermatodea_contig1130:15919..16012Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1130 15920..16012 -
1622924196.0439548-CDS-S-dermatodea_contig1130:16794..170551622924196.0439548-CDS-S-dermatodea_contig1130:16794..17055Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1130 16795..17055 -
1694079084.490181-CDS-S-dermatodea_contig1130:16794..170551694079084.490181-CDS-S-dermatodea_contig1130:16794..17055Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1130 16795..17055 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1130.838.1prot_S-dermatodea_contig1130.838.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1130 15920..17055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1130.838.1

>prot_S-dermatodea_contig1130.838.1 ID=prot_S-dermatodea_contig1130.838.1|Name=mRNA_S-dermatodea_contig1130.838.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=118bp
SYAASRHQHHKHRTFANMKFLGFLVVCLTAVNGFVAPAPRVSSIVRPATS
STAMRMGLKSDIQKAATTASVAILTAAPAFATEGTGEPLGIEETKGLVLP
LFFLVSVNLLFNNWAKDQ
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mRNA from alignment at S-dermatodea_contig1130:15920..17055-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1130.838.1 ID=mRNA_S-dermatodea_contig1130.838.1|Name=mRNA_S-dermatodea_contig1130.838.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1136bp|location=Sequence derived from alignment at S-dermatodea_contig1130:15920..17055- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTTACGCTGCATCTCGCCACCAGCACCACAAGCACCGTACGTTCGCGAA
CATGAAGTTCCTCGGCTTTCTCGTAGTGTGCCTCACGGCGGTGAACGGAT
TCGTTGCGCCCGCACCTCGCGTTTCGTCCATCGTGCGCCCGGCGACCTCC
TCCACAGCCATGCGCATGGGCCTCAAGAGCGACATCCAGAAGGCCGCTAC
CACCGCCTCGGTCGCGATTCTCACAGCGGCGCCTGCCTTTGCCACGGAGG
GAACCGGCGAGGTGCGTTAGTTGGAGATCGTGGCGAAACGGAGGGGAGAA
AGGGGGTTCGAGTTCTGGAGGAATTCATGTTTGGCGTGTTTTTGGGGTCA
TGAGTGAGTCATGCTGCTTGAAGCTCCGCGGCGATCGCCCAGCGCGTGCG
TGCGACTGCATGGGATGGGGTGAACACATATCGCGACGAGTCACATCGTG
GTAGGCCTTCAAGCCTTTACGGTGGCGCTGCTATGGTATACGCGAGCTAG
TCGCGCGCCTTATCTGCAGCATAGTACATGAACACGTAGCTGCGATCGCG
GAGTGTGACCGAACTACATGTAAGAGTGCTCGGAATGTTTTGCAGTCATT
GGTGGGTTCGGGCCTTCGAAGGCTGCCGCCACCTCTCCATGACGAGTATT
ATACTACAAGTAGTATTGAGTCATGTTATACCTTATACTGTAATATCATA
CTTGTGCATGATCACCTGTGTCATCATGACATATATACCTGTATGATATG
CTGCAGTCAGTAGCCAAGTATTTATGTTATATCGCTCACGACCCAAAGGA
CGCACGCGTATTTGGAACAGCCAGCTTCTCATGCATGTGGAAAATACTGG
AGGAGTGTGGGGCCTCTGCCAGCTCATTTGCAGCAGTTGAACTCGTTGTC
GATGTGTGTGTTGTTTCATGTGTGAAACGTAGCGCTTGCTGTAGTTTGCA
CTCTCTTTCGCTATTCGCTGAGTCTGTCTCTCTGCTCATTCTGCTGTCGT
CCCATGCATGTTTCTTGTTTCAATTTTGCTTCGGCCACCACAGCCGTTGG
GCATCGAAGAGACGAAGGGCCTCGTTCTGCCTCTGTTTTTCCTCGTCAGC
GTTAACCTGCTGTTCAACAACTGGGCGAAGGACCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1130:15920..17055-

>mRNA_S-dermatodea_contig1130.838.1 ID=mRNA_S-dermatodea_contig1130.838.1|Name=mRNA_S-dermatodea_contig1130.838.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at S-dermatodea_contig1130:15920..17055- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTTACGCTGCATCTCGCCACCAGCACCACAAGCACCGTACGTTCGCGAA
CATGAAGTTCCTCGGCTTTCTCGTAGTGTGCCTCACGGCGGTGAACGGAT
TCGTTGCGCCCGCACCTCGCGTTTCGTCCATCGTGCGCCCGGCGACCTCC
TCCACAGCCATGCGCATGGGCCTCAAGAGCGACATCCAGAAGGCCGCTAC
CACCGCCTCGGTCGCGATTCTCACAGCGGCGCCTGCCTTTGCCACGGAGG
GAACCGGCGAGTCTTACGCTGCATCTCGCCACCAGCACCACAAGCACCGT
ACGTTCGCGAACATGAAGTTCCTCGGCTTTCTCGTAGTGTGCCTCACGGC
GGTGAACGGATTCGTTGCGCCCGCACCTCGCGTTTCGTCCATCGTGCGCC
CGGCGACCTCCTCCACAGCCATGCGCATGGGCCTCAAGAGCGACATCCAG
AAGGCCGCTACCACCGCCTCGGTCGCGATTCTCACAGCGGCGCCTGCCTT
TGCCACGGAGGGAACCGGCGAGCCGTTGGGCATCGAAGAGACGAAGGGCC
TCGTTCTGCCTCTGTTTTTCCTCGTCAGCGTTAACCTGCTGTTCAACAAC
TGGGCGAAGGACCAGCCGTTGGGCATCGAAGAGACGAAGGGCCTCGTTCT
GCCTCTGTTTTTCCTCGTCAGCGTTAACCTGCTGTTCAACAACTGGGCGA
AGGACCAG
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