mRNA_S-dermatodea_contig113.834.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig113.834.1
Unique NamemRNA_S-dermatodea_contig113.834.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig113.834.1 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 2.270e-39
Identity = 64/124 (51.61%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    1 MCCWTKND-GDGMEDNTDVCRV-NDDIRFPGDSEGDVNCHGFVWAEGADLNSFILPLYHYVRTYDRNRR--GYHGHLEHAPECECIEMMPEVSRADCTTFSSQGLVSCEKNDLRTHYENEMDSP 360
            MCC+T +D G+G+  NTDVC V ++ +  PGDSEG V CHGF W EGAD+N+ ILPLYHYV+   R     GY+G++E APEC CIE MP+VS A+C+ FS  G+  C +  L + Y   +D+P
Sbjct:   44 MCCYTNHDSGEGVTANTDVCSVPSEGLEMPGDSEGPVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLDAP 167          
BLAST of mRNA_S-dermatodea_contig113.834.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.600e-38
Identity = 71/128 (55.47%), Postives = 88/128 (68.75%), Query Frame = 1
Query:    1 MCCWTKNDGDGMEDNTDVCRVND------DIRFPGDSEGDVNCHGFVWAEGADLNSFILPLYHYVRTYD-RNRRGYHGHLEHAPECECIEMMPEVSRADCTTFSSQG-----LVSCEKNDLRTHYENE 348
            MCCWT+NDG+GM DNTDVCRV D       + FPGDSEG+V+CHGFVW E A  + +I  L  +V+ +D R+RRGY+G++E AP C CIE MP VS ADCTT+ +         +C KNDLRT YE E
Sbjct:  328 MCCWTENDGEGMADNTDVCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPEDA-TDKYIHLLSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLRTRYEAE 454          
BLAST of mRNA_S-dermatodea_contig113.834.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 2.100e-36
Identity = 68/128 (53.12%), Postives = 86/128 (67.19%), Query Frame = 1
Query:    1 MCCWTKNDGDGMEDNTDVCRVND------DIRFPGDSEGDVNCHGFVWAEGADLNSFILPLYHYVRTYD-RNRRGYHGHLEHAPECECIEMMPEVSRADCTTFSSQG-----LVSCEKNDLRTHYENE 348
            MCCWT+NDG GM DNTDVCRV D         +PG+SEG+V+CHGFVW E A  + +I  L  +V+ +D R+RRGY G++E AP C CIE MP+VS ADCTT+ ++        +C  NDLRT YE E
Sbjct:  342 MCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDA-TDKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEE 468          
BLAST of mRNA_S-dermatodea_contig113.834.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 2.630e-36
Identity = 69/128 (53.91%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    1 MCCWTKNDGDGMEDNTDVCRVND------DIRFPGDSEGDVNCHGFVWAEGADLNSFILPLYHYVRTYD-RNRRGYHGHLEHAPECECIEMMPEVSRADCTTFSSQG-----LVSCEKNDLRTHYENE 348
            MCCWT+NDG GM DNTDVCRV D         +PG+SEG+V+CHGFVW E A  + +I  L  +V+ +D R+RRGY G++E AP C CIE MP+VS ADCTT+ ++        +C KNDLRT YE E
Sbjct:  299 MCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDA-TDKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLRTRYEEE 425          
BLAST of mRNA_S-dermatodea_contig113.834.1 vs. uniprot
Match: A0A6H5JT81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT81_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 4.300e-36
Identity = 64/128 (50.00%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    1 MCCWTKNDGD-GMEDNTDVCRV------NDDIRFPGDSEGDVNCHGFVWAEGADLNSFILPLYHYVRTYDR-NRRGYHGHLEHAPECECIEMMPEVSRADCTTFSSQGLVSCEKNDLRTHYENEMDSP 360
            MCCWT +DG  GM  N DVCRV       D +  P D EG V CHGF WA+GAD++S ILPLYHYV   +R +  GY+G++E  P C CIE MP VS A C+ F  +G+  C  N LR+ Y+ ++D P
Sbjct:   20 MCCWTGHDGSKGMYGNADVCRVLNYPEEGDVLELPRDDEGPVYCHGFAWADGADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYKLDEP 147          
BLAST of mRNA_S-dermatodea_contig113.834.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 5.800e-36
Identity = 65/128 (50.78%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 MCCWTKNDG-DGMEDNTDVCRVND------DIRFPGDSEGDVNCHGFVWAEGADLNSFILPLYHYVRTYDRNRRG-YHGHLEHAPECECIEMMPEVSRADCTTFSSQGLVSCEKNDLRTHYENEMDSP 360
            MCCWT NDG DGM  NTDVCRV D       + FP DSEG V CHGF WA+GAD+N+ ILPLYH V    R   G Y+G++E AP+C C+E MP VS ++C+ F   G+  C ++ L ++Y + +D P
Sbjct:  118 MCCWTGNDGPDGMTSNTDVCRVWDYPEEGNSLEFPRDSEGSVYCHGFGWADGADVNTNILPLYHSVINTGRTEEGGYYGNVEGAPQCGCLEEMPVVSFSECSRFDGDGITDCGEHGLYSNYVSRIDEP 245          
BLAST of mRNA_S-dermatodea_contig113.834.1 vs. uniprot
Match: A0A6H5L9G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G6_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 4.890e-33
Identity = 58/123 (47.15%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 MCCWTKND-GDGMEDNTDVCRVNDDIRFPGDSEGDVNCHGFVWAEGADLNSFILPLYHYVRTYDRNRR--GYHGHLEHAPECECIEMMPEVSRADCTTFSSQGLVSCEKNDLRTHYENEMDSP 360
            MCC+T +D G+G+  NTDVC V         +EG V CHGF W +GAD+N+ ILPLYHYV+   R     GY+G +E APEC CIE MP+VS A+C+ F   G+V C +  L + Y   + +P
Sbjct:   51 MCCFTNHDSGEGVTANTDVCSVP--------NEGSVYCHGFAWPDGADVNNHILPLYHYVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFDIDGIVGCGEGGLYSQYNGRLGAP 165          
BLAST of mRNA_S-dermatodea_contig113.834.1 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.380e-30
Identity = 61/133 (45.86%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    1 MCCWTKNDG-DGMEDNTDVCRV------NDDIRFPGDSEGDVNCHGFVWAEGADLNSFILPLYHYVRTYDRNRR-GYH-----GHLEHAPECECIEMMPEVSRADCTTFSSQGLVSCEKNDLRTHYENEMDSP 360
            MCCWT NDG DGM  N+DVCRV       D    P +SEG V CHGF WAEGAD+++ ILPLYHYV+   R    G++       +E  PEC CIE +P VS ++C+ +S +G+  C  N L + Y   +  P
Sbjct:   52 MCCWTGNDGADGMTANSDVCRVLDYPEEGDSFEMPRESEGFVCCHGFAWAEGADVDTHILPLYHYVKNVGRTEEAGFYEMKLPDSVEGTPECGCIEEIPSVSCSECSRYSWEGIAGCGNNGLLSQYRGCLGEP 184          
BLAST of mRNA_S-dermatodea_contig113.834.1 vs. uniprot
Match: D8LHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS4_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 3.540e-27
Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 1
Query:    1 MCCWTKNDGDG-MEDNTDVCRVNDDIRFPGDSEGDVNCHGFVWAEGADLNSFILPLYHYVRTYDRNRRGYHGHLEHAPECECIEMMPEVSRADCTTFSSQGL-----VSCEKNDLRTHYENEMDSPG 363
            MCCW+   G+  + DNTDV R      FPG+SEGDV+CHG VW EG+     I         +    +GY GH+  AP C+C+E MPEVSR+DC+ +    L     ++C KNDLR  +    + PG
Sbjct:    1 MCCWSSRVGEEPVSDNTDVYRYGS-TEFPGESEGDVHCHGLVWPEGSSDEYIIYLALDVAYNHHVEEKGYFGHIPGAPVCDCLERMPEVSRSDCSQYRPAHLKGSDFMACPKNDLRPIWRPIHNGPG 126          
BLAST of mRNA_S-dermatodea_contig113.834.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 6.940e-27
Identity = 54/121 (44.63%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    1 MCCWTKNDGDGMEDNTDVCRVNDDIRFPGDSEGDVNCHGFVWAEGA--DLNSFILPLYHYVRTYDRNRRGYHGHLEHAPECECIEMMPEVSRADCTTFSSQGL-----VSCEKNDLRTHYE 342
            MCCW   +G  ++DNTDVC    +  FPGDSEG V+CHGFVW E A  D   ++     ++   D   + Y G++  AP C C+E MPEVSRADCT +    L     ++C KNDLR  Y+
Sbjct:   65 MCCWDGRNGLAVKDNTDVCSYRGE-EFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFINHVDE--KAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYK 182          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig113.834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FT53_ECTSI2.270e-3951.61Imm downregulated 17 n=1 Tax=Ectocarpus siliculosu... [more]
D7FT55_ECTSI1.600e-3855.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2N0_ECTSI2.100e-3653.13Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7G2N2_ECTSI2.630e-3653.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT81_9PHAE4.300e-3650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT54_ECTSI5.800e-3650.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L9G6_9PHAE4.890e-3347.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L319_9PHAE1.380e-3045.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHS4_ECTSI3.540e-2741.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8D2_ECTSI6.940e-2744.63Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig113contigS-dermatodea_contig113:10457..11198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue9.8e-32
Seed eggNOG ortholog2880.D7FT55
EggNOG OGs2E0FN@1,2S7W7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924195.824305-CDS-S-dermatodea_contig113:10456..106711622924195.824305-CDS-S-dermatodea_contig113:10456..10671Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig113 10457..10671 +
1694079084.327539-CDS-S-dermatodea_contig113:10456..106711694079084.327539-CDS-S-dermatodea_contig113:10456..10671Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig113 10457..10671 +
1622924195.8339863-CDS-S-dermatodea_contig113:11050..111981622924195.8339863-CDS-S-dermatodea_contig113:11050..11198Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig113 11051..11198 +
1694079084.340054-CDS-S-dermatodea_contig113:11050..111981694079084.340054-CDS-S-dermatodea_contig113:11050..11198Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig113 11051..11198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig113.834.1prot_S-dermatodea_contig113.834.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig113 10457..11198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig113.834.1

>prot_S-dermatodea_contig113.834.1 ID=prot_S-dermatodea_contig113.834.1|Name=mRNA_S-dermatodea_contig113.834.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
MCCWTKNDGDGMEDNTDVCRVNDDIRFPGDSEGDVNCHGFVWAEGADLNS
FILPLYHYVRTYDRNRRGYHGHLEHAPECECIEMMPEVSRADCTTFSSQG
LVSCEKNDLRTHYENEMDSPG
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mRNA from alignment at S-dermatodea_contig113:10457..11198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig113.834.1 ID=mRNA_S-dermatodea_contig113.834.1|Name=mRNA_S-dermatodea_contig113.834.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=742bp|location=Sequence derived from alignment at S-dermatodea_contig113:10457..11198+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGCTGCTGGACCAAGAACGATGGAGATGGTATGGAGGATAACACCGA CGTCTGCCGTGTCAACGATGACATCAGGTTCCCGGGGGACAGCGAGGGCG ACGTCAACTGTCACGGATTCGTCTGGGCCGAGGGTGCCGACCTCAACTCT TTCATTTTACCCCTGTACCACTACGTGCGGACCTACGATAGAAACCGGAG GGGCTACCACGGACAGTGAGTTACTGTGTACATGTCGTAGGGATGTTGAG GTCCCTCCTGTAAAGCTTCACACAAGCACGTGCGAACGGCAGATACGTTT AGCACCAGTTTAGTTCATCTAAGGGAAAGAGTAACCTACCCCGCAGCAGG TAGTTTTCATTAGGTAGGTATCAGTGGAAAATGCAAAAATTCAGTAACCT GCAACGAGTGTTAGGCTTGGGAGCCCCACGCACAGTCTACACTCTTACAG TTCACTGTGGGTTCCTCGATGCTATGGAAGTTGCATGGTGATGTTTGTTG TGACACAAGAGCGCACGATAGTACAATTCTAGAAGAGGTACTGAGCGCCT CAAATATAACCTTCCCCATGACCTACCCGACCGTCCGATTGCAGCCTGGA GCACGCTCCCGAGTGCGAATGTATCGAGATGATGCCGGAGGTGAGCCGCG CCGACTGCACTACCTTCTCGAGTCAAGGGCTTGTGTCTTGCGAGAAAAAC GACCTACGAACCCACTACGAGAACGAGATGGACAGCCCCGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig113:10457..11198+

>mRNA_S-dermatodea_contig113.834.1 ID=mRNA_S-dermatodea_contig113.834.1|Name=mRNA_S-dermatodea_contig113.834.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig113:10457..11198+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGCTGCTGGACCAAGAACGATGGAGATGGTATGGAGGATAACACCGA
CGTCTGCCGTGTCAACGATGACATCAGGTTCCCGGGGGACAGCGAGGGCG
ACGTCAACTGTCACGGATTCGTCTGGGCCGAGGGTGCCGACCTCAACTCT
TTCATTTTACCCCTGTACCACTACGTGCGGACCTACGATAGAAACCGGAG
GGGCTACCACGGACAATGTGCTGCTGGACCAAGAACGATGGAGATGGTAT
GGAGGATAACACCGACGTCTGCCGTGTCAACGATGACATCAGGTTCCCGG
GGGACAGCGAGGGCGACGTCAACTGTCACGGATTCGTCTGGGCCGAGGGT
GCCGACCTCAACTCTTTCATTTTACCCCTGTACCACTACGTGCGGACCTA
CGATAGAAACCGGAGGGGCTACCACGGACACCTGGAGCACGCTCCCGAGT
GCGAATGTATCGAGATGATGCCGGAGGTGAGCCGCGCCGACTGCACTACC
TTCTCGAGTCAAGGGCTTGTGTCTTGCGAGAAAAACGACCTACGAACCCA
CTACGAGAACGAGATGGACAGCCCCGGCCCTGGAGCACGCTCCCGAGTGC
GAATGTATCGAGATGATGCCGGAGGTGAGCCGCGCCGACTGCACTACCTT
CTCGAGTCAAGGGCTTGTGTCTTGCGAGAAAAACGACCTACGAACCCACT
ACGAGAACGAGATGGACAGCCCCGGC
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