mRNA_S-dermatodea_contig11299.833.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11299.833.1
Unique NamemRNA_S-dermatodea_contig11299.833.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11299.833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11299contigS-dermatodea_contig11299:6994..7660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size669
Cds size408
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924195.7314289-UTR-S-dermatodea_contig11299:6993..72521622924195.7314289-UTR-S-dermatodea_contig11299:6993..7252Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11299 6994..7252 +
1694079084.3002343-UTR-S-dermatodea_contig11299:6993..72521694079084.3002343-UTR-S-dermatodea_contig11299:6993..7252Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11299 6994..7252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924195.742596-CDS-S-dermatodea_contig11299:7252..76601622924195.742596-CDS-S-dermatodea_contig11299:7252..7660Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11299 7253..7660 +
1694079084.3089526-CDS-S-dermatodea_contig11299:7252..76601694079084.3089526-CDS-S-dermatodea_contig11299:7252..7660Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11299 7253..7660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11299.833.1prot_S-dermatodea_contig11299.833.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11299 7253..7660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11299.833.1

>prot_S-dermatodea_contig11299.833.1 ID=prot_S-dermatodea_contig11299.833.1|Name=mRNA_S-dermatodea_contig11299.833.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp
MRACETAPFRLQVPARETPLFGQRLAPHHYIITAHDMASLMVIMLSYASS
VAAWLCAFRRTVRRQKKQKPCIKLFKKTIVLGRKKTNSALLQTHAPQNST
KYLAHPIYYIIVTTARPVVELVTNSPVSGGPGFESR
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mRNA from alignment at S-dermatodea_contig11299:6994..7660+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11299.833.1 ID=mRNA_S-dermatodea_contig11299.833.1|Name=mRNA_S-dermatodea_contig11299.833.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=667bp|location=Sequence derived from alignment at S-dermatodea_contig11299:6994..7660+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTATAATACTGTATTGTATTATGTATTGTAGTACACCCAAGAAGCGAGA
AGCGTCAATATCTTCCCCCTGTCCGGACGTTTGTCCATCTTCAACGCTTG
CCGGAACCGAGGAAGAAACCAATATAAGGTTAACGTTACAAATTGCACGT
ACTCTACTATAGTAATTTTCCCTGAAAACGATGCGTGCCGACTGCCAGCC
CGGCTCACGGCGGCTATCTTGTCAGAACGCCTATTTTCCATGATCGCCTG
CTGTCTGCGATGCGTGCATGCGAAACCGCACCATTTCGACTTCAAGTACC
GGCGCGCGAAACGCCTCTTTTCGGACAACGACTCGCACCACATCATTACA
TCATCACAGCACATGACATGGCGTCACTCATGGTAATAATGCTGTCCTAT
GCATCGTCAGTGGCTGCTTGGCTATGCGCGTTCCGCAGAACGGTGCGGCG
TCAGAAGAAGCAGAAACCTTGTATCAAATTGTTTAAAAAAACAATTGTGC
TTGGTCGTAAAAAAACGAACTCTGCATTGCTACAGACACACGCACCTCAA
AACAGCACCAAATACTTGGCGCACCCCATTTATTATATTATAGTAACTAC
CGCGCGCCCCGTGGTTGAACTGGTGACCAACAGCCCAGTAAGCGGAGGAC
CGGGGTTCGAATCCCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11299:6994..7660+

>mRNA_S-dermatodea_contig11299.833.1 ID=mRNA_S-dermatodea_contig11299.833.1|Name=mRNA_S-dermatodea_contig11299.833.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig11299:6994..7660+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGTGCATGCGAAACCGCACCATTTCGACTTCAAGTACCGGCGCGCGA
AACGCCTCTTTTCGGACAACGACTCGCACCACATCATTACATCATCACAG
CACATGACATGGCGTCACTCATGGTAATAATGCTGTCCTATGCATCGTCA
GTGGCTGCTTGGCTATGCGCGTTCCGCAGAACGGTGCGGCGTCAGAAGAA
GCAGAAACCTTGTATCAAATTGTTTAAAAAAACAATTGTGCTTGGTCGTA
AAAAAACGAACTCTGCATTGCTACAGACACACGCACCTCAAAACAGCACC
AAATACTTGGCGCACCCCATTTATTATATTATAGTAACTACCGCGCGCCC
CGTGGTTGAACTGGTGACCAACAGCCCAGTAAGCGGAGGACCGGGGTTCG
AATCCCGGATGCGTGCATGCGAAACCGCACCATTTCGACTTCAAGTACCG
GCGCGCGAAACGCCTCTTTTCGGACAACGACTCGCACCACATCATTACAT
CATCACAGCACATGACATGGCGTCACTCATGGTAATAATGCTGTCCTATG
CATCGTCAGTGGCTGCTTGGCTATGCGCGTTCCGCAGAACGGTGCGGCGT
CAGAAGAAGCAGAAACCTTGTATCAAATTGTTTAAAAAAACAATTGTGCT
TGGTCGTAAAAAAACGAACTCTGCATTGCTACAGACACACGCACCTCAAA
ACAGCACCAAATACTTGGCGCACCCCATTTATTATATTATAGTAACTACC
GCGCGCCCCGTGGTTGAACTGGTGACCAACAGCCCAGTAAGCGGAGGACC
GGGGTTCGAATCCCGG
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