mRNA_S-dermatodea_contig11294.831.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-dermatodea_contig11294.831.1
Unique Name	mRNA_S-dermatodea_contig11294.831.1
Type	mRNA
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)

Homology

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BLAST of mRNA_S-dermatodea_contig11294.831.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.430e-34
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 1

Query:    4 REQLPLALCWAITRHKSQGQTVDKAVTDLGKSEATAGLTFVCLSRAKRLVDLLVEPMPFDRLSKFGEKPTLKLRLEEEVRL 246
            R QLPL LCWAIT HKSQGQT+ KAV DLG  EA  GLTFVCLSRAKRLVDL+VEPM FDR+   G  PT+K RL+EEVRL
Sbjct:   15 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 95

[Close]

BLAST of mRNA_S-dermatodea_contig11294.831.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 8.600e-34
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 1

Query:    4 REQLPLALCWAITRHKSQGQTVDKAVTDLGKSEATAGLTFVCLSRAKRLVDLLVEPMPFDRLSKFGEKPTLKLRLEEEVRL 246
            R QLPL LCWAIT HKSQGQT+ KAV DLG  EA  GLTFVCLSRAKRLVDL+VEPM FDR+   G  PT+K RL+EEVRL
Sbjct:   13 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 93

[Close]

BLAST of mRNA_S-dermatodea_contig11294.831.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 8.840e-34
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 1

Query:    4 REQLPLALCWAITRHKSQGQTVDKAVTDLGKSEATAGLTFVCLSRAKRLVDLLVEPMPFDRLSKFGEKPTLKLRLEEEVRL 246
            R QLPL LCWAIT HKSQGQT+ KAV DLG  EA  GLTFVCLSRAKRLVDL+VEPM FDR+   G  PT+K RL+EEVRL
Sbjct:   79 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 159

[Close]

BLAST of mRNA_S-dermatodea_contig11294.831.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.290e-32
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 1

Query:    4 REQLPLALCWAITRHKSQGQTVDKAVTDLGKSEATAGLTFVCLSRAKRLVDLLVEPMPFDRLSKFGEKPTLKLRLEEEVRL 246
            R QLPL LCWAIT HKSQGQT+ KAV DLG  EA  GLTFVCLSRAKRLVDL+VEPM FDR+   G  PT+K RL+EEVRL
Sbjct:  186 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 266

[Close]

BLAST of mRNA_S-dermatodea_contig11294.831.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.600e-32
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 1

Query:    4 REQLPLALCWAITRHKSQGQTVDKAVTDLGKSEATAGLTFVCLSRAKRLVDLLVEPMPFDRLSKFGEKPTLKLRLEEEVRL 246
            R QLPL LCWAIT HKSQGQT+ KAV DLG  EA  GLTFVCLSRAKRLVDL+VEPM FDR+   G  PT+K RL+EEVRL
Sbjct:   13 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 93

[Close]

BLAST of mRNA_S-dermatodea_contig11294.831.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.500e-32
Identity = 57/78 (73.08%), Postives = 62/78 (79.49%), Query Frame = 1

Query:    4 REQLPLALCWAITRHKSQGQTVDKAVTDLGKSEATAGLTFVCLSRAKRLVDLLVEPMPFDRLSKFGEKPTLKLRLEEE 237
            R QLPL LCWAIT HKSQGQT+ KAV DLG  EA  GLTFVCLSRAKRLVDL+VEPM FDR+   G  PT+K RL+EE
Sbjct:   13 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 90

[Close]

BLAST of mRNA_S-dermatodea_contig11294.831.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 8.180e-32
Identity = 59/81 (72.84%), Postives = 64/81 (79.01%), Query Frame = 1

Query:    4 REQLPLALCWAITRHKSQGQTVDKAVTDLGKSEATAGLTFVCLSRAKRLVDLLVEPMPFDRLSKFGEKPTLKLRLEEEVRL 246
            R QLPL LCWAIT HKSQGQT+ KAV DLG  EA  GLTFVCLSRAKRLVDL+VEPM FDR+   G   T+K RL+EEVRL
Sbjct:   10 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRIGNLGNSSTMKGRLQEEVRL 90

[Close]

BLAST of mRNA_S-dermatodea_contig11294.831.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 2.190e-31
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 1

Query:    4 REQLPLALCWAITRHKSQGQTVDKAVTDLGKSEATAGLTFVCLSRAKRLVDLLVEPMPFDRLSKFGEKPTLKLRLEEEVRL 246
            R QLPL LCWAIT HKSQGQT+ KAV DLG  EA  GLTFVCLSRAKRLVDL+VEPM FDR+   G  PT+K RL+EEVRL
Sbjct:  360 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 440

[Close]

BLAST of mRNA_S-dermatodea_contig11294.831.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 2.670e-31
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 1

Query:    4 REQLPLALCWAITRHKSQGQTVDKAVTDLGKSEATAGLTFVCLSRAKRLVDLLVEPMPFDRLSKFGEKPTLKLRLEEEVRL 246
            R QLPL LCWAIT HKSQGQT+ KAV DLG  EA  GLTFVCLSRAKRLVDL+VEPM FDR+   G  PT+K RL+EEVRL
Sbjct:   77 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 157

[Close]

BLAST of mRNA_S-dermatodea_contig11294.831.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 5.790e-31
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 1

Query:    4 REQLPLALCWAITRHKSQGQTVDKAVTDLGKSEATAGLTFVCLSRAKRLVDLLVEPMPFDRLSKFGEKPTLKLRLEEEVRL 246
            R QLPL LCWAIT HKSQGQT+ KAV DLG  EA  GLTFVCLSRAKRLVDL+VEPM FDR+   G  PT+K RL+EEVRL
Sbjct:  356 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 436

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig11294.831.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig11294.831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KSF1_9PHAE	1.430e-34	74.07	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCP5_9PHAE	8.600e-34	74.07	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JMH2_9PHAE	8.840e-34	74.07	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUS2_9PHAE	1.290e-32	74.07	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KN08_9PHAE	1.600e-32	74.07	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KFN2_9PHAE	2.500e-32	73.08	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K214_9PHAE	8.180e-32	72.84	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JFG8_9PHAE	2.190e-31	74.07	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K4U7_9PHAE	2.670e-31	74.07	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J8Y8_9PHAE	5.790e-31	74.07	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig11294	contig	S-dermatodea_contig11294:6722..6976 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Metazoa
Seed ortholog score	81.6
Seed ortholog evalue	1.9e-13
Seed eggNOG ortholog	400682.PAC_15726636
EggNOG free text desc.	G-quadruplex DNA unwinding
EggNOG OGs	3A1N8@33154,3BR8V@33208,COG0507@1,KOG0987@2759
COG Functional cat.	L
Best tax level	Metazoa
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	1
Model size	255
Cds size	255
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622924195.6334743-CDS-S-dermatodea_contig11294:6721..6976	1622924195.6334743-CDS-S-dermatodea_contig11294:6721..6976	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig11294 6722..6976 +
1694079084.2343493-CDS-S-dermatodea_contig11294:6721..6976	1694079084.2343493-CDS-S-dermatodea_contig11294:6721..6976	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig11294 6722..6976 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig11294.831.1	prot_S-dermatodea_contig11294.831.1	Saccorhiza dermatodea SderLu1190fm monoicous	polypeptide	S-dermatodea_contig11294 6722..6976 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-dermatodea_contig11294:6722..6976+
coding sequence from alignment at S-dermatodea_contig11294:6722..6976+

protein sequence of mRNA_S-dermatodea_contig11294.831.1

>prot_S-dermatodea_contig11294.831.1 ID=prot_S-dermatodea_contig11294.831.1|Name=mRNA_S-dermatodea_contig11294.831.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=85bp
SREQLPLALCWAITRHKSQGQTVDKAVTDLGKSEATAGLTFVCLSRAKRL
VDLLVEPMPFDRLSKFGEKPTLKLRLEEEVRLKAV

mRNA from alignment at S-dermatodea_contig11294:6722..6976+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-dermatodea_contig11294.831.1 ID=mRNA_S-dermatodea_contig11294.831.1|Name=mRNA_S-dermatodea_contig11294.831.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at S-dermatodea_contig11294:6722..6976+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGCGAGAGCAACTGCCGCTTGCCCTGTGCTGGGCGATTACCAGGCACAA
GAGTCAGGGTCAGACTGTAGATAAGGCTGTGACCGACCTGGGGAAATCCG
AGGCCACCGCAGGGCTGACATTCGTGTGCCTCAGCCGCGCCAAGCGACTC
GTAGATCTCCTGGTGGAGCCCATGCCCTTCGACAGACTTTCCAAGTTTGG
CGAAAAACCTACTCTAAAGCTTAGACTAGAAGAGGAAGTGCGCCTTAAAG
CGGTC

Coding sequence (CDS) from alignment at S-dermatodea_contig11294:6722..6976+

>mRNA_S-dermatodea_contig11294.831.1 ID=mRNA_S-dermatodea_contig11294.831.1|Name=mRNA_S-dermatodea_contig11294.831.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at S-dermatodea_contig11294:6722..6976+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGCGAGAGCAACTGCCGCTTGCCCTGTGCTGGGCGATTACCAGGCACAA
GAGTCAGGGTCAGACTGTAGATAAGGCTGTGACCGACCTGGGGAAATCCG
AGGCCACCGCAGGGCTGACATTCGTGTGCCTCAGCCGCGCCAAGCGACTC
GTAGATCTCCTGGTGGAGCCCATGCCCTTCGACAGACTTTCCAAGTTTGG
CGAAAAACCTACTCTAAAGCTTAGACTAGAAGAGGAAGTGCGCCTTAAAG
CGGTCTCGCGAGAGCAACTGCCGCTTGCCCTGTGCTGGGCGATTACCAGG
CACAAGAGTCAGGGTCAGACTGTAGATAAGGCTGTGACCGACCTGGGGAA
ATCCGAGGCCACCGCAGGGCTGACATTCGTGTGCCTCAGCCGCGCCAAGC
GACTCGTAGATCTCCTGGTGGAGCCCATGCCCTTCGACAGACTTTCCAAG
TTTGGCGAAAAACCTACTCTAAAGCTTAGACTAGAAGAGGAAGTGCGCCT
TAAAGCGGTC