mRNA_S-dermatodea_contig11290.827.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11290.827.1
Unique NamemRNA_S-dermatodea_contig11290.827.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11290.827.1 vs. uniprot
Match: D7FQB6_ECTSI (Ribosomal_S17_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB6_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 9.170e-10
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 3 
Query:  279 LSGAGTMGLKDYREAEQHEKAYQKQDAVFVGAKRVLGKKVA 401
            L+G   +   DYREAEQHEKAYQKQDA+FVGAKRVLGKKVA
Sbjct:   17 LTGHRFLVPPDYREAEQHEKAYQKQDAIFVGAKRVLGKKVA 57
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BLAST of mRNA_S-dermatodea_contig11290.827.1 vs. uniprot
Match: A0A7S2XWS0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWS0_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.900e-5
Identity = 22/30 (73.33%), Postives = 28/30 (93.33%), Query Frame = 3 
Query:  306 KDYREAEQHEKAYQKQDAVFVGAKRVLGKK 395
            ++Y+EA+QHEKAYQKQDAVF+  KRV+GKK
Sbjct:    3 QEYKEADQHEKAYQKQDAVFIAKKRVIGKK 32
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BLAST of mRNA_S-dermatodea_contig11290.827.1 vs. uniprot
Match: A0A835Z9X9_9STRA (Ribosomal protein S17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X9_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.060e-5
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 3 
Query:  309 DYREAEQHEKAYQKQDAVFVGAKRVLGKK 395
            +Y+EAEQ EKAYQKQDAVF+ AKRV+GKK
Sbjct:    2 EYKEAEQTEKAYQKQDAVFIAAKRVIGKK 30
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BLAST of mRNA_S-dermatodea_contig11290.827.1 vs. uniprot
Match: A0A7S0L9L5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L9L5_9EUKA)

HSP 1 Score: 50.1 bits (118), Expect = 7.030e-5
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = 3 
Query:  309 DYREAEQHEKAYQKQDAVFVGAKRVLGKK 395
            D++EA+Q EKAYQKQDA+F+G KRVLGKK
Sbjct:    2 DFKEADQTEKAYQKQDAIFIGRKRVLGKK 30
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11290.827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FQB6_ECTSI9.170e-1078.05Ribosomal_S17_N domain-containing protein n=1 Tax=... [more]
A0A7S2XWS0_9STRA1.900e-573.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z9X9_9STRA5.060e-579.31Ribosomal protein S17-domain-containing protein n=... [more]
A0A7S0L9L5_9EUKA7.030e-575.86Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11290contigS-dermatodea_contig11290:4983..5933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924195.3622763-CDS-S-dermatodea_contig11290:4982..50551622924195.3622763-CDS-S-dermatodea_contig11290:4982..5055Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11290 4983..5055 -
1694079084.0583735-CDS-S-dermatodea_contig11290:4982..50551694079084.0583735-CDS-S-dermatodea_contig11290:4982..5055Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11290 4983..5055 -
1622924195.3759172-CDS-S-dermatodea_contig11290:5604..59331622924195.3759172-CDS-S-dermatodea_contig11290:5604..5933Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11290 5605..5933 -
1694079084.0685482-CDS-S-dermatodea_contig11290:5604..59331694079084.0685482-CDS-S-dermatodea_contig11290:5604..5933Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11290 5605..5933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11290.827.1prot_S-dermatodea_contig11290.827.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11290 4983..5933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11290.827.1

>prot_S-dermatodea_contig11290.827.1 ID=prot_S-dermatodea_contig11290.827.1|Name=mRNA_S-dermatodea_contig11290.827.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=134bp
AVRPRYQALERSLSPNIVLVVDWWEKQPANSIAWVIIFWFLSILWLVSST
PACRTKPRCSGHPLAACTQLELPRQSLTQLFSYTLATVVAAVFCPGQAPW
DLRTTARRSSTRRLTRSRMPSSWERSAFSARRLP
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mRNA from alignment at S-dermatodea_contig11290:4983..5933-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11290.827.1 ID=mRNA_S-dermatodea_contig11290.827.1|Name=mRNA_S-dermatodea_contig11290.827.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=951bp|location=Sequence derived from alignment at S-dermatodea_contig11290:4983..5933- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGTCCGACCTAGGTACCAAGCATTAGAGCGCTCGCTCTCGCCCAATAT
CGTCTTGGTAGTCGATTGGTGGGAAAAGCAGCCCGCGAATTCGATTGCAT
GGGTCATCATATTTTGGTTTTTGTCTATTTTGTGGCTTGTGTCTTCCACC
CCAGCCTGTCGCACGAAGCCTCGGTGCTCCGGCCACCCGCTAGCAGCATG
CACGCAGCTTGAGCTGCCACGCCAATCACTCACGCAGCTCTTCTCGTATA
CCCTGGCCACTGTCGTTGCTGCTGTGTTCTGTCCGGGGCAGGCACCATGG
GACTTAAGGACTACCGCGAGGCGGAGCAGGTGGGTGATATTCGGTTGTGC
CCGCTTGGGTGGTGGGTGGGGTGGTTGGGTTGTGGGTGGGTAGGTGGGTG
GGTGGGCCGCGTCGACTATCGTGGGTGGCCGCTACAACGGTAGTAGCTTA
GGCACGGGGAGGAGGATTGGGTCGATAACAGGCCTTGGGGTCTAACCACG
CTCGAGAGATCTAGGACGAAGGTCCCGAATTTTGGGGCAAAATAGAGGTT
GTGATACTGTAGACAAGTATACATATCAGATGAGAGGGGGACGGGCGACT
GACTGCGGCCTCCGGACAGCAGTTGGGGTCGGGGGCAATTTGAGCCGCTG
TACACCCGTATAAATTTTCACTCAACTCGCAGGCACTCGACCGGTGTCCT
TCGCTACCTCTTCTTGTAGACCCCTCTCCTCTCGCTTGTGCTGTAAAGTA
CGGCATATATTGGCGCTCGCCCTACCCTTGATGCCCCCTATCATACTGAA
CGCTCTCTCTACCCTATATACTGCTCTGTACGCTCTCTCTTGCGGATGAC
TATTTGTCAAATTATCTCCCGCAAACAGCACGAGAAGGCTTACCAGAAGC
AGGATGCCGTCTTCGTGGGAGCGAAGCGCGTTCTCGGCAAGAAGGTTGCC
A
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Coding sequence (CDS) from alignment at S-dermatodea_contig11290:4983..5933-

>mRNA_S-dermatodea_contig11290.827.1 ID=mRNA_S-dermatodea_contig11290.827.1|Name=mRNA_S-dermatodea_contig11290.827.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at S-dermatodea_contig11290:4983..5933- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGTCCGACCTAGGTACCAAGCATTAGAGCGCTCGCTCTCGCCCAATAT
CGTCTTGGTAGTCGATTGGTGGGAAAAGCAGCCCGCGAATTCGATTGCAT
GGGTCATCATATTTTGGTTTTTGTCTATTTTGTGGCTTGTGTCTTCCACC
CCAGCCTGTCGCACGAAGCCTCGGTGCTCCGGCCACCCGCTAGCAGCATG
CACGCAGCTTGAGCTGCCACGCCAATCACTCACGCAGCTCTTCTCGTATA
CCCTGGCCACTGTCGTTGCTGCTGTGTTCTGTCCGGGGCAGGCACCATGG
GACTTAAGGACTACCGCGAGGCGGAGCAGGCTGTCCGACCTAGGTACCAA
GCATTAGAGCGCTCGCTCTCGCCCAATATCGTCTTGGTAGTCGATTGGTG
GGAAAAGCAGCCCGCGAATTCGATTGCATGGGTCATCATATTTTGGTTTT
TGTCTATTTTGTGGCTTGTGTCTTCCACCCCAGCCTGTCGCACGAAGCCT
CGGTGCTCCGGCCACCCGCTAGCAGCATGCACGCAGCTTGAGCTGCCACG
CCAATCACTCACGCAGCTCTTCTCGTATACCCTGGCCACTGTCGTTGCTG
CTGTGTTCTGTCCGGGGCAGGCACCATGGGACTTAAGGACTACCGCGAGG
CGGAGCAGCACGAGAAGGCTTACCAGAAGCAGGATGCCGTCTTCGTGGGA
GCGAAGCGCGTTCTCGGCAAGAAGGTTGCCACACGAGAAGGCTTACCAGA
AGCAGGATGCCGTCTTCGTGGGAGCGAAGCGCGTTCTCGGCAAGAAGGTT
GCCA
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