mRNA_S-dermatodea_contig11285.819.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11285.819.1
Unique NamemRNA_S-dermatodea_contig11285.819.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11285.819.1 vs. uniprot
Match: D7G435_ECTSI (Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G435_ECTSI)

HSP 1 Score: 381 bits (978), Expect = 4.600e-122
Identity = 192/353 (54.39%), Postives = 255/353 (72.24%), Query Frame = 2 
Query:  257 FSPEWQHEFAAGDIGCEEARGSFVWRPQGFGSNINNLLNAWVHSIAVENWSDMAVIIDSDQMTHIKCAEESGGQASSGWGCLFSPMAHLCTFESGESWADYMEAMDVSREDLEEASRLDQRAVRFHPEDIVASLEDLDVDHVGALAATAAHLWSNISPWLREDVDFIT--SVDQVFETAPYVGLHIRRGDKISNHEAEAIGI-EEYLEAALGYLEEYPDRTSPDEIKGIWIASDDSTVVDKVRGIAHDYFPNVASEAIVYVSNGVPGGPEGQGTEMETRTNKQGYGAFAYMLADFKRLVKAEVFIGTFSSNVGRLMVVLREADGTKPRESAISVDTPNWWPGRD*PARASSGV 1306
            FS EW  E+A G+ GC+ ARGSF+WR QG GSNINN+LNAWV++++VE WSDM V++  +QM  + C EESGG+A +GW C+F PM HLCTF S ESW +YM + D+   +L E +RLDQ AVRFHPE+IVASLE   VDH+ ALAA A +LWSN++PWL+ DVDF+T  S   VF+ +P++GLHIRRGDK+++    ++ + +EYLEAA+ +LE    + S  +IKGIW+ASD+  V+ KV+ IA DY PNV+ + I + S GV GGPE   T   TRT+K+ Y  F Y LAD ++L  A++F+GTFSSN+GRL+V+LRE+ G K R SA+S+D P W  GR    RA  GV
Sbjct:  106 FSSEWAVEYARGEEGCDLARGSFMWRGQGLGSNINNMLNAWVYALSVEKWSDMTVVVGENQMKWVDCGEESGGEAQTGWDCIFKPMPHLCTFPSAESWKEYMVSKDLPEAELVEVARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVTHGRRASMYLCKEYLEAAVEFLEGDDSQLSVGDIKGIWVASDEPKVIAKVKQIAPDYLPNVSEDDIFWASGGVEGGPEIGRTA--TRTDKETYADFVYTLADLQQLTAADLFVGTFSSNMGRLLVLLRESIGLKDRASAVSIDGP-WRAGRR-RRRAMRGV 454
[Close]
BLAST of mRNA_S-dermatodea_contig11285.819.1 vs. uniprot
Match: A0A6H5JTL0_9PHAE (GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL0_9PHAE)

HSP 1 Score: 378 bits (971), Expect = 3.950e-121
Identity = 192/364 (52.75%), Postives = 254/364 (69.78%), Query Frame = 2 
Query:  191 GGVMAESASSHPTQSLKFETTAFSPEWQHEFAAGDIGCEEARGSFVWRPQGFGSNINNLLNAWVHSIAVENWSDMAVIIDSDQMTHIKCAEESGGQASSGWGCLFSPMAHLCTFESGESWADYMEAMDVSREDLEEASRLDQRAVRFHPEDIVASLEDLDVDHVGALAATAAHLWSNISPWLREDVDFIT--SVDQVFETAPYVGLHIRRGDKISNHEAEAIGIEEYLEAALGYLEEYPDRTSPDEIKGIWIASDDSTVVDKVRGIAHDYFPNVASEAIVYVSNGVPGGPEGQGTEMETRTNKQGYGAFAYMLADFKRLVKAEVFIGTFSSNVGRLMVVLREADGTKPRESAISVDTPNWWPGR 1276
            GG  A +A++ P          FS EW  E+A G+ GC+ ARGSF+WR  G GSN+NN+LNAWV++++VE WSDM V++D +QM  + C EESGG+A +GW CLF PM HLCTF S E   ++M +  + + DL EA+RLDQ AVRFHPE+IVASLE   VDH+ ALAA A +LWSN++PWL+ DVDF+T  S   VF+ +P++GLHIRRGDK+S  EA     EEYLE A+ +LE    + S  +IKGIW+ASD+  V+ KV+ IA DY PNV+   I + S GV GGPE + T   TRT+++ Y  F Y  AD ++L  A++F+GTFSSN+GRL+V+LRE+ G K R SA+S+D P W  GR
Sbjct:   87 GGESAAAAATAPA-------VLFSSEWAAEYARGEAGCDLARGSFMWRGHGLGSNVNNMLNAWVYALSVEKWSDMTVVVDENQMKQVDCEEESGGEAQAGWDCLFKPMPHLCTFPSAE---EHMVSKGLPKADLVEAARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVSQGEASMYLCEEYLETAVEFLEGNDSQLSVGDIKGIWVASDEPKVIAKVKQIAQDYLPNVSEGDIFWASGGVEGGPEIERTA--TRTDQETYADFVYTFADLQQLTAADLFVGTFSSNIGRLLVLLRESIGLKDRASAVSIDGP-WRAGR 437
[Close]
BLAST of mRNA_S-dermatodea_contig11285.819.1 vs. uniprot
Match: A0A6H5LR29_9PHAE (GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LR29_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 3.440e-37
Identity = 82/183 (44.81%), Postives = 110/183 (60.11%), Query Frame = 2 
Query:  710 LWSNISPWLREDV-DFITSVD-QVFETAPYVGLHIRRGDKISNHEAEAIGIEEYLEAALGYLEEYPDRTSPDEIKGIWIASDDSTVVDKVRGIAHDYFPNVASEAIVYVSNGVPGGPEGQGTEMETRTNKQGYGAFAYMLADFKRLVKAEVFIGTFSSNVGRLMVVLREADGTKPRESAISVD 1252
            LW N++PWL+EDV   +   D  VF   P+VGLH+RRGDK+   EA+ +  +EYL AA  + +    +   D I+ IW+ASDD  VV++VR IA  YFPNV  E IV+VS G  GG       + T T  QGY  F  + AD K L    +F+GT++SNV RL+ +LRE      R+S IS+D
Sbjct:  109 LWKNLTPWLQEDVRKALERPDLDVFRRKPFVGLHVRRGDKVGEGEAQKVETKEYLSAAARFFDNKASQDKQD-IEAIWVASDDHKVVEEVRAIARQYFPNVLDEDIVWVSGGARGGA------VTTHTKSQGYQGFVMVFADLKMLAAGSLFVGTYTSNVSRLVALLREGIHGHARDSCISLD 284
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BLAST of mRNA_S-dermatodea_contig11285.819.1 vs. uniprot
Match: D8LU00_ECTSI (Similar to putative alpha-6-fucosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU00_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 2.540e-26
Identity = 64/162 (39.51%), Postives = 95/162 (58.64%), Query Frame = 2 
Query:  791 YVGLHIRRGDKISNHEAEAIGIEEYLEAALGYLEEYPDRTSPDEIKGIWIASDDSTVVDKVRGIAHDYFPNVASEAIVYVSNGVPGGPEGQGTEMETRTNKQGYGAFAYMLADFKRLVKAEVFIGTFSSNVGRLMVVLREADGTKPRESAISVDTPNWWPGR 1276
            YVGLHIRR DK +  E + +  + YL  A+ YL    +  +   I GIW++SDD  V D+V+ +A ++FP +A  A++YV+ G P         M    ++  Y A  Y+ A+ + L  + VF GTFSSNVGR++ ++R+     P ESA+SVD P W+ GR
Sbjct:    6 YVGLHIRRTDKAN--EVQPVKTKAYLAKAVNYLASPTNDMAATNITGIWVSSDDEAVFDEVKQLASEFFPGIAPNAVLYVTGGKPV------QLMRGAADRNSYEAMVYLRAELEMLAGSAVFSGTFSSNVGRMVALMRKTLNM-PDESAVSVDFPAWFAGR 158
[Close]
BLAST of mRNA_S-dermatodea_contig11285.819.1 vs. uniprot
Match: D7FU71_ECTSI (GT23 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU71_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.910e-16
Identity = 54/181 (29.83%), Postives = 89/181 (49.17%), Query Frame = 2 
Query:  512 MAHLCTFESGESWADYMEAMDVSREDLEEASRLD----QRAVRFHPEDIVASLEDLDVDHVGALAATAAHLWSNISPWLREDVDFITSVDQVFE--TAPYVGLHIRRGDKISNHEAEAIGIEEYLEAALGYLEEYPDRTS-PDEIKGIWIASDDSTVVDKVRGIAHDYFPNVASEAIVYVS 1033
            MA LC F+S E    ++ A      + EE+ R++        + H             D     AA   +++SN+ PW +ED D +     V    +  YV +H+RRGDK++  EA    +E YL+AA   L+        P+ I G+W++SDD +V+ +V+ +A  YF NV  + +V ++
Sbjct:    1 MARLCVFDSNEDVGKFLMA------NYEESQRINVPQPSPRTQLH-------------DETETAAALLGYVYSNMQPWFKEDTDAMLLQSDVHSVRSVRYVAIHVRRGDKVTLQEASRTEVEVYLQAAASILQNSTGSVDGPNSIGGLWVSSDDPSVLPEVKALASTYFANVQDDRVVSIT 162
[Close]
BLAST of mRNA_S-dermatodea_contig11285.819.1 vs. uniprot
Match: R7QMX9_CHOCR (Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMX9_CHOCR)

HSP 1 Score: 71.2 bits (173), Expect = 2.310e-10
Identity = 56/171 (32.75%), Postives = 85/171 (49.71%), Query Frame = 2 
Query:  773 VFETAPYVGLHIRRGDKISNHEAEAIGIEEYLEAALGYLEEYPDRTSPDEIKGIWIASDDSTVVDKVRGIAHDYFPNVASEAIVYVSNGVPGGPEGQGTEMETRTN----KQGYGAFAYMLADFKRLVKAEVFIGTFSSNVGRLMVVLREADGTKPRESAISVDTPNWWPG 1273
            V+    YVG+H+RRGDK  + E   + +  Y  A          R    E   +++A+DD   V  +R +       +A   +V +      G EG+G   +  TN    K+ YG    +LA+ + L  A+VF+GTFSSN+GRL+ VLRE D      +++S+D   W PG
Sbjct:   35 VWGAGEYVGVHVRRGDK--SKEVADVPLWRYAAAV---------RAVSGEEMAVFVAADDGASVRGLRQL-------LAGRKVVAIR-----GAEGRGGHDQLATNRGYMKENYGRVVELLAEVEALRGAKVFVGTFSSNLGRLVHVLREGD----ERNSVSLDD-RWAPG 177
[Close]
BLAST of mRNA_S-dermatodea_contig11285.819.1 vs. uniprot
Match: A0A5J4YU31_PORPP (Alpha-(1,6)-fucosyltransferase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YU31_PORPP)

HSP 1 Score: 67.8 bits (164), Expect = 3.830e-8
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = 2 
Query:  791 YVGLHIRRGDKISNHEAEAIGIEEYLEAALGYLEEYPDRTSPDEIKGIWIASDDSTVVDKVRGIAHDYFPNVASE-AIVYVSNGVPGGPEGQGTEMETRTNKQ--GYGAFAYMLADFKRLVKAEVFIGTFSSNVGRLMVVLREADGTKPRESAISVDTPNWWPG 1273
            Y+G+HIRRGDK    +A  + I +Y+ A +     Y       +++ +++ SDD  V+++++ +        +   AIV  S     G E Q      R+  +  G    A +L +   L +A  F+GTFSSNVGRL+V LR+A   +  +++IS+DT  W PG
Sbjct:  285 YMGVHIRRGDKYK--DAPYVPIAQYVNAIMWAANRY-------DLRMVYVCSDDFAVINELKDMVRARTAATSLRLAIVDTSQSSREGHE-QRLSNNARSQNELVGVEMTAQLLLELSLLQRASFFVGTFSSNVGRLVVALRDA---RAPQTSISLDTA-WSPG 434
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BLAST of mRNA_S-dermatodea_contig11285.819.1 vs. uniprot
Match: A0A8J1YCB4_OWEFU (Ofus.G26152 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1YCB4_OWEFU)

HSP 1 Score: 63.5 bits (153), Expect = 1.260e-7
Identity = 45/142 (31.69%), Postives = 73/142 (51.41%), Query Frame = 2 
Query:  788 PYVGLHIRRGDKISNHEAEAIGIEEYLEAALGYLEEYPDRTSPDEIKGIWIASDDSTVVDKVRGIAHDYFPNVASEAIVYVSNGVPGGPEGQGTEMETRTNKQGYGAFAYMLADFKRLVKAEVFIGTFSSNVGRLMVVLREA 1213
            P +G+HIRRGDKI   EAE I   +Y+E    Y+ +   R +  E+  I+IASDD T++ +++     Y        I+Y+ N          ++++             ++ D   L + + FIGTFSSNVGRL+  L+++
Sbjct:   46 PIIGVHIRRGDKI--REAEPIPTYKYIERIDAYINQLGFRMTSHELPSIFIASDDRTLIGQIKEHYTQY-------NIIYIPNYFS-------SDLDL------------IMLDVLLLKECDYFIGTFSSNVGRLVYELQQS 159
[Close]
BLAST of mRNA_S-dermatodea_contig11285.819.1 vs. uniprot
Match: A0A8J1YCC3_OWEFU (Ofus.G26194 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1YCC3_OWEFU)

HSP 1 Score: 65.5 bits (158), Expect = 1.630e-7
Identity = 46/142 (32.39%), Postives = 75/142 (52.82%), Query Frame = 2 
Query:  788 PYVGLHIRRGDKISNHEAEAIGIEEYLEAALGYLEEYPDRTSPDEIKGIWIASDDSTVVDKVRGIAHDYFPNVASEAIVYVSNGVPGGPEGQGTEMETRTNKQGYGAFAYMLADFKRLVKAEVFIGTFSSNVGRLMVVLREA 1213
            P +G+HIRRGDKI+  EAE I   +Y+E    Y+ +   +TS D++  I+IASDD  ++D+++     Y        I++V +             +T  +         ++ D   L + + FIGTFSSNVGRL+  L+++
Sbjct:  241 PIIGVHIRRGDKIT--EAEPIPTYKYIERIEAYINQLDYKTSNDKVPSIFIASDDRKLIDQIKQHYTQY-------NIIHVPHYF----------FKTHLD--------LIMFDILLLKECDYFIGTFSSNVGRLVYELQQS 355
[Close]
BLAST of mRNA_S-dermatodea_contig11285.819.1 vs. uniprot
Match: A0A1W4XCQ9_AGRPL (Alpha-(1,6)-fucosyltransferase n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A1W4XCQ9_AGRPL)

HSP 1 Score: 64.7 bits (156), Expect = 4.080e-7
Identity = 71/285 (24.91%), Postives = 120/285 (42.11%), Query Frame = 2 
Query:  488 GWGCLFSPMAHLCTFESGES---WADYMEAMDVSREDLEEASRLDQRAVRFHPEDIVASLEDLDVDHVGALAATAAHLWSNISPWLREDVDFITSVDQVFE------------TAPYVGLHIRRGDKISNHEAEAIGIEEYLEAALGYLEEYPDRT--SPDEIKGIWIASDDSTVVDKVRGIAHDYF----PNVASEAIVYVSNGVPGGPEGQGTEMETRTNKQGYGAFAYMLADFKRLVKAEVFIGTFSSNVGRLMVVLREADGTKPRESAISVDTPNWWPGRD 1279
            GW  +F P++  CT   G S   W+++ +A  V+   ++      +      P+D+V  L  L  D V         +W     W+ + + ++    +  E              P VG+H+RR DKI   EA    IEEY+ A    +E+Y D    S D ++ ++IASDD TV+ + R    +Y     P ++S A V                 ETR  +    +   +++D   L +++  + TFSS V RL   + +           S+D   ++ G+D
Sbjct:  247 GWETIFKPVSDTCTDPGGASVKEWSEHPDAQVVNLTIIDYVQPKPKFIPPAVPKDLVLRLARLHGDPV---------IW-----WIGQFLKYLLRPQEATEKLLNDATKKMNFAKPVVGIHVRRTDKIGT-EASFHSIEEYMTA----VEDYYDALDMSEDNVRRVYIASDDPTVITEAREKYPNYEILGDPKISSSAAV-----------------ETRYTED---SLKGIISDIHFLSQSDYLVCTFSSQVCRLAYEIMQTKYPDASARFRSLDNIFYYGGQD 492
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11285.819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G435_ECTSI4.600e-12254.39Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Ta... [more]
A0A6H5JTL0_9PHAE3.950e-12152.75GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5LR29_9PHAE3.440e-3744.81GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D8LU00_ECTSI2.540e-2639.51Similar to putative alpha-6-fucosyltransferase n=1... [more]
D7FU71_ECTSI1.910e-1629.83GT23 domain-containing protein n=1 Tax=Ectocarpus ... [more]
R7QMX9_CHOCR2.310e-1032.75Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Ta... [more]
A0A5J4YU31_PORPP3.830e-832.32Alpha-(1,6)-fucosyltransferase n=1 Tax=Porphyridiu... [more]
A0A8J1YCB4_OWEFU1.260e-731.69Ofus.G26152 protein n=1 Tax=Owenia fusiformis TaxI... [more]
A0A8J1YCC3_OWEFU1.630e-732.39Ofus.G26194 protein n=1 Tax=Owenia fusiformis TaxI... [more]
A0A1W4XCQ9_AGRPL4.080e-724.91Alpha-(1,6)-fucosyltransferase n=1 Tax=Agrilus pla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11285contigS-dermatodea_contig11285:1182..7098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score382.5
Seed ortholog evalue2.6e-103
Seed eggNOG ortholog2880.D7G435
KEGG koko:K00717
KEGG ReactionR05988,R09319
KEGG Pathwayko00510,ko00513,ko00533,ko01100,ko05202,map00510,map00513,map00533,map01100,map05202
KEGG ModuleM00075
EggNOG free text desc.glycoprotein 6-alpha-L-fucosyltransferase activity
EggNOG OGsKOG3705@1,KOG3705@2759
EC2.4.1.68
COG Functional cat.M
CAZyGT23
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons6
Model size2115
Cds size1278
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11285.819.1prot_S-dermatodea_contig11285.819.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11285 2015..7094 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924194.6895788-UTR-S-dermatodea_contig11285:1181..20141622924194.6895788-UTR-S-dermatodea_contig11285:1181..2014Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11285 1182..2014 -
1694079083.528541-UTR-S-dermatodea_contig11285:1181..20141694079083.528541-UTR-S-dermatodea_contig11285:1181..2014Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11285 1182..2014 -
1622924194.7650568-UTR-S-dermatodea_contig11285:7094..70981622924194.7650568-UTR-S-dermatodea_contig11285:7094..7098Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11285 7095..7098 -
1694079083.6152363-UTR-S-dermatodea_contig11285:7094..70981694079083.6152363-UTR-S-dermatodea_contig11285:7094..7098Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11285 7095..7098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924194.7087395-CDS-S-dermatodea_contig11285:2014..22001622924194.7087395-CDS-S-dermatodea_contig11285:2014..2200Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11285 2015..2200 -
1694079083.5445237-CDS-S-dermatodea_contig11285:2014..22001694079083.5445237-CDS-S-dermatodea_contig11285:2014..2200Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11285 2015..2200 -
1622924194.7182505-CDS-S-dermatodea_contig11285:3426..36631622924194.7182505-CDS-S-dermatodea_contig11285:3426..3663Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11285 3427..3663 -
1694079083.5544617-CDS-S-dermatodea_contig11285:3426..36631694079083.5544617-CDS-S-dermatodea_contig11285:3426..3663Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11285 3427..3663 -
1622924194.7258418-CDS-S-dermatodea_contig11285:4181..43461622924194.7258418-CDS-S-dermatodea_contig11285:4181..4346Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11285 4182..4346 -
1694079083.5644548-CDS-S-dermatodea_contig11285:4181..43461694079083.5644548-CDS-S-dermatodea_contig11285:4181..4346Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11285 4182..4346 -
1622924194.7339225-CDS-S-dermatodea_contig11285:4776..49261622924194.7339225-CDS-S-dermatodea_contig11285:4776..4926Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11285 4777..4926 -
1694079083.5790431-CDS-S-dermatodea_contig11285:4776..49261694079083.5790431-CDS-S-dermatodea_contig11285:4776..4926Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11285 4777..4926 -
1622924194.7438154-CDS-S-dermatodea_contig11285:6132..63141622924194.7438154-CDS-S-dermatodea_contig11285:6132..6314Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11285 6133..6314 -
1694079083.5952988-CDS-S-dermatodea_contig11285:6132..63141694079083.5952988-CDS-S-dermatodea_contig11285:6132..6314Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11285 6133..6314 -
1622924194.7542365-CDS-S-dermatodea_contig11285:6736..70941622924194.7542365-CDS-S-dermatodea_contig11285:6736..7094Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11285 6737..7094 -
1694079083.605375-CDS-S-dermatodea_contig11285:6736..70941694079083.605375-CDS-S-dermatodea_contig11285:6736..7094Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11285 6737..7094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11285.819.1

>prot_S-dermatodea_contig11285.819.1 ID=prot_S-dermatodea_contig11285.819.1|Name=mRNA_S-dermatodea_contig11285.819.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=426bp
MAPAFFRALEARPTADKPGAAGVKPCARRSSRRKEVFPQSSFRGRRIGKA
ALLQALGCSILRGGVMAESASSHPTQSLKFETTAFSPEWQHEFAAGDIGC
EEARGSFVWRPQGFGSNINNLLNAWVHSIAVENWSDMAVIIDSDQMTHIK
CAEESGGQASSGWGCLFSPMAHLCTFESGESWADYMEAMDVSREDLEEAS
RLDQRAVRFHPEDIVASLEDLDVDHVGALAATAAHLWSNISPWLREDVDF
ITSVDQVFETAPYVGLHIRRGDKISNHEAEAIGIEEYLEAALGYLEEYPD
RTSPDEIKGIWIASDDSTVVDKVRGIAHDYFPNVASEAIVYVSNGVPGGP
EGQGTEMETRTNKQGYGAFAYMLADFKRLVKAEVFIGTFSSNVGRLMVVL
READGTKPRESAISVDTPNWWPGRD*
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mRNA from alignment at S-dermatodea_contig11285:1182..7098-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11285.819.1 ID=mRNA_S-dermatodea_contig11285.819.1|Name=mRNA_S-dermatodea_contig11285.819.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5917bp|location=Sequence derived from alignment at S-dermatodea_contig11285:1182..7098- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGATGGCACCTGCTTTCTTTCGTGCGCTGGAAGCGCGGCCGACCGCGG
ACAAGCCAGGCGCAGCAGGCGTGAAGCCGTGCGCGAGACGTTCCTCCCGC
AGAAAGGAAGTTTTTCCCCAATCCTCTTTCCGCGGCCGCAGAATCGGCAA
GGCTGCGCTCCTCCAAGCGCTAGGGTGCAGCATACTGAGGGGAGGAGTGA
TGGCGGAAAGTGCATCGTCACATCCTACCCAGAGCCTCAAGTTTGAGACC
ACGGCTTTCTCCCCTGAGTGGCAACACGAGTTTGCTGCTGGAGATATTGG
CTGTGAAGAAGCTCGAGGCAGTTTCGTGTGGCGTCCTCAAGGGTTTGGCT
CGAACATTAACAGTGAGTGTACACTACTTGTCCGCAGAGGGGGACAGGAA
AGGAATTTACGCTTGTTGTAGTGGGAGCGCCTTCTCGCTACTTACTGTTG
CTCTGCCGACCATGTCAATGTGCTATTACTCCTGTATCTTACGGGTGCAC
ATCCGCATCCCCCCCCCCCAATCGTGTAGCAGACGCCACATAGATATTGA
GATCTCAGGCAGTCCCCTGCGCCCACCGAATGCGAGGTGTATTCACCCGA
ATTCACTGGTGAATACATGCGAAGGTGATCATTGGTGCTGTGCTGGACTT
TCCACGGAAACACAGAATGCATGGTAAGTGTATTATGAATATACATACAC
CCCCCATCAGGAGTACCCTTTTTAGGCTTTAATTCCGCGGTCTCTGTTGG
CTCGCACCCCCCCCTCCCTCCCCGTGCCCCTAAGACCTGTTGAATGCATG
GGTGCACAGCATTGCTGTGGAGAACTGGAGCGACATGGCTGTCATCATCG
ACTCAGACCAAATGACGCACATCAAGTGTGCTGAGGAAAGTGGCGGGCAG
GCTTCGAGCGGATGGGGTTGCTTATTCAGCCCTATGGCGCACTTGTGCAC
GTTCGAGTCGGGCGAGGTGAGGATATATCTCTCTAGGCTGTCGTTTTGCT
GTCGTGTGGTTCGCGCAGGACAGCACCTGTTTTTTGCGTGCGAGTTCACG
CTCGAAGCTTGCCAGCGTCCCGCCTCTTCATTGAGATGGCAAGAGTGTTG
GCATGTTGAGTGTGTGACGATGATTTCTCGTGTAGACGCGCAGAAGTGCC
ACAGCAGTGGCTGTTAAGCTCACTCTTGTGGAGGAAAGGCAAATAGCATG
GAAGCGGCGCTTGTGTGGCCAAAGACAAGGAAATATGGAGATGATTGAAG
GGTAAAGGAGGAGAAAAGGAGAGTGAACTCGACGGGGATGAAACGCATCT
GATACTGTAGGACAATACACCTCTCGAGCTCTTGTATTCCCTGACTGTTC
TATGGTAATATCCCGTATTGAAGAATCCAAAGGTAGGGGGGGGGGATCTT
TATTTTTTAGGAGGGGTTGTCGGCCGGGCAGCCACACTAATACTATAATA
CTATACTTCTATAGTACTATTAATATTGTTGCAATCCGGACCATATTGAT
TGAATTGAACCTGGTAAACTCGGAACGGCATAATCTGAGATGGGCTGGCC
AATCAGGCACGGGCACAGGGAGATCGAAAAACGCCTTCTAACTCCTTCGC
GACAGACAAAAGCCGATTTTGTTACCACCCCTTATCTTTGGATTACTCAA
TGTAATAGTACTGTCGGGTAGTCGTATATAGGTGCCTAGAACCGTTATAA
GCACTCCCGCGTTCTTCAGATAGATCTTGTAAAGCGCAATTCTCTGAAGT
CGAAACAATTATATAATTTACCCGTGCGGGCATGGCACTGAGGAACGTTC
ATCGAACTCGAACGGTATATGCGACCAACCAAATGTCGTGTTTTTCCAAC
ACAGAGAACGGCACCGCAAGTAACATCGTGCTCAATGGCAAACCACCACG
AGATCGTACGGAATCGATTAACCAGTTCAGTACACTGTGGCAGCGTTTTC
GGGCGGTGAGACGGTTTCCCGTCGGTTGCCGAGAACGGTACGCCCGCCCA
GCCACGAACACGTGGTATTTCAGCGGATAGCTGACGAAAAACGGGCTGGC
TGCGGTATAGAGCTAGGGCTCCAAGTTCCTGCGCGCAGTTTATCTTGAAA
AGCTCGCTGGCTATTTGCGTCGATCGAAAGCGCTCTGCCCCTGCCATTCG
CTCGACACACCGCATGCTGCAGAGCTGGGCGGACTACATGGAAGCGATGG
ACGTGTCCAGGGAAGACCTCGAAGAGGCGAGCAGACTCGACCAGCGTGCA
GTTCGCTTTCATCCGGAGGACATCGTTGCGTCGCTCGAGGACTTGGACGT
CGATCACGTTGGCGCCTTGGCAGTGAGTCTGCAGTTTCGCCAGGATTACC
CCTAAAATATGTGTAGTGTGGTGTGGTGTGTTTTGCAGTGGTCAAGACTT
GAATTGAGGCAGCTACATAATCATCTCGATATAGGGCGCGCGCCCGCCGT
GCTATCAACAGTGACAAAGGACGCAGTACTGCTTGCAATGCAAGGGCCAG
TTAGAAAGAAAAGGCCACGAAGTGTTAGGCGGTTAACGTACACAGCCAAA
TTTTCCCGTGGCGATATAGCCTATAGTCCGTCCCCGCGTAAGAACAAAAC
ACAGGCTGTTGCCGCGCAACCTCGGCCGATTGCCCTGATTGCCCTCTGCG
ATAGGTTGGCTTGATTGTCACGACGTACACAGCTTCGAAGTTCAATGTGA
TATACGGCTGGCTTGCAGACTGATACCGGCGTATATCGTGCACAATGGGC
AGGCCACTGCGGCTCACCTCTGGAGCAATATATCCCCTTGGCTACGGGAA
GATGTCGACTTCATCACCAGCGTGGATCAGGTGTTCGAAACCGCGCCTTA
CGTAGGGTTACACATCCGGCGAGGAGATAAAATCTCGAATCATGAGGCGG
AGGCCATCGGCATAGAGGTAAGGGATACTTCTTCTGTAGACAACGAGTGG
CGGCAGAACCCGGAGACCCGAATAGAACGACCAGTGTTTTGAACGTGACT
ACTTCGAACCTTGGTTCACACGGGATGCATGACAATTCGCGCTCTTTTGG
TATACTTGTACTAGTCAAAGGTTTACGCTATCTCTCACCGCCATAAAATA
TTTGTCGGAATGCGGGTGGTATCGTGCTTGTCCTTTTTACCGCTTTGTTT
TGCGACTCTCCACGTTTCCCCGCGGAGCGAAGCGAGTTACGAGCTACTTT
CGAAGTGGTAGAATCGACCTTGTATCCCATGGCGCACTGCACCTAAATCC
CACAGCACCGAAAATAATAGCGTGTGCTAAACGAGCGCAATCTGCGCACT
ATTCACCATTAACCTGAATCATATCATCCCTCTTGGCCTTTAAAGTATCC
CAGCAGCGCTTGCCTCCACTGACGGTCCTTGTTCACGATTGGAAGCCCCG
AAATTGTTGCCCCCCACACACCGCTTTGCCGACAGGAGTATTTGGAGGCA
GCGTTGGGATACCTCGAGGAGTACCCTGATCGAACCTCCCCGGACGAAAT
CAAAGGCATCTGGATCGCGTCGGATGACAGCACCGTCGTAGACAAGGTCC
GAGGAATTGCCCATGATTACTTCCCTAACGTGGCCAGCGAGGCCATTGTT
TATGTCTCCAATGGAGTGCCCGGGGGCCCGGAGGGACAGGGAACAGAGAT
GGAAACTCGCACCAACAAGCAGGTATCGATTACACTGCTAGTAAACCCCT
TAACAGACAGACGTGCGTCGGATGGGGTTAGGGTCAGGGTTAGGGTTGCC
CTTTTGGGGCCGAGCTTGCTTTGCAGGGGGCCATCTGCCCGCACCGTATT
TTATATAGAACAGGTACAGTGCCCGAACGGTGGATACTTGTAGAATCTCG
CCGTAGTGGCCGTGGAAACGTGATGACAAACAACCCTGCCACGGCTCAGC
TCTCACGCACTGTGCTGGTGGTGGTGTACTATTGGGTGCACCCGTCACAA
AGATAAACACTAGTATACCGTACACAGTACCCTCAGTGACGGCATTATTC
GATTTCAGTATACAGTATACGGCACCCTCAGTGACGGTATTATTCGATAG
AGTATACTGGTACAGTACACGGTACGCTCAGTGGCGGTATTATTAGATAC
ACTATACAGTATACGGTACCCTCAGTGACGGTAATATTCGGCTAAAAAAA
CGATTCAGTCCGAAAAGTCCGAAAAGGGTTAGTCCCTTTTCGGAGCGAGT
CCGTTTTTGCGGCGAATGTGGAGCCTACTTGTACTGACTACAGACTAATG
ACTACTGACTGACTATTAATAGTGGCTAATGACTAGTGACTGGCTATTTT
AGGGGTAATGCGGTGACTATTAATAGTGACTAATGGCTCCTGACTATATG
ACTACCAGTACTGACTAGTGACTAGTGACTAGGGGCAATGCGGTGACGGC
TACACCCACGAGCGCACCGTGTACAACATGCGAGCTAAGCGTGGCACGAG
GCTGGCCGTTTTTCTACCGCCACTACATACAAGGGCGTAGGAAGAGTAGC
CGTGGTTGGGTATCATATCGTATCATGTAGTATATTTTTGTAAAATATAG
TGTAATATAGTGAAATATAGTGTAATATAGTACGAAGTATAATATAGTAT
AATATAGTATTGTAGCTGATCGACGCGAACTAAAGTGCGTGCAGGTGGCA
CCTTAATCCTAAAACGGACCCAGTCTCAAAGGGCTATTAGTATAATAGTA
TCGTTTTATCCTTCCTGTGGGATACGGATTAACCTCATGGTAATCGTTGA
CACCGGACCATATACATATACATAGACATATATACATACTTCATATACGT
CCGGGGGATCAAATCGATCTCGCCGGGAAGGTAGATATTTCAGCCCTGAC
CTCTCTCTCACCCTCGTCACCGCTCTCTTTCACCTTCCCACGCAATAGGG
TTACGGGGCATTTGCCTACATGCTCGCAGATTTTAAGCGGCTCGTCAAGG
CCGAGGTTTTTATCGGCACGTTCAGCTCCAATGTGGGAAGGCTGATGGTG
GTGCTACGGGAGGCGGATGGTACGAAGCCAAGGGAATCAGCCATCAGTGT
CGACACTCCAAACTGGTGGCCGGGAAGAGATTGACCTGCACGAGCCAGTT
CTGGTGTCTGGCTATGCGATTCAGGACTGCGCGCGCGTTATCTGGTGATT
TTCCTCGCAAGTTATTTTCCATCCACCCTCCTCGGAGATAGGAGGAAACG
ACCTAAATCGAGTTGAGGACGGGGTAAAAGGTGAACGCGCGCTATTGTTA
TTGGGCAGGATGGATCGCACCCCAAGCGGATTCACACATATCAAACCCTC
TGCTTCAAAAGCGCACGCATCACGGGGCATCCGAGTAGCTTAGTTACGAT
GAAATCGCCCGGGTTGGTTCACACAATGGACGGAGGGACTTTTCCGTCGT
GGAGTAGGGCTTGCGGCGGCCATTTTTTGTTTCATTTTATTAATTCACGT
CATTTTTTGTCAAACCGGGTTGCATGCAACATTCAACATTCGTTGTCGGT
AGATTGTAGCTTGCGAAGACCGCCCACGAGTGAGTCACAAGCGTAACGCA
TGTGCACGGTTCATGCTATATGATCAGATCCGATTGTTTTACGCTTATTT
TTTTTAGGGAGGAAACACACTCCTCCAGGAAGGTAAAAGCAGCCTCGCTG
TGTTTGGTTCCCGGTTGGCGGGCATGCAGGGGCCGGCCATGCAATGTTCA
GATGATGTGTTGTTGGGAGGACCGGGCTCCTCGAAGAAAGGTAGTCCGTC
AAGGGTATCGCAGGAGACGTGCGTCGTTGTGTCGGAGTTGCTTCTCGGTG
CCCTTGTGGCATGTGTGGTGGACGTTCGATTGTTGTTTGTACTCGATTTT
CGTTTAGTCTGGTTATGTACACACAGACGGCGCAAAACCAGTACCGTTTT
TGCACAAGGGGGTTGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11285:1182..7098-

>mRNA_S-dermatodea_contig11285.819.1 ID=mRNA_S-dermatodea_contig11285.819.1|Name=mRNA_S-dermatodea_contig11285.819.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2556bp|location=Sequence derived from alignment at S-dermatodea_contig11285:1182..7098- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCACCTGCTTTCTTTCGTGCGCTGGAAGCGCGGCCGACCGCGGACAA
GCCAGGCGCAGCAGGCGTGAAGCCGTGCGCGAGACGTTCCTCCCGCAGAA
AGGAAGTTTTTCCCCAATCCTCTTTCCGCGGCCGCAGAATCGGCAAGGCT
GCGCTCCTCCAAGCGCTAGGGTGCAGCATACTGAGGGGAGGAGTGATGGC
GGAAAGTGCATCGTCACATCCTACCCAGAGCCTCAAGTTTGAGACCACGG
CTTTCTCCCCTGAGTGGCAACACGAGTTTGCTGCTGGAGATATTGGCTGT
GAAGAAGCTCGAGGCAGTTTCGTGTGGCGTCCTCAAGGGTTTGGCTCGAA
CATTAACAATGGCACCTGCTTTCTTTCGTGCGCTGGAAGCGCGGCCGACC
GCGGACAAGCCAGGCGCAGCAGGCGTGAAGCCGTGCGCGAGACGTTCCTC
CCGCAGAAAGGAAGTTTTTCCCCAATCCTCTTTCCGCGGCCGCAGAATCG
GCAAGGCTGCGCTCCTCCAAGCGCTAGGGTGCAGCATACTGAGGGGAGGA
GTGATGGCGGAAAGTGCATCGTCACATCCTACCCAGAGCCTCAAGTTTGA
GACCACGGCTTTCTCCCCTGAGTGGCAACACGAGTTTGCTGCTGGAGATA
TTGGCTGTGAAGAAGCTCGAGGCAGTTTCGTGTGGCGTCCTCAAGGGTTT
GGCTCGAACATTAACAACCTGTTGAATGCATGGGTGCACAGCATTGCTGT
GGAGAACTGGAGCGACATGGCTGTCATCATCGACTCAGACCAAATGACGC
ACATCAAGTGTGCTGAGGAAAGTGGCGGGCAGGCTTCGAGCGGATGGGGT
TGCTTATTCAGCCCTATGGCGCACTTGTGCACGTTCGAGTCGGGCGAGAC
CTGTTGAATGCATGGGTGCACAGCATTGCTGTGGAGAACTGGAGCGACAT
GGCTGTCATCATCGACTCAGACCAAATGACGCACATCAAGTGTGCTGAGG
AAAGTGGCGGGCAGGCTTCGAGCGGATGGGGTTGCTTATTCAGCCCTATG
GCGCACTTGTGCACGTTCGAGTCGGGCGAGAGCTGGGCGGACTACATGGA
AGCGATGGACGTGTCCAGGGAAGACCTCGAAGAGGCGAGCAGACTCGACC
AGCGTGCAGTTCGCTTTCATCCGGAGGACATCGTTGCGTCGCTCGAGGAC
TTGGACGTCGATCACGTTGGCGCCTTGGCAAGCTGGGCGGACTACATGGA
AGCGATGGACGTGTCCAGGGAAGACCTCGAAGAGGCGAGCAGACTCGACC
AGCGTGCAGTTCGCTTTCATCCGGAGGACATCGTTGCGTCGCTCGAGGAC
TTGGACGTCGATCACGTTGGCGCCTTGGCAGCCACTGCGGCTCACCTCTG
GAGCAATATATCCCCTTGGCTACGGGAAGATGTCGACTTCATCACCAGCG
TGGATCAGGTGTTCGAAACCGCGCCTTACGTAGGGTTACACATCCGGCGA
GGAGATAAAATCTCGAATCATGAGGCGGAGGCCATCGGCATAGAGGCCAC
TGCGGCTCACCTCTGGAGCAATATATCCCCTTGGCTACGGGAAGATGTCG
ACTTCATCACCAGCGTGGATCAGGTGTTCGAAACCGCGCCTTACGTAGGG
TTACACATCCGGCGAGGAGATAAAATCTCGAATCATGAGGCGGAGGCCAT
CGGCATAGAGGAGTATTTGGAGGCAGCGTTGGGATACCTCGAGGAGTACC
CTGATCGAACCTCCCCGGACGAAATCAAAGGCATCTGGATCGCGTCGGAT
GACAGCACCGTCGTAGACAAGGTCCGAGGAATTGCCCATGATTACTTCCC
TAACGTGGCCAGCGAGGCCATTGTTTATGTCTCCAATGGAGTGCCCGGGG
GCCCGGAGGGACAGGGAACAGAGATGGAAACTCGCACCAACAAGCAGGAG
TATTTGGAGGCAGCGTTGGGATACCTCGAGGAGTACCCTGATCGAACCTC
CCCGGACGAAATCAAAGGCATCTGGATCGCGTCGGATGACAGCACCGTCG
TAGACAAGGTCCGAGGAATTGCCCATGATTACTTCCCTAACGTGGCCAGC
GAGGCCATTGTTTATGTCTCCAATGGAGTGCCCGGGGGCCCGGAGGGACA
GGGAACAGAGATGGAAACTCGCACCAACAAGCAGGGTTACGGGGCATTTG
CCTACATGCTCGCAGATTTTAAGCGGCTCGTCAAGGCCGAGGTTTTTATC
GGCACGTTCAGCTCCAATGTGGGAAGGCTGATGGTGGTGCTACGGGAGGC
GGATGGTACGAAGCCAAGGGAATCAGCCATCAGTGTCGACACTCCAAACT
GGTGGCCGGGAAGAGATTGAGGTTACGGGGCATTTGCCTACATGCTCGCA
GATTTTAAGCGGCTCGTCAAGGCCGAGGTTTTTATCGGCACGTTCAGCTC
CAATGTGGGAAGGCTGATGGTGGTGCTACGGGAGGCGGATGGTACGAAGC
CAAGGGAATCAGCCATCAGTGTCGACACTCCAAACTGGTGGCCGGGAAGA
GATTGA
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