mRNA_S-dermatodea_contig11277.815.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11277.815.1
Unique NamemRNA_S-dermatodea_contig11277.815.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11277.815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11277contigS-dermatodea_contig11277:6348..6836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11277.815.1prot_S-dermatodea_contig11277.815.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11277 6355..6657 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924194.4288406-UTR-S-dermatodea_contig11277:6347..63541622924194.4288406-UTR-S-dermatodea_contig11277:6347..6354Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11277 6348..6354 +
1694079083.3658319-UTR-S-dermatodea_contig11277:6347..63541694079083.3658319-UTR-S-dermatodea_contig11277:6347..6354Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11277 6348..6354 +
1622924194.4627907-UTR-S-dermatodea_contig11277:6657..68361622924194.4627907-UTR-S-dermatodea_contig11277:6657..6836Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11277 6658..6836 +
1694079083.3887286-UTR-S-dermatodea_contig11277:6657..68361694079083.3887286-UTR-S-dermatodea_contig11277:6657..6836Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11277 6658..6836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924194.4407482-CDS-S-dermatodea_contig11277:6354..66571622924194.4407482-CDS-S-dermatodea_contig11277:6354..6657Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11277 6355..6657 +
1694079083.3760407-CDS-S-dermatodea_contig11277:6354..66571694079083.3760407-CDS-S-dermatodea_contig11277:6354..6657Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11277 6355..6657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11277.815.1

>prot_S-dermatodea_contig11277.815.1 ID=prot_S-dermatodea_contig11277.815.1|Name=mRNA_S-dermatodea_contig11277.815.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
MYLPSLHEYRTRSNPNILVDPEPGMLGTGSSEMGWPILLVGASTANGKKM
RYNSCKTVKKKSISLPYRSYRSNTQSLLHRTPDSHGNALHRKSRSKQQRA
*
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mRNA from alignment at S-dermatodea_contig11277:6348..6836+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11277.815.1 ID=mRNA_S-dermatodea_contig11277.815.1|Name=mRNA_S-dermatodea_contig11277.815.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=489bp|location=Sequence derived from alignment at S-dermatodea_contig11277:6348..6836+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTACACCATGTATCTTCCATCACTACATGAATACCGTACCAGGAGCAACC
CGAACATATTGGTCGACCCTGAACCTGGTATGCTCGGAACGGGATCATCT
GAGATGGGCTGGCCAATACTACTTGTAGGCGCGAGCACAGCAAATGGGAA
AAAAATGCGTTACAACTCCTGCAAGACAGTAAAAAAAAAGTCGATTTCCT
TGCCCTACCGCTCCTACCGTTCGAATACTCAGTCATTACTCCACCGTACA
CCTGATTCGCATGGCAATGCGCTACACAGAAAATCACGCAGCAAGCAGCA
GAGGGCGTAGGCAGCGAGCAAACATCAAGCAACACCTTCCGGAGATCCGC
ATCGATCGGTAACATACCATCCACATGGACGCGACGCGCTGTCCGTACGA
AAAGCTAAACTTTGATCACAACGCGAGCTAAAGCAAACTAAGCGCCGCAC
GAACACAAACACGATAACTGTTGCGTACACACTTTGCGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11277:6348..6836+

>mRNA_S-dermatodea_contig11277.815.1 ID=mRNA_S-dermatodea_contig11277.815.1|Name=mRNA_S-dermatodea_contig11277.815.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig11277:6348..6836+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTATCTTCCATCACTACATGAATACCGTACCAGGAGCAACCCGAACAT
ATTGGTCGACCCTGAACCTGGTATGCTCGGAACGGGATCATCTGAGATGG
GCTGGCCAATACTACTTGTAGGCGCGAGCACAGCAAATGGGAAAAAAATG
CGTTACAACTCCTGCAAGACAGTAAAAAAAAAGTCGATTTCCTTGCCCTA
CCGCTCCTACCGTTCGAATACTCAGTCATTACTCCACCGTACACCTGATT
CGCATGGCAATGCGCTACACAGAAAATCACGCAGCAAGCAGCAGAGGGCG
TAGATGTATCTTCCATCACTACATGAATACCGTACCAGGAGCAACCCGAA
CATATTGGTCGACCCTGAACCTGGTATGCTCGGAACGGGATCATCTGAGA
TGGGCTGGCCAATACTACTTGTAGGCGCGAGCACAGCAAATGGGAAAAAA
ATGCGTTACAACTCCTGCAAGACAGTAAAAAAAAAGTCGATTTCCTTGCC
CTACCGCTCCTACCGTTCGAATACTCAGTCATTACTCCACCGTACACCTG
ATTCGCATGGCAATGCGCTACACAGAAAATCACGCAGCAAGCAGCAGAGG
GCGTAG
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