mRNA_S-dermatodea_contig11266.811.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11266.811.1
Unique NamemRNA_S-dermatodea_contig11266.811.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11266.811.1 vs. uniprot
Match: A0A6H5JP31_9PHAE (Peptidase A1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JP31_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.280e-32
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 1
Query:   10 IAPQEYSLDGDEYIINAGNSKVCILAIMGMDIPEPAGPLWILGDVFMRKYYTVFDYGNAQIGLAAA 207
            I  +EY+L+GDEY+I+AGN KVCILAIMGMDIPEP GPLWILGDVFMRKYYTVFDYGNAQIGLA +
Sbjct:  344 IGGKEYTLEGDEYVISAGNDKVCILAIMGMDIPEPMGPLWILGDVFMRKYYTVFDYGNAQIGLATS 409          
BLAST of mRNA_S-dermatodea_contig11266.811.1 vs. uniprot
Match: A0A3B4WHQ6_SERLL (Lysosomal aspartic protease-like n=2 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=A0A3B4WHQ6_SERLL)

HSP 1 Score: 93.2 bits (230), Expect = 7.520e-23
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 1
Query:   10 IAPQEYSLDGDEYI--INAGNSKVCILAIMGMDIPEPAGPLWILGDVFMRKYYTVFDYGNAQIGLAAA 207
            IA +E++L+G +Y+  ++AG    C+L IMG+D+P P GPLWILGDVF+RKYYT FDYGN ++G A A
Sbjct:   60 IAGKEFALEGSDYVLSVSAGGQTECLLGIMGIDVPAPRGPLWILGDVFLRKYYTKFDYGNNRLGFALA 127          
BLAST of mRNA_S-dermatodea_contig11266.811.1 vs. uniprot
Match: A0A1X2HPW8_SYNRA (Endopeptidase n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HPW8_SYNRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.240e-20
Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    1 CIRIAPQEYSLDGDEYIINAGNSKVCILAIMGMDIPEPAGPLWILGDVFMRKYYTVFDYGNAQIGLAAA 207
            C+  A +++ L G++YI+N  N   CI   MGMDIPEPAGPLWI+GDVF+RK+Y+V+D GN ++GLA A
Sbjct:  334 CLTFAGKDFCLSGEDYILNVQNQ--CISGFMGMDIPEPAGPLWIVGDVFLRKFYSVYDLGNDRVGLAKA 400          
BLAST of mRNA_S-dermatodea_contig11266.811.1 vs. uniprot
Match: A0A1X2IZ32_9FUNG (Endopeptidase n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IZ32_9FUNG)

HSP 1 Score: 92.4 bits (228), Expect = 1.680e-20
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    1 CIRIAPQEYSLDGDEYIINAGNSKVCILAIMGMDIPEPAGPLWILGDVFMRKYYTVFDYGNAQIGLAAA 207
            C   A +++ LDG +YI+N  N   CI   MGMDIP PAGP+WI+GDVF+RKYY+V+D GN ++GLA A
Sbjct:  332 CFMFAEKDFCLDGKDYILNVQNQ--CISGFMGMDIPAPAGPIWIIGDVFLRKYYSVYDLGNDRVGLAKA 398          
BLAST of mRNA_S-dermatodea_contig11266.811.1 vs. uniprot
Match: A0A4Q3AI98_9BACT (Peptidase A1 domain-containing protein n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q3AI98_9BACT)

HSP 1 Score: 91.3 bits (225), Expect = 2.510e-20
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 1
Query:   25 YSLDGDEYIINAGNSKVCILAIMGMDIPEPAGPLWILGDVFMRKYYTVFDYGNAQIGLAAA 207
            Y+L   +Y+I  GN  +C+L IMG+D+P P GPLWILGDVFMRKYYTVFDYGN ++G A A
Sbjct:  277 YTLTPQDYLIPDGN--LCLLGIMGLDVPRPTGPLWILGDVFMRKYYTVFDYGNKRVGFAPA 335          
BLAST of mRNA_S-dermatodea_contig11266.811.1 vs. uniprot
Match: A0A7S4J7Z2_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4J7Z2_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 2.680e-20
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1
Query:   10 IAPQEYSLDGDEYIINAGNSKVCILAIMGMDIPEPAGPLWILGDVFMRKYYTVFDYGNAQIGLAAA 207
            I  ++++L+G EY+++   S  C+L I G+D+P P GPLWILGDVF+RKYYTVFDYGN QIG A A
Sbjct:  278 IGGKDFTLEGSEYVLSV--SGECLLGITGIDVPAPRGPLWILGDVFLRKYYTVFDYGNNQIGFATA 341          
BLAST of mRNA_S-dermatodea_contig11266.811.1 vs. uniprot
Match: A0A7S2TCX4_PROMC (Hypothetical protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2TCX4_PROMC)

HSP 1 Score: 85.5 bits (210), Expect = 5.030e-20
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 1
Query:   19 QEYSLDGDEYIINAGNSKVCILAIMGMDIPEPAGPLWILGDVFMRKYYTVFDYGNAQIGLAAAA 210
            +EY+LD  + ++ A  ++ CIL + G+D+P PAGPLWILGDVFMRKYY  FD+G  +IG+A AA
Sbjct:   41 KEYTLDSTDLVLQASGNQ-CILGLTGIDVPAPAGPLWILGDVFMRKYYVQFDWGQKRIGVATAA 103          
BLAST of mRNA_S-dermatodea_contig11266.811.1 vs. uniprot
Match: A0A7S3EUJ7_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EUJ7_9EUKA)

HSP 1 Score: 90.5 bits (223), Expect = 6.530e-20
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   10 IAPQEYSLDGDEYIINAGNSKV--CILAIMGMDIPEPAGPLWILGDVFMRKYYTVFDYGNAQIGLAAA 207
            I  +E+ L+G +Y++    S V  C+L + G+D+P P GPLWILGDVF+RKYYTVFDYGN Q+G A A
Sbjct:  297 IGGKEFELEGSDYVLKITQSGVTECLLGLTGLDVPAPRGPLWILGDVFLRKYYTVFDYGNNQLGFATA 364          
BLAST of mRNA_S-dermatodea_contig11266.811.1 vs. uniprot
Match: A0A1C7NAJ0_9FUNG (Rhizopuspepsin n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NAJ0_9FUNG)

HSP 1 Score: 90.5 bits (223), Expect = 8.010e-20
Identity = 36/69 (52.17%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 CIRIAPQEYSLDGDEYIINAGNSKVCILAIMGMDIPEPAGPLWILGDVFMRKYYTVFDYGNAQIGLAAA 207
            C+  + +++ L  ++Y++N  N   CI   MGMDIPEPAGPLWI+GDVF+RKYY+++D GN ++GLA A
Sbjct:  323 CLTFSGKDFCLSAEDYVLNVQNQ--CISGFMGMDIPEPAGPLWIIGDVFLRKYYSIYDLGNDRVGLAKA 389          
BLAST of mRNA_S-dermatodea_contig11266.811.1 vs. uniprot
Match: A0A7S4BBF8_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BBF8_CHRCT)

HSP 1 Score: 90.5 bits (223), Expect = 9.920e-20
Identity = 38/69 (55.07%), Postives = 54/69 (78.26%), Query Frame = 1
Query:   10 IAPQEYSLDGDEYIINAGNSKV--CILAIMGMDIPEPAGPLWILGDVFMRKYYTVFDYGNAQIGLAAAA 210
            IA + ++L G++YI+    + V  C+L + G+D+PEP GPLWILGDVF+RKYYT+FDYGN+++G A AA
Sbjct:  354 IAGETFNLTGEDYILQITTAGVTECLLGMEGLDVPEPRGPLWILGDVFLRKYYTLFDYGNSRLGFALAA 422          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11266.811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JP31_9PHAE2.280e-3283.33Peptidase A1 domain-containing protein n=2 Tax=Ect... [more]
A0A3B4WHQ6_SERLL7.520e-2357.35Lysosomal aspartic protease-like n=2 Tax=Seriola l... [more]
A0A1X2HPW8_SYNRA1.240e-2056.52Endopeptidase n=1 Tax=Syncephalastrum racemosum Ta... [more]
A0A1X2IZ32_9FUNG1.680e-2056.52Endopeptidase n=1 Tax=Absidia repens TaxID=90262 R... [more]
A0A4Q3AI98_9BACT2.510e-2063.93Peptidase A1 domain-containing protein n=1 Tax=Ver... [more]
A0A7S4J7Z2_9EUKA2.680e-2059.09Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S2TCX4_PROMC5.030e-2056.25Hypothetical protein n=1 Tax=Prorocentrum micans T... [more]
A0A7S3EUJ7_9EUKA6.530e-2055.88Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A1C7NAJ0_9FUNG8.010e-2052.17Rhizopuspepsin n=1 Tax=Choanephora cucurbitarum Ta... [more]
A0A7S4BBF8_CHRCT9.920e-2055.07Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11266contigS-dermatodea_contig11266:398..610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue9.5e-27
Seed eggNOG ortholog2880.D7FLX5
Preferred nameNAPSA
KEGG koko:K01379,ko:K01381,ko:K01382,ko:K06883
KEGG Pathwayko04071,ko04138,ko04140,ko04142,ko04210,ko04915,ko05152,map04071,map04138,map04140,map04142,map04210,map04915,map05152
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004190,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0016787,GO:0019538,GO:0030163,GO:0043170,GO:0044238,GO:0070001,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG1339@1,KOG1339@2759
EC3.4.23.25,3.4.23.34,3.4.23.5
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924194.2336042-CDS-S-dermatodea_contig11266:397..6101622924194.2336042-CDS-S-dermatodea_contig11266:397..610Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11266 398..610 +
1694079083.2397454-CDS-S-dermatodea_contig11266:397..6101694079083.2397454-CDS-S-dermatodea_contig11266:397..610Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11266 398..610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11266.811.1prot_S-dermatodea_contig11266.811.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11266 398..610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11266.811.1

>prot_S-dermatodea_contig11266.811.1 ID=prot_S-dermatodea_contig11266.811.1|Name=mRNA_S-dermatodea_contig11266.811.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=71bp
CIRIAPQEYSLDGDEYIINAGNSKVCILAIMGMDIPEPAGPLWILGDVFM
RKYYTVFDYGNAQIGLAAAA*
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mRNA from alignment at S-dermatodea_contig11266:398..610+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11266.811.1 ID=mRNA_S-dermatodea_contig11266.811.1|Name=mRNA_S-dermatodea_contig11266.811.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at S-dermatodea_contig11266:398..610+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCATACGAATCGCCCCCCAGGAATACTCGCTCGACGGCGACGAGTACAT TATCAACGCTGGAAACAGCAAGGTGTGCATCTTGGCCATCATGGGCATGG ACATCCCGGAGCCCGCGGGGCCTCTCTGGATCCTTGGCGACGTGTTCATG AGGAAGTACTACACCGTCTTCGACTACGGAAACGCTCAGATCGGGCTCGC CGCCGCGGCCTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11266:398..610+

>mRNA_S-dermatodea_contig11266.811.1 ID=mRNA_S-dermatodea_contig11266.811.1|Name=mRNA_S-dermatodea_contig11266.811.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at S-dermatodea_contig11266:398..610+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCATACGAATCGCCCCCCAGGAATACTCGCTCGACGGCGACGAGTACAT
TATCAACGCTGGAAACAGCAAGGTGTGCATCTTGGCCATCATGGGCATGG
ACATCCCGGAGCCCGCGGGGCCTCTCTGGATCCTTGGCGACGTGTTCATG
AGGAAGTACTACACCGTCTTCGACTACGGAAACGCTCAGATCGGGCTCGC
CGCCGCGGCCTAATGCATACGAATCGCCCCCCAGGAATACTCGCTCGACG
GCGACGAGTACATTATCAACGCTGGAAACAGCAAGGTGTGCATCTTGGCC
ATCATGGGCATGGACATCCCGGAGCCCGCGGGGCCTCTCTGGATCCTTGG
CGACGTGTTCATGAGGAAGTACTACACCGTCTTCGACTACGGAAACGCTC
AGATCGGGCTCGCCGCCGCGGCCTAA
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