mRNA_S-dermatodea_contig11260.810.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11260.810.1
Unique NamemRNA_S-dermatodea_contig11260.810.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11260.810.1 vs. uniprot
Match: D7G334_ECTSI (Metallophos domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G334_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 4.630e-71
Identity = 96/120 (80.00%), Postives = 108/120 (90.00%), Query Frame = 1 
Query:    1 RFGADYYSFWWGGVRGLVLNTNLWSIPNANPERRLAQERWLDQELAVAQLNAHHLFVIGHHPWFLKDPYEEEHPIWTPIPKAIRLKWLAKMSHCKVKFIFSGHCHRNYEARIRHPVTLKT 360
            RFGADYYSFW GGVRGLVLNT+LW+   ANPERRLAQERWLDQEL VA+LNAHHL V+GHHPWFL+DPYEEEH IWTPIP+  RL+WLAKM HCKVKFIFSGHCHRNYEAR++ P+ ++T
Sbjct:   43 RFGADYYSFWCGGVRGLVLNTHLWASRTANPERRLAQERWLDQELEVAKLNAHHLIVVGHHPWFLQDPYEEEHRIWTPIPRKTRLRWLAKMGHCKVKFIFSGHCHRNYEARVKRPIAVET 162
[Close]
BLAST of mRNA_S-dermatodea_contig11260.810.1 vs. uniprot
Match: A0A6H5KQR8_9PHAE (Metallophos domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR8_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 2.490e-70
Identity = 93/120 (77.50%), Postives = 108/120 (90.00%), Query Frame = 1 
Query:    1 RFGADYYSFWWGGVRGLVLNTNLWSIPNANPERRLAQERWLDQELAVAQLNAHHLFVIGHHPWFLKDPYEEEHPIWTPIPKAIRLKWLAKMSHCKVKFIFSGHCHRNYEARIRHPVTLKT 360
            RFGADYYSFW GG+RGLVL+T+LW+ P +NPERRLAQERWLDQEL VA+LNAHHL V+GHHPWFL+DP+EEEHP WTPIP+  RL+WLAKM HCKVKFIFSGHCHRNYEAR++ P+ + T
Sbjct:   96 RFGADYYSFWCGGMRGLVLSTHLWASPTSNPERRLAQERWLDQELEVAKLNAHHLIVVGHHPWFLQDPHEEEHPTWTPIPRKTRLRWLAKMGHCKVKFIFSGHCHRNYEARVKRPIAVDT 215
[Close]
BLAST of mRNA_S-dermatodea_contig11260.810.1 vs. uniprot
Match: A0A835ZFF7_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF7_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.690e-40
Identity = 66/106 (62.26%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:    4 FGADYYSFWWGGVRGLVLNTNLWSIPNANPERRLAQERWLDQELAVAQLNAHHLFVIGHHPWFLKDPYEEEHPIWTPIPKAIRLKWLAKMSHCKVKFIFSGHCHRN 321
            FGAD+YSFWWGGVRGLV+NT L + P  +  R   Q  WL+QEL +AQLNAHHL V GHHPWFL+   EE   + TP+P A+RLKWL+KM  CKVK +FSGH H N
Sbjct:  798 FGADFYSFWWGGVRGLVINTPLLAAPEGDSVRAQQQATWLEQELELAQLNAHHLMVFGHHPWFLRSVGEEPDAVVTPLPNAVRLKWLSKMGQCKVKAVFSGHLHYN 903
[Close]
BLAST of mRNA_S-dermatodea_contig11260.810.1 vs. uniprot
Match: UPI001BB17D98 (serine/threonine-protein phosphatase CPPED1-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB17D98)

HSP 1 Score: 91.7 bits (226), Expect = 7.000e-20
Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:    1 RFGADYYSFWWGGVRGLVLNTNLWSIPNANPERRLAQERWLDQEL-AVAQLNAHHLFVIGHHPWFLKDPYEEEHPIWTPIPKAIRLKWLAKMSHCKVKFIFSGHCHRN 321
            RFG DYY FW GGVR LVLNT ++   + + E R   + WL QEL A+      H  V  H  WFL++P EE+  ++  I K  RLK L K +   VK +FSGH H+N
Sbjct:  135 RFGDDYYGFWAGGVRFLVLNTQMYHDDSKSKEIRKQHDDWLLQELEAIKTSGCKHAVVFQHIAWFLQEPDEEK--VYFNIEKEFRLKMLEKFNDAGVKVVFSGHYHQN 240
[Close]
BLAST of mRNA_S-dermatodea_contig11260.810.1 vs. uniprot
Match: A0A2J7QYA9_9NEOP (Serine/threonine-protein phosphatase CPPED1 n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QYA9_9NEOP)

HSP 1 Score: 90.9 bits (224), Expect = 7.580e-20
Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 1 
Query:    4 FGADYYSFWWGGVRGLVLNTNLWSIPNANPERRLAQERWLDQELAVAQLNAHHLFVIGHHPWFLKDPYEEEHPIWTPIPKAIRLKWLAKMSHCKVKFIFSGHCHRNYEARIRH-PVTLKT 360
            FG D++SFW+GGVR L LN+  +   +  PE     E+WL++EL +A+     + V  H PWFL DP EE +  +  I   IR  WL K  +  V  +F+GH HRN     +  PVT+ T
Sbjct:  103 FGDDFFSFWYGGVRFLALNSQYFEDASKVPELAQKHEKWLNEELQLAKQEESRVIVFQHIPWFLSDPDEETN--YFSIKPNIRKVWLEKFKNSGVVHVFAGHLHRNAGGSYKGMPVTVTT 220
[Close]
BLAST of mRNA_S-dermatodea_contig11260.810.1 vs. uniprot
Match: A0A7M7RCY6_STRPU (Serine/threonine-protein phosphatase CPPED1 n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7RCY6_STRPU)

HSP 1 Score: 91.3 bits (225), Expect = 9.780e-20
Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:    1 RFGADYYSFWWGGVRGLVLNTNLWSIPNANPERRLAQERWLDQELAVAQLNA-HHLFVIGHHPWFLKDPYEEEHPIWTPIPKAIRLKWLAKMSHCKVKFIFSGHCHRN 321
            RFG DYYSFW GGVR LVLNT L+   +   E R   + WL +EL   + +   H  V  H PWFL+ P EE+  ++  I K  RL+ L K +   VK +FSGH H+N
Sbjct:  135 RFGDDYYSFWAGGVRFLVLNTQLYDNDSKAKEIRAQHDEWLLKELETMKTSGCKHAVVFQHIPWFLQKPDEEK--VYFNIEKEFRLQMLEKFNDAGVKVVFSGHQHQN 240
[Close]
BLAST of mRNA_S-dermatodea_contig11260.810.1 vs. uniprot
Match: A0A518G8T6_9BACT (Serine/threonine-protein phosphatase CPPED1 n=1 Tax=Aureliella helgolandensis TaxID=2527968 RepID=A0A518G8T6_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 1.750e-19
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 1 
Query:    1 RFGADYYSFWWGGVRGLVLNTNLWSIPNANPERRLAQERWLDQELAVAQL-NAHHLFVIGHHPWFLKDPYEEEHPIWTPIPKAIRLKWLAKMSHCKVKFIFSGHCHRNYEAR 333
             FG DY+SFW GGV  +VLN++L   P   P+R LAQ++WLDQ+L   Q+ +A H+ V  HHP FL+   E +   +  IP   RL  L +    +V+ IF+GH HRN   R
Sbjct:  157 NFGDDYFSFWVGGVFNVVLNSSLLKDPAGAPDRLLAQQKWLDQQLNNPQVQHAKHVLVFLHHPLFLEQADEPDQ--YFNIPLERRLPLLEQFKQAQVRAIFAGHYHRNAYGR 266
[Close]
BLAST of mRNA_S-dermatodea_contig11260.810.1 vs. uniprot
Match: A0A6L2Q6M9_COPFO (Serine/threonine-protein phosphatase CPPED1 n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2Q6M9_COPFO)

HSP 1 Score: 90.1 bits (222), Expect = 3.320e-19
Identity = 46/106 (43.40%), Postives = 61/106 (57.55%), Query Frame = 1 
Query:    4 FGADYYSFWWGGVRGLVLNTNLWSIPNANPERRLAQERWLDQELAVAQLNAHHLFVIGHHPWFLKDPYEEEHPIWTPIPKAIRLKWLAKMSHCKVKFIFSGHCHRN 321
            FG DY+SFW GGVR LVLNT  +   +  PE     E+WL++EL  A+     + V  H PWFL DP EE +  +  I  +IR  WL K+ +  V  +F+GH H N
Sbjct:  156 FGDDYFSFWCGGVRFLVLNTQYFEDASEVPELAEKHEQWLNEELEFAKQAGSRVIVFQHIPWFLSDPDEEAN--YFSIEPSIRNVWLEKLKNSGVVHVFAGHLHLN 259
[Close]
BLAST of mRNA_S-dermatodea_contig11260.810.1 vs. uniprot
Match: A0A2W0BBQ6_9BACT (Metallophos domain-containing protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2W0BBQ6_9BACT)

HSP 1 Score: 86.7 bits (213), Expect = 4.760e-18
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:    1 RFGADYYSFWWGGVRGLVLNTNLWSIPNANPERRLAQERWLDQELAVAQLNA-HHLFVIGHHPWFLKDPYEEEHPIWTPIPKAIRLKWLAKMSHCKVKFIFSGHCHRN 321
             FG DYY+F WGGVRG+VL++NL + P + PE   AQE+WL  EL  A+      + V  H P+F++ P E +   +  IP  IR ++L       V  +FSGH HRN
Sbjct:  119 EFGRDYYAFDWGGVRGIVLDSNLIASPESVPEESQAQEKWLIAELERARSEGVKQILVFQHIPYFIERPDEPDQ--YFNIPTVIRRRYLQLFHRYGVSCVFSGHYHRN 224
[Close]
BLAST of mRNA_S-dermatodea_contig11260.810.1 vs. uniprot
Match: UPI000A2A4979 (serine/threonine-protein phosphatase CPPED1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A4979)

HSP 1 Score: 86.7 bits (213), Expect = 5.890e-18
Identity = 44/108 (40.74%), Postives = 66/108 (61.11%), Query Frame = 1 
Query:    1 RFGADYYSFWWGGVRGLVLNTNLWSIPNANPERRLAQERWLDQELAVAQ-LNAHHLFVIGHHPWFLKDPYEEEHPIWTPIPKAIRLKWLAKMSHCKVKFIFSGHCHRN 321
             FG DY++FW GGV  +V+N+  +   +   +    QE WLD++L +A+ +NA H+ V  H PWFLK+  EE+   +  I K +R K L K+    VK++F+GH HRN
Sbjct:  143 NFGDDYFTFWTGGVFFIVINSQYFKDGSQVEDITKQQEDWLDEQLQLAKTVNAKHIVVFQHIPWFLKNVDEEDD--YFNINKDVRKKMLQKLKKAGVKYVFAGHYHRN 248
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11260.810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G334_ECTSI4.630e-7180.00Metallophos domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KQR8_9PHAE2.490e-7077.50Metallophos domain-containing protein n=1 Tax=Ecto... [more]
A0A835ZFF7_9STRA2.690e-4062.26Kinase-like domain-containing protein n=1 Tax=Trib... [more]
UPI001BB17D987.000e-2045.37serine/threonine-protein phosphatase CPPED1-like n... [more]
A0A2J7QYA9_9NEOP7.580e-2040.00Serine/threonine-protein phosphatase CPPED1 n=2 Ta... [more]
A0A7M7RCY6_STRPU9.780e-2045.37Serine/threonine-protein phosphatase CPPED1 n=1 Ta... [more]
A0A518G8T6_9BACT1.750e-1943.75Serine/threonine-protein phosphatase CPPED1 n=1 Ta... [more]
A0A6L2Q6M9_COPFO3.320e-1943.40Serine/threonine-protein phosphatase CPPED1 n=1 Ta... [more]
A0A2W0BBQ6_9BACT4.760e-1842.59Metallophos domain-containing protein n=2 Tax=Acid... [more]
UPI000A2A49795.890e-1840.74serine/threonine-protein phosphatase CPPED1 n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11260contigS-dermatodea_contig11260:1105..7042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.2
Seed ortholog evalue3.3e-56
Seed eggNOG ortholog2880.D7G334
Preferred nameCPPED1
KEGG koko:K18914,ko:K21814,ko:K22390
GOsGO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005829,GO:0005886,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016192,GO:0030141,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0035578,GO:0036230,GO:0042119,GO:0042582,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0071944,GO:0097708,GO:0099503
EggNOG free text desc.acid phosphatase activity
EggNOG OGsCOG1409@1,KOG1378@2759
EC1.18.1.6,3.1.3.16
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMetallo-dependent phosphatase-like and protein kinase-like domains
Ec32 orthologEc-24_003050.1
Exons4
Model size360
Cds size360
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11260.810.1prot_S-dermatodea_contig11260.810.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11260 1105..7042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924194.1737058-CDS-S-dermatodea_contig11260:1104..11971622924194.1737058-CDS-S-dermatodea_contig11260:1104..1197Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11260 1105..1197 +
1694079083.199975-CDS-S-dermatodea_contig11260:1104..11971694079083.199975-CDS-S-dermatodea_contig11260:1104..1197Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11260 1105..1197 +
1622924194.1863124-CDS-S-dermatodea_contig11260:2903..29851622924194.1863124-CDS-S-dermatodea_contig11260:2903..2985Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11260 2904..2985 +
1694079083.212811-CDS-S-dermatodea_contig11260:2903..29851694079083.212811-CDS-S-dermatodea_contig11260:2903..2985Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11260 2904..2985 +
1622924194.1972172-CDS-S-dermatodea_contig11260:4680..47901622924194.1972172-CDS-S-dermatodea_contig11260:4680..4790Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11260 4681..4790 +
1694079083.2227645-CDS-S-dermatodea_contig11260:4680..47901694079083.2227645-CDS-S-dermatodea_contig11260:4680..4790Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11260 4681..4790 +
1622924194.205592-CDS-S-dermatodea_contig11260:6967..70421622924194.205592-CDS-S-dermatodea_contig11260:6967..7042Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11260 6968..7042 +
1694079083.2309165-CDS-S-dermatodea_contig11260:6967..70421694079083.2309165-CDS-S-dermatodea_contig11260:6967..7042Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11260 6968..7042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11260.810.1

>prot_S-dermatodea_contig11260.810.1 ID=prot_S-dermatodea_contig11260.810.1|Name=mRNA_S-dermatodea_contig11260.810.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=120bp
RFGADYYSFWWGGVRGLVLNTNLWSIPNANPERRLAQERWLDQELAVAQL
NAHHLFVIGHHPWFLKDPYEEEHPIWTPIPKAIRLKWLAKMSHCKVKFIF
SGHCHRNYEARIRHPVTLKT
back to top

mRNA from alignment at S-dermatodea_contig11260:1105..7042+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11260.810.1 ID=mRNA_S-dermatodea_contig11260.810.1|Name=mRNA_S-dermatodea_contig11260.810.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5938bp|location=Sequence derived from alignment at S-dermatodea_contig11260:1105..7042+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTTTGGCGCGGACTACTATTCCTTTTGGTGGGGTGGCGTTCGAGGCCT
GGTGCTCAACACTAACCTCTGGAGCATCCCCAACGCAAATCCGGTAAGGA
TGGCTCAAGGTTCTCGAGGCGCAGCAATTGTTTTTGTTTTCGGAAGGGAG
GTCGGTTTTAGAGCCGAACGCGCTGTGAAAACGTAAAATTGAGCAATTCG
AGCAAAATGTAAGTGTTATAAGAAGCGCATGTAGACACGGGGGTGTCCAG
GCGGACACCAGGGTCCGTGCGACGAAGTCCCGAGGCGTGGTTTGCTTGGT
CTTGGTAGCGAGGAGACTAGACTCGCTTTGGTTTTGGTTGGTCTTGTGGC
CGGTGGGTGGACCAAGCCTTGATGCTCCGTTCTTGATCCTGGTCCTGTCG
GCCGTTGATGGTCCGTCCGTTGGAAGCGGAAACCCGCAGGATGGATGTGT
ATAATGGGGACATGTATTGGTCTGAGAAACGTGCTCTCCACACGTAACGT
ACGTCTGTCATGTCTCTGGACATGAAGCTTTTTGTTCTGTGTAGGGGTGC
TGGATCTCAGTTGCTCTTGTGCCTTGATTGAGTATTGTCACCACGACCGG
GATCGGGAACCATTTTTACAATTGAAGATGATGGCGGGCGGGCGGGCCGG
TCGGTTGTATGTGTGATAGTGAATCGACATCAATCAATCAATGAAAACCA
AGGCTGTGTTCTGATAGATGATGACCTATGACGGGGGTACACAGCAGTAA
TCAGTATGATATTGTAGTAGGGAGGACCTAATGTATGCTCAATAGCGTAT
TCAAGCCTTGGGAGTTTTTTTTTATTTTTTATTTTTTATTTTTATTTTTT
CAGGCCGGAGGATGGCACATGTTGTAAACAGTACAATAGTAAGGCCAGAA
CGTACATATTTCTGGTATATTATGTTGGGCATATAATATATTTTGGCACG
TTTGGTCCTGATTACTATTATCTGATTAATTATAGCAACAATGACCGATT
GTGTGTATTGATTTTAGACAAGGATGCTGTCTGATGCCAAACAACTTGAT
GTTTGTTTTGAGCGATTTTTTTAATAGAAAGCGAAAACACAGCAGCGAGA
CGCACAGTAGTAGCTCGACTGCGTTCGACCTCCGTGTCGCGTTCCGTCGG
CATATCGTCCTGCCAACGCACACCTCACACGGGCGTAGCCGTGGCTATTA
TTATTAATACCCACTAGTAATGTGATAACAACAGCAACAACATCAATAAC
GAGCGCCATCCACGTGTTTTGCACCTGACTCGAAGAAACCGACGGCCACG
GCGTGTGCTGTGTTGTGTGCTATTCCTGTAAGTTTTTGAGGCCTATCAAT
AGGTAGGTGATGGGGGGGCTTGCAGGTGATGCGACAAACGGTTGATCGTT
GAGTGATTGGCTTGTTCGTTCGTTCATTGATTGGTTGATTTTCATATGCA
TACTTGGAAGTATACAGTACAGTACAGCATAGCCGATCGGATGAATTTGA
TTCCCCTCCGACTTGTGATGGAACGCGCGAAGAGTCGAGAAACGTTATGA
TAGTGATTCATAGTAAACGATAAAATATTATTGTATACTTCGTACATGCA
GTACAAAACGAGTGCTCATGATAGCATCGTGTGCTGTGATAGGAAGCGAA
CCCTGAAAATGCTCGGGATTTTTACCCACGCGGATATAACAAAATACAAG
AAGACAGCCAGCCCTCATGGCCACTTTTGCCTGAAACAGAGTTTTAAAGA
TGTGCGGTATGACGTGGCGCCTGTTCCTTGATCTCTCGGCGGGGCTTAGG
AACGGCGACTGGCGCAGGAGCGGTGGCTGGACCAAGAGCTGGCCGTCGCG
CAGCTGAACGCCCACCACCTCTTTGTGATCGGTGAGATAGACGCCGGACT
TGGCTTCCGGTCTCCTGTCTCTCTTACAGTAATTAATAATGAATAACGCT
TTGTCACGTTTTTTTTTCTAATAGCGATTTAGAGCGGAACAAACAAAATA
TCTGAAATTGAAACCCTATACAATTCTTGATGCCAAACGCACACCTCACG
GGCATAATAGCCGTGGCTACCTACTAGTTAATGTTAATATTCATAAAAAA
ATTGCGTGTCATTCGCCGTTGACAAGTCTGTGCTGCTATTGTTAATAGTG
TTTTTACCGAGATGTTTACTGTATCATGGTGTGTGTGTGTTTTGTTTTTT
GTTTTTTTCGCGTTTTTTTTCCGCAACTTTTCCGTGTACTGTACCTTCTT
CCCTTTGATTCGTTGACCTTGTGAGAGAAAGGCCACGGCTGTTTAATTAA
TAAAAAAAAACATACGATGAGTTAACATGGTACATACTGGACTCTAACAT
ATAATCAGTATGCAAACCTGGGCTACCCGATAGCTTTCGGCCGCAGTCAT
TGCCACAACCATTTGTGTATCTCGCGGGGACGGGGGTTCTGGCGACCCGT
ATCGCACAGCTCCTTACATTGTGTCTGTCCCCCCCTCTCTGATTTATACT
GTACGTGCTCCACGTTTGAGTACAAGTATTGTACCTCTATCGACGCGACT
GTTATTGATACAGTATATAATCAGGGCCGAATCTCTCCTGAATAGCGTAT
TTATGTCTTGTTTTTTTACGCGTTGGCCCCAACACCTTGTAATAAATTTT
TAGTTTTTTATTGATAAACTTTTCAGGCCGGAAGATGGATTGATTGCAGA
TGGGGTACAGTATGGATATTAGTATGGCTATAATAGGCTGGACGATATTG
AGTTATGATTGTATTAGTATTAGTATTAGTATTATGTTGGGCATTCTGTA
TCGCACGTTTGGTTCTGAAATCTCTGTACCTCCCTAATATAGTACGATGG
TCGAGGTTTTGAACCATTGAGCCACATAGATCCTTTTTTTCCCTTTTTTA
CGACGAGTCGGCGGGAGAGGGTAGTGCTTGGTGAAGGAACCCAATGCATT
CAACATAAAGGTGTTGTGGTATTTCGGCGGAGAAAAATAATTGTATAATG
GTAATAGTATAGTATAGTGTTAATAGTATAGTATAGTGTAGTATAATAGT
TAACAGACCGAAATGTTGAGTTGGTTTACAATACACCAATTGGCTCCGAC
CGAGCGTCTTGCTTTACTACTTTTTCGTTTTTTGTTTCGCTTAAATGTAT
CCGCTACGCTCCCCCCTAGTAACATAGTAAAACAAAACATAGTAACATAG
TATCGCAATACCATATTTTAGTAACATAGTAACGTCTAAATAGTAACATA
GTAACACAATAACACAATAACATAGTGAGATATTAATACAATGAGGCAAG
AAAGAGAGGGGTAGTGTGGATGGTCTATCGATCGATCCCTCATGGCCACG
GTCGGGCAAAGCTGTCCCGTCGCATACATGTGACCCACTTAAACGCGCAC
ACACACACATGCAGGCTTCGCCATACCCCCCCGATAATCCGATGGTGGAC
CCCTCGCGACCACAGGTGGGATACGTATAAGGCCATTCAGTCTTACGCGT
TAGCCACGCACACGTACTCAGACTTGACGGTATCCCCCTTGCCCTGACCT
TTGCCCTTACGCCCGCTGCATCGCAGGGCACCACCCATGGTTCCTGAAGG
ACCCTTACGAGGAAGAACACCCGATCTGGACGCCAATTCCCAAGGCGATC
AGACTTAAATGGCTGGCCAAGATGAGCCATTGCAAGGTGAACGGTTCGGT
TTGTTTTGTGTATAATCTGATGTATTGATTGATTGATTGATTGATTGATT
TGCACACGTATAGCCGATCGGCTTAGTCCGACCCGACTTGTGGTCAGACA
CGCAAAGAGTCAAGGAGAACATAACTAATCAGAAGTATGCATGCGCATTT
TGTTCTCTATTGTGTTCTGTAGAAGTGCACTTTTGGTTTCGGGGTTTCCA
TTGATTTTTGTTGCTTTTGCGCATCTGGTAACACGTGGGGTCGGAACCAG
CAAAAAATTGGCCGTACATGCGAAGAACAAAAATAAATATTGCGGAGAAA
GCAGAGCCTCTCGGGTCTGCCGTGTTCTTGTTGTGGGTGTTGGGAATGGA
GGTGGCCACAAGCGTTTGATCAGGCGTTTTACTTATTTTTTTGTCGCCTT
CTTTTTGTTCACCCTTTAGGTTTGCGCGAGTTTGTCGCACGCCCGCAGGA
CTTGTTTGCCTTTTCCCGTCGTGGAGATTCAGTAGTCTAAAACCCAACTT
TGAAAAGAGCATCGTCTAAATCGGTCGAAACAGCTTCTACAGTACGAGTA
GACTCAGAGAGCTATCCCGGCATAGTTTGTAACACAACCAATGAATACCC
AACTATTCCGACCATGTGTTTTTACCCAAACAGCAGCAAATCTCAGGAAA
ACAAAAAACACACGAGATACGGCCATACACAAGAGCATTCACCTTGAAAT
CTCGATCGTTCCAGCCTATTTTGATTTTTCTTGACTCTTCGCGTGTCTGA
CCACAAGTCGGGTCGGATTAAGCCGACCGGCTATACGTGTGCAAAAAAAA
AAAAAAATGAGATTTGTGGCAAATTTGGACCTGTTAACTACGGTCCCCGG
TAATATTACAAGATGCCGCAGCGGACTGACCCTTGAAGCGATGCACATGT
CCCATCTCGTGCATTTGGCCGTGGCGCCGGCGAGTGCTCGCTGTACTGAG
CGCTGTGTGCGAGCAAGCCTGCTCTGGAATCAGTGACGTCTCCCTTTCTC
CCATCCCGTCCCACATCGTTCCATCCTTTCCATACTATTATACTCCAAAT
TGTTTCCAGCTAGATATTATAGTAGCGCTGTCGTCTGTAGGTTTTGCGTT
TGCCAAGCAAGGCTCGGAAATTTCTCTACGTTTCGATGCTACAGCTGTTG
CAGCACCAAGCACGTTTCTTTTATTAGTGATTGTTTTCACTGGCATCCCG
TTCTTGTTCTATCTCCCTCGCGTTTAGTTTTTTTTTTTTTTTTTTTTTAA
TATTTTGTAGACTTACTTTTTCTAGGCCCCCCTTTTGGTTAAAAGGAATT
ATTCCATCTCCCTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTT
NNNNNNNNNNTGTTTTGTCGTTTGCTGTTTCTTTTATGTTTTTTTTTTTT
TCTTCCTTCTCCTTTTTTTTTCTTTCTCCCCCCCTTTTTTTTTTTTTTTT
TTTTTTTTGCACACATGTGGTAGACTTACTTTTCCGAGGCCCGCCTGTGG
GTCACAAGGAATCATCCCATCTCCCTTATCTTATATTATCTTATCTATAT
ATGTTCTCACCTTTGATGTTCATCGCGAATGCATTGGGTTCAGCACTTCC
GCAGCTCGTCGATTTCTCGCATTTTATTTACTCACGCTCTCGCGCTTTCC
GCGGCGGAGGTGGACAATATATATAAAAATTGTCTCTGCCGGGATTCGAA
CCCGGGTCCTCCGCCTAACTGCCCGTAGGTGCATCTGGAACAATAATGCT
GGCGAAATTAGTGGCATTTTAAAAGGTCATGTGACGCCAACACCGCCGTC
TACAAGTATCGGCGGGGGGGTCCTGTATATACCATAACCATGTAACATGA
TTATCCCGGTTCATAACCATGTAACATGATTATCCCGGTTCGTTTTTTCG
ATTTCTCCGCTGTCTCATTTGCCAGCGAGAATAATCGGCTACTTGTACCA
CTTGCCGATCGGTCGGTTACAACTGTCTGTGCTCTTATCCAACAATCGTG
ATGTAAAAAAATCAGTCAAATCCACCAATCACTCAATCAATCAATCAATG
TATTTTTGTCATTATCTTTCCTTGTGTTTCTCGCGTCTCCCGTTCGTCTT
TTGTCCCTTTATCCCCTCGCCTTTGTTTCTCGCCTCCTTGCACTGCTTGC
TGTGGCATCGCAGGTGAAGTTCATTTTCTCGGGCCACTGCCACCGCAACT
ACGAAGCGAGAATCAGACATCCGGTGACGCTCAAAACG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11260:1105..7042+

>mRNA_S-dermatodea_contig11260.810.1 ID=mRNA_S-dermatodea_contig11260.810.1|Name=mRNA_S-dermatodea_contig11260.810.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig11260:1105..7042+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTTTGGCGCGGACTACTATTCCTTTTGGTGGGGTGGCGTTCGAGGCCT
GGTGCTCAACACTAACCTCTGGAGCATCCCCAACGCAAATCCGAGGTTTG
GCGCGGACTACTATTCCTTTTGGTGGGGTGGCGTTCGAGGCCTGGTGCTC
AACACTAACCTCTGGAGCATCCCCAACGCAAATCCGGAACGGCGACTGGC
GCAGGAGCGGTGGCTGGACCAAGAGCTGGCCGTCGCGCAGCTGAACGCCC
ACCACCTCTTTGTGATCGGAACGGCGACTGGCGCAGGAGCGGTGGCTGGA
CCAAGAGCTGGCCGTCGCGCAGCTGAACGCCCACCACCTCTTTGTGATCG
GGCACCACCCATGGTTCCTGAAGGACCCTTACGAGGAAGAACACCCGATC
TGGACGCCAATTCCCAAGGCGATCAGACTTAAATGGCTGGCCAAGATGAG
CCATTGCAAGGGCACCACCCATGGTTCCTGAAGGACCCTTACGAGGAAGA
ACACCCGATCTGGACGCCAATTCCCAAGGCGATCAGACTTAAATGGCTGG
CCAAGATGAGCCATTGCAAGGTGAAGTTCATTTTCTCGGGCCACTGCCAC
CGCAACTACGAAGCGAGAATCAGACATCCGGTGACGCTCAAAACGGTGAA
GTTCATTTTCTCGGGCCACTGCCACCGCAACTACGAAGCGAGAATCAGAC
ATCCGGTGACGCTCAAAACG
back to top