mRNA_S-dermatodea_contig11259.809.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11259.809.1
Unique NamemRNA_S-dermatodea_contig11259.809.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11259.809.1 vs. uniprot
Match: A0A6H5KGL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL2_9PHAE)

HSP 1 Score: 551 bits (1421), Expect = 6.320e-183
Identity = 337/618 (54.53%), Postives = 368/618 (59.55%), Query Frame = 1 
Query:    1 AGRGHNVTFGTHNRLRPMVDETPGVAFLSAGRMPMHDHQLRSKLRNLSQSGGFWGLLTLLNDIYLPLARPMYRALLSAV----SPPXXXXXXXVP-----------------------QRNGHGPEARRADAPPPKTGVASADSIQEIA--AGGGLDPGPVTGGNQCVGRGXXXXXXXXXXL---VGAACDGIVSSVAAAGGVSPTGE-----GGFVSGEAATAAVSAPEVAPAMAGVRGGGGGSNFSWTPPFDLVVLDVGSLGGLDFAQKLGIPYMFNSPSLLFDLSGRHVSATLPGWGTGMARRMSLGDRLQNAISPRALSVFLTPAFISMNKARREHGLEPFHAQDDVFHGARILVNTVFGFEYPHGVTPLVDMTGPLLPPAIARAVSAPRPRPPLRASPLPXXXXXXXXXXXXXXXXXXXXEAKEDKEESSLGAGRVRDEREDPLALPFLIRTWLGGTGSLVAPGTAAFEVAAKQAASASGRRDDVGRNAPGTAAAG--------------------AVDGPSLPDDYGVIYVNLGRMPQLDKWQLVTVLQALSSPSEAVCWGGGGAEDRLGRYRVLWLLPREQREQLLSALLPMAPPPSFRLKVLGGFPHLGV 1683
            A RGHNVTF THN LRPMVDETPGVAFLSAGRMPMHDH LRSKLR+LSQ+GGFWGLLTLLND+YLPLARPMYRALLSAV    SPP                                +R    P  R    P                   G               GR           L   VGAA + ++ +   A   +  G                              VR G      SW  PFDLVVLD+GSLGGLDFAQKLGIPYMFNSPSLLFDLSGRHV+ATLP WGTGMARRMSLGDRLQNAISPRALSVFLTPAFI+MNKARRE GLEPF+AQDDVFHGAR+LVNT FGFEYP+GV PLV+MTGPLLPP +ARA+SA R                                     E +++GA            LPFLIRTWLGGTG+LVAPGTAAFE AAKQ+  A                                      A +GP LPDD GVIYVNLGRMPQLDKWQLVT+LQALSSPSEA+CWGGGGAEDRLGRYR+LW+LP++QREQLLSALLPM PPPSFRLKVLGG PHLG+
Sbjct:   88 AARGHNVTFATHNCLRPMVDETPGVAFLSAGRMPMHDHHLRSKLRSLSQAGGFWGLLTLLNDVYLPLARPMYRALLSAVQLPPSPPTASPLSPXXXXXXXXXXXXXXXXXXXXXXTEKKREDEVPGTRYPGQPXXXXXXXXXXXXXXXXXDCGXXXXXXXXXXXXXXXGRRGASTEQGDECLSGSVGAAGEEVIGASGVANDATEEGHQQSXXXXXXXXXXXXXXXXXXXXXXXXXCVRDGAA----SWARPFDLVVLDMGSLGGLDFAQKLGIPYMFNSPSLLFDLSGRHVTATLPAWGTGMARRMSLGDRLQNAISPRALSVFLTPAFIAMNKARREQGLEPFYAQDDVFHGARVLVNTAFGFEYPYGVNPLVEMTGPLLPPRVARALSAKR-------------------------------------ELAAVGA------------LPFLIRTWLGGTGALVAPGTAAFEAAAKQSHRAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEGPMLPDDNGVIYVNLGRMPQLDKWQLVTILQALSSPSEAMCWGGGGAEDRLGRYRILWVLPKDQREQLLSALLPMPPPPSFRLKVLGGLPHLGI 652
[Close]
BLAST of mRNA_S-dermatodea_contig11259.809.1 vs. uniprot
Match: D8LNA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNA0_ECTSI)

HSP 1 Score: 386 bits (992), Expect = 8.660e-129
Identity = 211/338 (62.43%), Postives = 234/338 (69.23%), Query Frame = 1 
Query:  667 VGSLGGLDFAQKLGIPYMFNSPSLLFDLSGRHVSATLPGWGTGMARRMSLGDRLQNAISPRALSVFLTPAFISMNKARREHGLEPFHAQDDVFHGARILVNTVFGFEYPHGVTPLVDMTGPLLPPAIARAVSAPRPRPPLRASPLPXXXXXXXXXXXXXXXXXXXXEAKEDKEESSLGAGRVRDEREDPLALPFLIRTWLGGTGSLVAPGTAAFEVAAKQAASASGRRDDVGRNAPGTAAAGAVDGPSLPDDYGVIYVNLGRMPQLDKWQLVTVLQALSSPSEAVCWGGGGAEDRLGRYRVLWLLPREQREQLLSALLPMAPPPSFRLKVLGGFPHLG 1680
            +GSLGGLDFAQKLGIPYMFNSPSLLFDLSGRHV+ATLP WGTGMARRMSLGDRLQNAISPRALSVFLTPAFI+MNKARRE GLEPF AQDDVFHGAR+LVNT FGFEYP+GV PLV+MTGPLLPP +ARA+SA R                                    +  +++G+G          A                +P +                         G+ AAG  +GP LPDD GVIYVNLGRMPQLDKWQLVT+LQALSSPSEA+CWGGGGAEDRLGRYR+LW+LP++QREQLLSALLPM PPPSFRLKVLGG PHLG
Sbjct:    1 MGSLGGLDFAQKLGIPYMFNSPSLLFDLSGRHVTATLPAWGTGMARRMSLGDRLQNAISPRALSVFLTPAFIAMNKARREQGLEPFLAQDDVFHGARVLVNTAFGFEYPYGVNPLVEMTGPLLPPRVARALSAKR------------------------------------ELVAAVGSGN---------ATXXXXXXXXXXXXXXYSPPSGG-----------------------GSGAAG--EGPMLPDDNGVIYVNLGRMPQLDKWQLVTILQALSSPSEAMCWGGGGAEDRLGRYRILWVLPKDQREQLLSALLPMPPPPSFRLKVLGGLPHLG 268
[Close]
BLAST of mRNA_S-dermatodea_contig11259.809.1 vs. uniprot
Match: A0A485KD89_9STRA (Aste57867_4673 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KD89_9STRA)

HSP 1 Score: 160 bits (406), Expect = 5.510e-39
Identity = 109/346 (31.50%), Postives = 153/346 (44.22%), Query Frame = 1 
Query:  649 DLVVLDVGSLGGLDFAQKLGIPYMFNSPSLLFDLSGRHVSATLPGWGTGMARRMSLGDRLQNAISPRALSVFLTPAFISMNKARREHGLEPFHAQDDVFHGARILVNTVFGFEYPHGVTPLVDMTGPLLPPAIARAVSAPRPRPPLRASPLPXXXXXXXXXXXXXXXXXXXXEAKEDKEESSLGAGRVRDEREDPLALPFLIRTWLGGTGSLVAPGTAAFEVAAKQAASASGRRDDVGRNAPGTAAAGAVDGPSLPDDYGVIYVNLGRMPQLDKWQLVTVLQALSSPSEAVCWGGGGAEDRLGRYRVLWLLPREQREQLLSALLPMAPPPSFRLKVLGG-FPHLGV 1683
            DLVV+D+ ++GG D   KL +PY+ NSPS LFD+ G    + +P WGTG +  MSL +R  N + PR LSV LTP F+ +NKAR E  L P+ +Q D+F GARIL+NT +G EYP  ++PLV M GPL+P                                             E   +S+  A            LP L++ W+ G   L                                              +GVIY+  G +  ++ WQ + ++  L++P++               YRVLW+LP +QR  L   L     PP+FR+KV+G  FPHL V
Sbjct:  171 DLVVVDIATIGGHDLVHKLQLPYLVNSPSTLFDMGG--TPSYVPAWGTGFSIHMSLWNRCMNLLFPRLLSVALTPPFMQLNKARWELQLAPYRSQHDIFKGARILLNTAYGLEYPRPLSPLVHMVGPLIP--------------------------------------------LESFNQSASDA-----------QLPQLVQQWMSGDDGL----------------------------------------------HGVIYICFGSLSYIEVWQAMAIIVGLTNPNDPA-------------YRVLWMLPNDQRSSLPPTL-----PPTFRIKVMGASFPHLKV 395
[Close]
BLAST of mRNA_S-dermatodea_contig11259.809.1 vs. uniprot
Match: A0A6A4Z0Q8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z0Q8_9STRA)

HSP 1 Score: 144 bits (362), Expect = 5.380e-35
Identity = 70/136 (51.47%), Postives = 95/136 (69.85%), Query Frame = 1 
Query:  631 SWTPPFDLVVLDVGSLGGLDFAQKLGIPYMFNSPSLLFDLSGRHVSATLPGWGTGMARRMSLGDRLQNAISPRALSVFLTPAFISMNKARREHGLEPFHAQDDVFHGARILVNTVFGFEYPHGVTPLVDMTGPLLP 1038
            S  PP DLVV+D+ ++GG D   KLG+PY+ NSPS+LFD+ G    + +P WGTG +  MSL +R  N + PR LSV LTP F+ +NKAR E  L P+ +Q D+F GAR+LVNT  G EYP  ++PLV++ GP++P
Sbjct:  152 SLDPP-DLVVVDIATIGGHDLVHKLGLPYLVNSPSILFDIGG--TPSYVPAWGTGFSIHMSLWNRCMNLLFPRLLSVALTPPFMQINKARWELQLTPYRSQHDMFKGARVLVNTAVGLEYPRPLSPLVELVGPIIP 284
[Close]
BLAST of mRNA_S-dermatodea_contig11259.809.1 vs. uniprot
Match: A0A1V9ZKP0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKP0_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.650e-34
Identity = 76/148 (51.35%), Postives = 100/148 (67.57%), Query Frame = 1 
Query:  631 SWTPPFDLVVLDVGSLGGLDFAQKLGIPYMFNSPSLLFDLSGRHVSATLPGWGTGMARRMSLGDRLQNAISPRALSVFLTPAFISMNKARREHGLEPFHAQDDVFHGARILVNTVFGFEYPHGVTPLVDMTGPLLPPAIARAVSAPRP 1074
            S +PP DLVV+D+ ++GG D   KL +PY+ NSPS+LFD+ G    + +P WGTG +  MSL +R  N + PR LSV LTP F+ +NKAR E  L PF +Q D+F GAR+LVNT FG EY   ++PLV+M GPLLP     A ++P P
Sbjct:  149 SASPP-DLVVVDIATIGGHDLVHKLNLPYLVNSPSILFDMGG--TPSYVPAWGTGFSIHMSLWNRCMNLLFPRLLSVALTPPFMQVNKARWELNLPPFRSQHDIFKGARVLVNTAFGLEYARPLSPLVEMVGPLLPLESLAADASPLP 293
[Close]
BLAST of mRNA_S-dermatodea_contig11259.809.1 vs. uniprot
Match: A0A6G0XBW6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XBW6_9STRA)

HSP 1 Score: 147 bits (370), Expect = 3.640e-34
Identity = 73/136 (53.68%), Postives = 95/136 (69.85%), Query Frame = 1 
Query:  631 SWTPPFDLVVLDVGSLGGLDFAQKLGIPYMFNSPSLLFDLSGRHVSATLPGWGTGMARRMSLGDRLQNAISPRALSVFLTPAFISMNKARREHGLEPFHAQDDVFHGARILVNTVFGFEYPHGVTPLVDMTGPLLP 1038
            S  PP DLVV+D+ +LGG D   KL +PY+ NSPS+LFD+ G    + +P WGTG +  MSL +R  N + PR LSV LTP F+ +NKAR E  L PF +Q D+F GARILVNT +G EYP  ++PLVD+ GP++P
Sbjct:  162 SANPP-DLVVVDIATLGGQDLVHKLQLPYVINSPSILFDIGG--TPSYVPAWGTGFSLHMSLWNRCMNLLFPRLLSVALTPPFMQINKARWELQLTPFRSQHDLFKGARILVNTAYGLEYPRPLSPLVDLVGPMIP 294
[Close]
BLAST of mRNA_S-dermatodea_contig11259.809.1 vs. uniprot
Match: D0N6P0_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N6P0_PHYIT)

HSP 1 Score: 141 bits (356), Expect = 5.310e-34
Identity = 69/138 (50.00%), Postives = 95/138 (68.84%), Query Frame = 1 
Query:  649 DLVVLDVGSLGGLDFAQKLGIPYMFNSPSLLFDLSGRHVSATLPGWGTGMARRMSLGDRLQNAISPRALSVFLTPAFISMNKARREHGLEPFHAQDDVFHGARILVNTVFGFEYPHGVTPLVDMTGPLLPPAIARAVS 1062
            D++V+D+ ++G  D A KL IPY+ NSPSLLFDL G    + +P WGTG +  MSL +R  N + PR LSV LTP F+ +NK R E  L PF +Q D+F GAR+++NT FG E+P  ++PLVD  GP++P  +AR V+
Sbjct:  201 DILVMDIATVGAQDLAHKLKIPYILNSPSLLFDLGG--APSYVPAWGTGFSENMSLWNRCMNILFPRLLSVALTPPFMELNKMRYELDLPPFRSQHDLFKGARVILNTAFGLEHPQPLSPLVDAVGPIMP--LARCVN 334
[Close]
BLAST of mRNA_S-dermatodea_contig11259.809.1 vs. uniprot
Match: A0A067C9X2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C9X2_SAPPC)

HSP 1 Score: 145 bits (366), Expect = 9.050e-34
Identity = 71/130 (54.62%), Postives = 91/130 (70.00%), Query Frame = 1 
Query:  649 DLVVLDVGSLGGLDFAQKLGIPYMFNSPSLLFDLSGRHVSATLPGWGTGMARRMSLGDRLQNAISPRALSVFLTPAFISMNKARREHGLEPFHAQDDVFHGARILVNTVFGFEYPHGVTPLVDMTGPLLP 1038
            DLVVLD+ ++GG D   KL +PY+ NSPS+LFD+ G    + +P WGTG +  MSL +R  N + PR LSV LTP F+ +NKAR E  L PF +Q D+F GARILVNT FG EY   ++PL++M GPLLP
Sbjct:  158 DLVVLDIATIGGHDLVHKLQLPYLVNSPSILFDMGG--TPSYVPAWGTGFSIHMSLWNRCMNLLFPRLLSVALTPPFMQVNKARWELDLAPFRSQHDIFKGARILVNTAFGLEYARPLSPLIEMVGPLLP 285
[Close]
BLAST of mRNA_S-dermatodea_contig11259.809.1 vs. uniprot
Match: A0A1V9YXK0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YXK0_9STRA)

HSP 1 Score: 143 bits (360), Expect = 6.160e-33
Identity = 71/146 (48.63%), Postives = 98/146 (67.12%), Query Frame = 1 
Query:  649 DLVVLDVGSLGGLDFAQKLGIPYMFNSPSLLFDLSGRHVSATLPGWGTGMARRMSLGDRLQNAISPRALSVFLTPAFISMNKARREHGLEPFHAQDDVFHGARILVNTVFGFEYPHGVTPLVDMTGPLLPPAIARAVSAPRPRPPL 1086
            DLV++D+ ++GG D   KL +PY+ NSPS+LFD+ G    + +P WGTG +  M+L +R  N + PR LSV LTP F+ +NKAR E  L P+ +Q D+F G+RI+VNT FG EY   ++PLVDM GP+LP     A +A +  PPL
Sbjct:  153 DLVIIDIATIGGHDLVHKLNLPYLVNSPSILFDMGG--TPSYVPAWGTGFSIYMTLWNRCMNLLFPRLLSVALTPPFMQVNKARWELQLAPYRSQHDIFKGSRIMVNTAFGLEYARPLSPLVDMVGPILPLESLDATTATKALPPL 296
[Close]
BLAST of mRNA_S-dermatodea_contig11259.809.1 vs. uniprot
Match: A0A421GHT4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GHT4_9STRA)

HSP 1 Score: 140 bits (353), Expect = 6.600e-33
Identity = 67/130 (51.54%), Postives = 90/130 (69.23%), Query Frame = 1 
Query:  649 DLVVLDVGSLGGLDFAQKLGIPYMFNSPSLLFDLSGRHVSATLPGWGTGMARRMSLGDRLQNAISPRALSVFLTPAFISMNKARREHGLEPFHAQDDVFHGARILVNTVFGFEYPHGVTPLVDMTGPLLP 1038
            DLVVLD+ ++G  D A KL +PY+ NSPSLLFDL G    + +P WGTG ++ MSL +R  N + PR LSV LTP F+ +NK R E  L PF +Q D+F GAR+++NT FG E+   ++PLVD  GP++P
Sbjct:   45 DLVVLDIATVGAQDLAHKLKVPYILNSPSLLFDLGG--APSYVPAWGTGFSKNMSLWNRCMNILFPRLLSVALTPPFMELNKMRYELDLPPFRSQHDLFKGARVILNTAFGLEHAQPLSPLVDAVGPIMP 172
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11259.809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGL2_9PHAE6.320e-18354.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNA0_ECTSI8.660e-12962.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A485KD89_9STRA5.510e-3931.50Aste57867_4673 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6A4Z0Q8_9STRA5.380e-3551.47Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A1V9ZKP0_9STRA1.650e-3451.35Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0XBW6_9STRA3.640e-3453.68Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
D0N6P0_PHYIT5.310e-3450.00Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A067C9X2_SAPPC9.050e-3454.62Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9YXK0_9STRA6.160e-3348.63Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A421GHT4_9STRA6.600e-3351.54Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11259contigS-dermatodea_contig11259:2142..6864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score389.4
Seed ortholog evalue2.8e-105
Seed eggNOG ortholog2880.D8LNA0
EggNOG free text desc.transferase activity, transferring hexosyl groups
EggNOG OGsKOG1192@1,KOG1192@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlycosyltransferase family 28
Ec32 orthologEc-04_004610.1
Exons4
Model size1683
Cds size1683
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11259.809.1prot_S-dermatodea_contig11259.809.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11259 2142..6864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924194.1106887-CDS-S-dermatodea_contig11259:2141..22701622924194.1106887-CDS-S-dermatodea_contig11259:2141..2270Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11259 2142..2270 +
1694079083.1610546-CDS-S-dermatodea_contig11259:2141..22701694079083.1610546-CDS-S-dermatodea_contig11259:2141..2270Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11259 2142..2270 +
1622924194.120406-CDS-S-dermatodea_contig11259:2947..35231622924194.120406-CDS-S-dermatodea_contig11259:2947..3523Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11259 2948..3523 +
1694079083.175356-CDS-S-dermatodea_contig11259:2947..35231694079083.175356-CDS-S-dermatodea_contig11259:2947..3523Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11259 2948..3523 +
1622924194.1297839-CDS-S-dermatodea_contig11259:4808..49971622924194.1297839-CDS-S-dermatodea_contig11259:4808..4997Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11259 4809..4997 +
1694079083.1829967-CDS-S-dermatodea_contig11259:4808..49971694079083.1829967-CDS-S-dermatodea_contig11259:4808..4997Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11259 4809..4997 +
1622924194.1429331-CDS-S-dermatodea_contig11259:6075..68641622924194.1429331-CDS-S-dermatodea_contig11259:6075..6864Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11259 6076..6864 +
1694079083.190883-CDS-S-dermatodea_contig11259:6075..68641694079083.190883-CDS-S-dermatodea_contig11259:6075..6864Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11259 6076..6864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11259.809.1

>prot_S-dermatodea_contig11259.809.1 ID=prot_S-dermatodea_contig11259.809.1|Name=mRNA_S-dermatodea_contig11259.809.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=561bp
AGRGHNVTFGTHNRLRPMVDETPGVAFLSAGRMPMHDHQLRSKLRNLSQS
GGFWGLLTLLNDIYLPLARPMYRALLSAVSPPPPPPPPPVPQRNGHGPEA
RRADAPPPKTGVASADSIQEIAAGGGLDPGPVTGGNQCVGRGGGGGDGGG
GGLVGAACDGIVSSVAAAGGVSPTGEGGFVSGEAATAAVSAPEVAPAMAG
VRGGGGGSNFSWTPPFDLVVLDVGSLGGLDFAQKLGIPYMFNSPSLLFDL
SGRHVSATLPGWGTGMARRMSLGDRLQNAISPRALSVFLTPAFISMNKAR
REHGLEPFHAQDDVFHGARILVNTVFGFEYPHGVTPLVDMTGPLLPPAIA
RAVSAPRPRPPLRASPLPPPPPPPPATRNSKKKTEKQSEAKEDKEESSLG
AGRVRDEREDPLALPFLIRTWLGGTGSLVAPGTAAFEVAAKQAASASGRR
DDVGRNAPGTAAAGAVDGPSLPDDYGVIYVNLGRMPQLDKWQLVTVLQAL
SSPSEAVCWGGGGAEDRLGRYRVLWLLPREQREQLLSALLPMAPPPSFRL
KVLGGFPHLGV
back to top

mRNA from alignment at S-dermatodea_contig11259:2142..6864+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11259.809.1 ID=mRNA_S-dermatodea_contig11259.809.1|Name=mRNA_S-dermatodea_contig11259.809.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4723bp|location=Sequence derived from alignment at S-dermatodea_contig11259:2142..6864+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGGCAGGGGCCACAACGTTACCTTTGGGACGCATAACCGCCTTCGACC
GATGGTGGATGAAACCCCGGGGGTGGCGTTTCTCTCGGCGGGGCGGATGC
CGATGCACGACCACCAGCTGAGATCAAAGGTCGGTTGGCGTCGAAAGGAG
AGCGGATGATACCACAACGTTTTTTTTTTTGTGCACAGCGATCGTAGCCG
TGGATGGAGCATACGCTTGTTTTTTTTTTTTGTTCGGCGGGTGCTGGAAA
AGAACGAACGTCTTCGTGTGGAGCCTTGCTGCGTATCGCACGATATTCAA
TCAAGAAAATAGCATGTGCGTTTGGTTTGGGATATATTGCCGACGACCCT
TTAGCCGGCGTTCGGATTGTGAGATGTGAGCGTGGTTGCTGCGAGCATTT
TGTTTCTCTGGCCGAGACCATTATCGTGGTGGCTGCGTCACAACCTTGGC
CGCTTACGTATAATACGAAGGCTGCCCTCTCTCAGAACCTCCGTATGTGA
CTCCTAACCCCCCCCCCCCCCACCGGGCAAGAAACAGAAGCGTCGGCTTG
ATATATCAAACGCCGCCGGTGGAAACCGGACGTCGTCTGGCGTAATTCGT
GCTCTTTGTCCGATTCGTCGCTTGTCTCGTCGATCCCCAACTCGTGTTTC
CTCTCACCCGTCCTGACCGATCCGCCCAACTCCTCTCTCCGCACCCTATC
GGCCCGCGCCTCAACCACACTACAACACCCGACCGACCGACCGACCGACC
AACCGTCCGTCCCATCTGATCCGGCGGATGGCCGCGCAAAAACACGCACA
CACCAGTTGCGGAACTTGTCGCAGTCTGGAGGATTCTGGGGCCTGCTCAC
CCTCCTCAACGACATCTACCTGCCGCTGGCGCGGCCGATGTACCGCGCCC
TGCTCTCGGCAGTCTCGCCACCCCCGCCGCCGCCCCCGCCGCCAGTACCG
CAAAGAAACGGGCACGGGCCCGAAGCGAGAAGAGCGGACGCACCACCACC
AAAGACGGGGGTTGCGTCGGCCGATAGCATCCAGGAGATAGCAGCCGGCG
GAGGGTTGGACCCCGGCCCAGTTACCGGGGGAAACCAATGTGTGGGTAGA
GGTGGCGGCGGCGGCGATGGAGGGGGGGGGGGGTTGGTGGGAGCCGCTTG
CGACGGGATCGTGTCGAGTGTGGCAGCAGCTGGGGGCGTGTCGCCGACGG
GGGAGGGTGGTTTTGTCTCTGGGGAGGCAGCAACGGCGGCGGTATCAGCG
CCGGAGGTGGCTCCAGCGATGGCGGGGGTGCGAGGAGGAGGAGGGGGTAG
CAACTTCTCCTGGACGCCTCCATTCGACTTGGTCGTGCTGGACGTGGGTT
CGCTGGGAGGGCTTGACTTTGCGCAAAAGTTGGTAAGGAAGGGAGGGAGG
AGGGGTGGGTGGGTGGGTGGGTGGATGGAGGGGGTGTAAGGCTCTTGTAC
CATAACCATATAACATCGTACACGATATATGACACCATAGCATCACACGT
GACAAGTGAGCCTCCATAGGTGTAGTGTAGCTTGGACTATCATCCCTCTT
GAAAAGGTGGGACCCCAACCCTCGCTCTATTTTTTTGAAATCGTTAATTT
TTTAAGGGGGGGGTGTACTTATGTTAAACGCATGTCGCACCCATACGGGT
ATAGACCACTTGTCCCAACAATACCGGGACGAAGCGATATGCCGGGTTGG
TTTTCGCCGGCCAAGCTGCGTTTCACGAGGATGATACCAGCTGCTAGCCA
TCATCCTTGCGTTTGCGACGCCAACCGATATGCCATGGGTTGACTGGATA
CAACTGGTAACCAAATGTTGCACATTCAGTAGGCGTGACTATGCTCCAAG
TACCGCAAAGGGATTTTGATCGCCGTGCGAACGCAAAAGCGCGGCACGCA
CACAACACACACGACGGCATCTGTGTGATACACTCGGACTATAATCTGCT
CATGAGTACTCCTGGCGGAGTACCATTCATAAGTCAATGGTTGCTCTAGG
GCGTTCCAACAGTATTCTGTTCAGCAGGTGCACTATAGGATGTGATGCGT
TTCACCCATTTGGGGAGAGGCAAGACTCTTCGACCGAGGTCTCCGAGCTC
AAAGGACAAACGGTATGAACCACCCCATGCCCCCAACAGTTTTCCAGCTC
CATGCCACAAGAGCTAACCCTTCCTCAACCAACCCCACCTCGAACATCAA
TAGGGGGGCGTGTCACGATACGTTGCTAGACGACGCTCGGTCGCCCGTGT
CGTTTGCTACGCTGTTCCGGTGGGGGATTTCGCTATTGCCGCATTGCGTG
TAGTATTCGAACTCATCTGTAGTCTCGTGGTATCCCAGCGTGTCTTCCCC
GAGCCTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCGCCCCC
CCCCCCTCCCGCCCCCCCCCCCCGCGCCCCCCCCCCCCCCCCCCTCCCTG
CGCCGCTCCCCCCCCCCCTCGCCCNNNNNNNNNNCTTTCTTTTGTTTTTT
TACTCCCATTTTTTTTTCTTGTTTCCCCCCCCCTTCTTCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCGGGTCCTGCTCGCGGGCTTCCTCTCCGTTTG
ATACCATTGAGTCGACGCCTGCTCATGCACCGTGTCCCATCTCCTCATAC
TCGCGCGTTATCGTCAGGGCATCCCGTACATGTTCAACTCGCCGAGCCTG
CTTTTCGACTTGTCCGGGAGACACGTCTCGGCGACCCTGCCCGGTTGGGG
CACCGGGATGGCCCGCCGCATGAGCCTCGGCGATCGGCTGCAGAACGCCA
TATCCCCCAGGGCGCTGTCTGTGTTTCTAACGCCAGCGTTCATCTCGATG
AACAAGGTGGGGTCGCGGTTTTTTGTTTGGCTTTCGGGTTGAAGAGGGTT
GGGTCGCTTGTCGCGAGCAAGGGCGGTCGAACAACAGGGTATTTCGAGCT
GTTGCTGCGGGGTTTGCTGCGTCGAGGACAGAACACCAAAATCCGGCGCC
GAAGGCAGCGAGCTTTGTGCGGACACTTTTACGCTTTGTCTCTGGTATTG
TTTCGGTCTGGGTCCGTGCATGGCGTGAAGCGGAACGACCGTGGTCTTGT
GTATCGGTGCGTGAGCAGTTTCTCGTTTCTGATGCGCTGACGTAGGTGAG
CGTTTCATCAGTGTTATCACCGTGTGCGTAGTGATTGGTCGATTGATTGA
CCGACTGATTGGTTGCTTGATTGATTGATGGATTGATTGATTGATTATCA
CACACGCAGCCGTATTGGTCTGTAGTGTAAACCCGCGACAGCAGAGGTTT
GTGCGCCTTGCAACAGCTCCACAAAACAGATAAAAACAAGAAAAGTAAAA
TATTGTCCGTATGATAGCTTCGTTACCGAGGGTGGGATGTTTGTTTATCT
GTGTGAGCCCAGCCAACAACAAAAAACAACAGTAACTAGTGGTGTCGCGG
TCCCCAAAATATACATACAAAACGCCCCCCTTACCGTTAGAGCCCTTTTG
GAACAAACTGAGCTCGTTCTTCGGGTCCACCCGCCTGTACCTTATTTCAC
ATCGAACAGGTACACGGTAGTACTTGTACCCGATCGATGGCTTGCTCATC
GCCGTACTGTACACACACACAGTGGCGGTCGGAGAGTGTTGAAACCCTGC
CGGGAAGCAGCTTTTGCGTTCACACGGGTGCGCATGTGCGGGCACCCTCA
CCTCACCGCAATGTACTGTTAATATAGTATTCATACTATTCATACTATTA
ACAATGTACCCATACCCGCAGTGACGGTACTCCGCACAAAACAGATTCAG
TCTCAACAGGGGTTCCTCCTATTGCGCCTGAAGATGTTTCACCACTCCAT
CCTGATCCCGCCGATGCATGAACACGCTGCCAGCCAGTAGCAACTCCGCA
ACCTTCCACCCCCCCTCCCGCCTCCCCACCGCAGGCACGGAGAGAGCACG
GCCTCGAGCCCTTCCACGCGCAGGATGACGTGTTCCATGGCGCCCGCATC
CTCGTCAACACGGTGTTCGGGTTCGAGTACCCCCACGGCGTCACCCCGCT
CGTCGACATGACCGGTCCCCTCCTCCCCCCGGCCATCGCGCGCGCTGTGT
CGGCTCCGAGGCCACGTCCCCCCTTGCGCGCCTCGCCCCTCCCGCCCCCG
CCCCCGCCGCCGCCGGCGACTAGAAACAGCAAGAAGAAGACAGAGAAGCA
GTCGGAGGCGAAGGAGGACAAGGAGGAGAGCTCTTTGGGAGCGGGGCGGG
TGCGCGACGAGCGGGAAGACCCGCTGGCGCTTCCGTTTCTGATCCGGACT
TGGCTGGGGGGCACGGGATCTCTCGTTGCCCCCGGCACGGCCGCGTTCGA
GGTGGCGGCGAAGCAGGCGGCGTCCGCGTCGGGGAGAAGGGACGACGTCG
GGAGGAACGCCCCCGGTACAGCCGCCGCCGGCGCGGTCGACGGCCCGTCG
CTCCCCGATGACTACGGGGTGATCTATGTCAACCTCGGGCGCATGCCTCA
GCTCGACAAGTGGCAGCTGGTGACGGTGCTCCAGGCGCTGTCGTCTCCGT
CCGAGGCGGTGTGCTGGGGGGGCGGCGGGGCGGAGGACAGGCTGGGGCGG
TATCGGGTCTTGTGGCTCTTGCCGCGGGAGCAGCGGGAACAGCTGCTGTC
GGCGCTCCTGCCGATGGCACCGCCTCCGTCGTTCCGCCTGAAGGTCTTGG
GGGGTTTCCCGCACCTGGGGGTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11259:2142..6864+

>mRNA_S-dermatodea_contig11259.809.1 ID=mRNA_S-dermatodea_contig11259.809.1|Name=mRNA_S-dermatodea_contig11259.809.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3366bp|location=Sequence derived from alignment at S-dermatodea_contig11259:2142..6864+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGGCAGGGGCCACAACGTTACCTTTGGGACGCATAACCGCCTTCGACC
GATGGTGGATGAAACCCCGGGGGTGGCGTTTCTCTCGGCGGGGCGGATGC
CGATGCACGACCACCAGCTGAGATCAAAGGCGGGCAGGGGCCACAACGTT
ACCTTTGGGACGCATAACCGCCTTCGACCGATGGTGGATGAAACCCCGGG
GGTGGCGTTTCTCTCGGCGGGGCGGATGCCGATGCACGACCACCAGCTGA
GATCAAAGTTGCGGAACTTGTCGCAGTCTGGAGGATTCTGGGGCCTGCTC
ACCCTCCTCAACGACATCTACCTGCCGCTGGCGCGGCCGATGTACCGCGC
CCTGCTCTCGGCAGTCTCGCCACCCCCGCCGCCGCCCCCGCCGCCAGTAC
CGCAAAGAAACGGGCACGGGCCCGAAGCGAGAAGAGCGGACGCACCACCA
CCAAAGACGGGGGTTGCGTCGGCCGATAGCATCCAGGAGATAGCAGCCGG
CGGAGGGTTGGACCCCGGCCCAGTTACCGGGGGAAACCAATGTGTGGGTA
GAGGTGGCGGCGGCGGCGATGGAGGGGGGGGGGGGTTGGTGGGAGCCGCT
TGCGACGGGATCGTGTCGAGTGTGGCAGCAGCTGGGGGCGTGTCGCCGAC
GGGGGAGGGTGGTTTTGTCTCTGGGGAGGCAGCAACGGCGGCGGTATCAG
CGCCGGAGGTGGCTCCAGCGATGGCGGGGGTGCGAGGAGGAGGAGGGGGT
AGCAACTTCTCCTGGACGCCTCCATTCGACTTGGTCGTGCTGGACGTGGG
TTCGCTGGGAGGGCTTGACTTTGCGCAAAAGTTGTTGCGGAACTTGTCGC
AGTCTGGAGGATTCTGGGGCCTGCTCACCCTCCTCAACGACATCTACCTG
CCGCTGGCGCGGCCGATGTACCGCGCCCTGCTCTCGGCAGTCTCGCCACC
CCCGCCGCCGCCCCCGCCGCCAGTACCGCAAAGAAACGGGCACGGGCCCG
AAGCGAGAAGAGCGGACGCACCACCACCAAAGACGGGGGTTGCGTCGGCC
GATAGCATCCAGGAGATAGCAGCCGGCGGAGGGTTGGACCCCGGCCCAGT
TACCGGGGGAAACCAATGTGTGGGTAGAGGTGGCGGCGGCGGCGATGGAG
GGGGGGGGGGGTTGGTGGGAGCCGCTTGCGACGGGATCGTGTCGAGTGTG
GCAGCAGCTGGGGGCGTGTCGCCGACGGGGGAGGGTGGTTTTGTCTCTGG
GGAGGCAGCAACGGCGGCGGTATCAGCGCCGGAGGTGGCTCCAGCGATGG
CGGGGGTGCGAGGAGGAGGAGGGGGTAGCAACTTCTCCTGGACGCCTCCA
TTCGACTTGGTCGTGCTGGACGTGGGTTCGCTGGGAGGGCTTGACTTTGC
GCAAAAGTTGGGCATCCCGTACATGTTCAACTCGCCGAGCCTGCTTTTCG
ACTTGTCCGGGAGACACGTCTCGGCGACCCTGCCCGGTTGGGGCACCGGG
ATGGCCCGCCGCATGAGCCTCGGCGATCGGCTGCAGAACGCCATATCCCC
CAGGGCGCTGTCTGTGTTTCTAACGCCAGCGTTCATCTCGATGAACAAGG
GCATCCCGTACATGTTCAACTCGCCGAGCCTGCTTTTCGACTTGTCCGGG
AGACACGTCTCGGCGACCCTGCCCGGTTGGGGCACCGGGATGGCCCGCCG
CATGAGCCTCGGCGATCGGCTGCAGAACGCCATATCCCCCAGGGCGCTGT
CTGTGTTTCTAACGCCAGCGTTCATCTCGATGAACAAGGCACGGAGAGAG
CACGGCCTCGAGCCCTTCCACGCGCAGGATGACGTGTTCCATGGCGCCCG
CATCCTCGTCAACACGGTGTTCGGGTTCGAGTACCCCCACGGCGTCACCC
CGCTCGTCGACATGACCGGTCCCCTCCTCCCCCCGGCCATCGCGCGCGCT
GTGTCGGCTCCGAGGCCACGTCCCCCCTTGCGCGCCTCGCCCCTCCCGCC
CCCGCCCCCGCCGCCGCCGGCGACTAGAAACAGCAAGAAGAAGACAGAGA
AGCAGTCGGAGGCGAAGGAGGACAAGGAGGAGAGCTCTTTGGGAGCGGGG
CGGGTGCGCGACGAGCGGGAAGACCCGCTGGCGCTTCCGTTTCTGATCCG
GACTTGGCTGGGGGGCACGGGATCTCTCGTTGCCCCCGGCACGGCCGCGT
TCGAGGTGGCGGCGAAGCAGGCGGCGTCCGCGTCGGGGAGAAGGGACGAC
GTCGGGAGGAACGCCCCCGGTACAGCCGCCGCCGGCGCGGTCGACGGCCC
GTCGCTCCCCGATGACTACGGGGTGATCTATGTCAACCTCGGGCGCATGC
CTCAGCTCGACAAGTGGCAGCTGGTGACGGTGCTCCAGGCGCTGTCGTCT
CCGTCCGAGGCGGTGTGCTGGGGGGGCGGCGGGGCGGAGGACAGGCTGGG
GCGGTATCGGGTCTTGTGGCTCTTGCCGCGGGAGCAGCGGGAACAGCTGC
TGTCGGCGCTCCTGCCGATGGCACCGCCTCCGTCGTTCCGCCTGAAGGTC
TTGGGGGGTTTCCCGCACCTGGGGGTGGCACGGAGAGAGCACGGCCTCGA
GCCCTTCCACGCGCAGGATGACGTGTTCCATGGCGCCCGCATCCTCGTCA
ACACGGTGTTCGGGTTCGAGTACCCCCACGGCGTCACCCCGCTCGTCGAC
ATGACCGGTCCCCTCCTCCCCCCGGCCATCGCGCGCGCTGTGTCGGCTCC
GAGGCCACGTCCCCCCTTGCGCGCCTCGCCCCTCCCGCCCCCGCCCCCGC
CGCCGCCGGCGACTAGAAACAGCAAGAAGAAGACAGAGAAGCAGTCGGAG
GCGAAGGAGGACAAGGAGGAGAGCTCTTTGGGAGCGGGGCGGGTGCGCGA
CGAGCGGGAAGACCCGCTGGCGCTTCCGTTTCTGATCCGGACTTGGCTGG
GGGGCACGGGATCTCTCGTTGCCCCCGGCACGGCCGCGTTCGAGGTGGCG
GCGAAGCAGGCGGCGTCCGCGTCGGGGAGAAGGGACGACGTCGGGAGGAA
CGCCCCCGGTACAGCCGCCGCCGGCGCGGTCGACGGCCCGTCGCTCCCCG
ATGACTACGGGGTGATCTATGTCAACCTCGGGCGCATGCCTCAGCTCGAC
AAGTGGCAGCTGGTGACGGTGCTCCAGGCGCTGTCGTCTCCGTCCGAGGC
GGTGTGCTGGGGGGGCGGCGGGGCGGAGGACAGGCTGGGGCGGTATCGGG
TCTTGTGGCTCTTGCCGCGGGAGCAGCGGGAACAGCTGCTGTCGGCGCTC
CTGCCGATGGCACCGCCTCCGTCGTTCCGCCTGAAGGTCTTGGGGGGTTT
CCCGCACCTGGGGGTG
back to top