mRNA_S-dermatodea_contig11251.802.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11251.802.1
Unique NamemRNA_S-dermatodea_contig11251.802.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11251.802.1 vs. uniprot
Match: A0A6H5JV35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV35_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.600e-45
Identity = 80/105 (76.19%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:    4 VKLVGSRARLSVDVQCPTDEVDAASVLSNIDHAVCRALGGGGLGSSAPGPVHLNLMFRENLAPVDGAVRDAGVLGLSSRWSDRCLDSPRISQWEAGVEPFTKNIG 318
            V L+GSRARLS+DVQCPTDEV AA +LS+IDHAV RALGGGG+    PGPVHLN MFRENLAPV+GAVRDAGV GLSS WSDRCL+SPR+++WEAG+EPFT   G
Sbjct:  793 VNLLGSRARLSMDVQCPTDEVSAACLLSDIDHAVSRALGGGGV----PGPVHLNFMFRENLAPVEGAVRDAGVPGLSSAWSDRCLESPRMARWEAGIEPFTTTAG 893
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BLAST of mRNA_S-dermatodea_contig11251.802.1 vs. uniprot
Match: D8LMF2_ECTSI (Similar to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 4.120e-45
Identity = 80/105 (76.19%), Postives = 89/105 (84.76%), Query Frame = 1 
Query:    4 VKLVGSRARLSVDVQCPTDEVDAASVLSNIDHAVCRALGGGGLGSSAPGPVHLNLMFRENLAPVDGAVRDAGVLGLSSRWSDRCLDSPRISQWEAGVEPFTKNIG 318
            V L+GSRARLS+DVQCPTDEV AA +LS+IDHAV RALGGG      PGPVHLN MFRENLAPV+GAVRDAGV GLSS WSDRCLDSPR+++WEAG+EPFT   G
Sbjct: 1025 VNLLGSRARLSLDVQCPTDEVSAACLLSDIDHAVSRALGGGXX-XGVPGPVHLNFMFRENLAPVEGAVRDAGVPGLSSAWSDRCLDSPRMARWEAGIEPFTTTAG 1128
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BLAST of mRNA_S-dermatodea_contig11251.802.1 vs. uniprot
Match: A0A4D9D2W1_9STRA (MR_MLE domain-containing protein n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2W1_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.980e-23
Identity = 51/94 (54.26%), Postives = 62/94 (65.96%), Query Frame = 1 
Query:   25 ARLSVDVQCPTDEVDAASVLSNIDHAVCRALGGGGLGSSAPGPVHLNLMFRENLAPVDGAVRDAGVLGLSSRWSDRCLDSPRISQWEAGVEPFT 306
            AR + DV CPT EV A+S+LS++D+AV  A G      + PGPVHLN M RENLAP  GAVRD  V GL S W D CL   R +QWE  ++P+T
Sbjct:  664 ARWTKDVPCPTPEVLASSLLSDVDYAVSMARG------ADPGPVHLNFMLRENLAPEGGAVRDTAVPGLHSEWPDACLGGRRFAQWERSLQPYT 751
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BLAST of mRNA_S-dermatodea_contig11251.802.1 vs. uniprot
Match: A0A835Z971_9STRA (ADC synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z971_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 6.190e-21
Identity = 52/108 (48.15%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:    4 VKLVGSRARLSVDVQCPTDEVDAASVLSNIDHAVCRALGGGGLGSSAP----GPVHLNLMFRENLAPVDGAVRDAGVLGLSSRWSDRCLDSPRISQWEAGVEPFTKNI 315
            V L+ + AR   DV  P D V A ++LS++ HAV RA G             GPVHLNLMFRENLAP  GA+RDA   GL+S WS RCLD+P+ ++W AG  P    +
Sbjct:  336 VHLLRNCARWFRDVAPPDDAVSACALLSDVSHAVSRASGSSXXXXXXXXXDAGPVHLNLMFRENLAPEGGAIRDAQCSGLASDWSPRCLDTPQFARWLAGDAPLAVTL 443
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BLAST of mRNA_S-dermatodea_contig11251.802.1 vs. uniprot
Match: A0A7S0H9L0_9CRYP (Isochorismate synthase (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H9L0_9CRYP)

HSP 1 Score: 79.7 bits (195), Expect = 3.650e-15
Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:    1 QVKLVGSRARLSVDVQCPTDEVDAASVLSNIDHAVCRALGGGGLGSSAPGPVHLNLMFRENLAPVDGAVRDAGVLG-LSSRWSDRCLDSPRISQWEAGVEPFT 306
            Q  + G   R S D+ CP+D++ A  +LS++D+AV RA       SS  GPVHLN  FRENLAP  G VRD      +SS WS  C+ +  I++WE    P T
Sbjct:  689 QAGIFGRYVRWSRDICCPSDQIPANVLLSDVDYAVHRA------SSSPRGPVHLNFQFRENLAPDGGPVRDNPPGNPISSTWSKGCISTLSIAKWEHSALPHT 785
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BLAST of mRNA_S-dermatodea_contig11251.802.1 vs. uniprot
Match: L1J7F3_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J7F3_GUITC)

HSP 1 Score: 77.4 bits (189), Expect = 2.240e-14
Identity = 45/103 (43.69%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:    1 QVKLVGSRARLSVDVQCPTDEVDAASVLSNIDHAVCRALGGGGLGSSAPGPVHLNLMFRENLAPVDGAVRDAGVLG-LSSRWSDRCLDSPRISQWEAGVEPFT 306
            Q  + G   R S D+ CP+D++ A  +LS++D AV RA       SS  GPVHLN  FRENLAP  G VRD      +SS WS  C+ S  +++WE    P T
Sbjct:  137 QAGIFGRYVRWSRDLCCPSDQIPANVLLSDVDFAVHRA------SSSPRGPVHLNFQFRENLAPDGGPVRDNPPGNPISSTWSRACIASLNMAKWEHSALPHT 233
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BLAST of mRNA_S-dermatodea_contig11251.802.1 vs. uniprot
Match: A0A7R9U9Y8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9Y8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.820e-13
Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:   43 VQCPTDEVDAASVLSNIDHAVCRALGGGGLGSSAPGPVHLNLMFRENLAPVDGAVRD----AGVLGLSSRWS-DRCLDSPRISQWEAGVEPFT 306
            +  P +EV  A++LS++DHAV  ++          GPVH+N  FRENLAPV GA+R       +   S+RW  D  L  PR  QW  GV+P+T
Sbjct:    6 LSAPDEEVPLAALLSDVDHAVQCSI-------KLRGPVHVNFPFRENLAPVSGAIRGDPRPRSLASESARWDPDLWLSGPRTYQWAQGVKPYT 91
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BLAST of mRNA_S-dermatodea_contig11251.802.1 vs. uniprot
Match: A0A7S2PIL3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PIL3_9DINO)

HSP 1 Score: 71.6 bits (174), Expect = 2.490e-12
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:    1 QVKLVGSRARLSVDVQCPTDEVDAASVLSNIDHAVCRALGGGGLGSSAPGPVHLNLMFRENLAPVDGAVRDAGVLGLSSRWSDRCLDSPRISQWEAGVEPFTKNI 315
            Q  + G+  R + D+ CPT EV A ++LS++D AV  A    G  +  PGPVHLN  FRENLAP  GAVR  G    SS W      + ++ +W     P++  +
Sbjct:  646 QPGIFGAHVRWAKDMPCPTTEVPAHALLSDVDLAVAHA---SGALADHPGPVHLNFAFRENLAPDKGAVR--GCPERSSAWDSAYAGTSQVCRWLRDPTPWSNYV 745
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BLAST of mRNA_S-dermatodea_contig11251.802.1 vs. uniprot
Match: A0A496PRM4_9BACT (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A496PRM4_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 3.470e-10
Identity = 41/97 (42.27%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:    1 QVKLVGSRARLSVDVQCPTDEVDAASVLSNIDHAVCRALGGGGLGSSAPGPVHLNLMFRENLAPVDGAVRDAGVLGLSSRW--SDRCLDSPRISQWE 285
            QV+L G   R   D+ CP+DE+DA+ +L+ +D AV RAL       S  GPVH+N MFRE LAP        G L   S W  SD+      IS+ E
Sbjct:  124 QVQLYGDYVRWFCDLPCPSDEIDASFILTTVDQAVYRAL------RSPSGPVHINCMFREPLAPTGEFEDYLGYLSPVSSWMVSDQPYTQYSISRSE 214
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BLAST of mRNA_S-dermatodea_contig11251.802.1 vs. uniprot
Match: A0A7S3ABE2_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ABE2_9RHOD)

HSP 1 Score: 64.7 bits (156), Expect = 6.260e-10
Identity = 39/83 (46.99%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:    1 QVKLVGSRARLSVDVQCPTDEVDAASVLSNIDHAVCRALGGGGLGSSAPGPVHLNLMFRENLAPVDGAVRDAGVLGLSSRWSD 249
            QVK+ G   R   DVQ P D V   SVLS IDHA+ +A       S+  GPVHLNLMFRE LAP   A     VL     W +
Sbjct:  183 QVKIFGRYTRFFSDVQSPIDAVPLRSVLSTIDHAIMKAT------STYSGPVHLNLMFREKLAPDPTAWDHVNVLQGLDEWEN 259
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11251.802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV35_9PHAE1.600e-4576.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMF2_ECTSI4.120e-4576.19Similar to Isochorismate Synthase n=1 Tax=Ectocarp... [more]
A0A4D9D2W1_9STRA3.980e-2354.26MR_MLE domain-containing protein n=6 Tax=Monodopsi... [more]
A0A835Z971_9STRA6.190e-2148.15ADC synthase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S0H9L0_9CRYP3.650e-1543.69Isochorismate synthase (Fragment) n=1 Tax=Hanusia ... [more]
L1J7F3_GUITC2.240e-1443.69Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7R9U9Y8_9STRA5.820e-1341.94Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2PIL3_9DINO2.490e-1239.05Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A496PRM4_9BACT3.470e-1042.272-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1... [more]
A0A7S3ABE2_9RHOD6.260e-1046.99Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11251contigS-dermatodea_contig11251:3931..5713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue1.6e-38
Seed eggNOG ortholog2880.D8LMF2
KEGG rclassRC00588,RC01053,RC02148,RC02186,RC02475
KEGG koko:K02552,ko:K14759
KEGG ReactionR01717,R04031,R08165,R08166
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,map00130,map01053,map01100,map01110,map01130
KEGG ModuleM00116
EggNOG free text desc.anthranilate synthase activity
EggNOG OGsCOG0147@1,COG0596@1,KOG1223@2759,KOG2382@2759
EC2.2.1.9,4.2.1.113,4.2.99.20,5.4.4.2
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size319
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924193.638259-CDS-S-dermatodea_contig11251:3931..40401622924193.638259-CDS-S-dermatodea_contig11251:3931..4040Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11251 3932..4040 -
1694079082.8288143-CDS-S-dermatodea_contig11251:3931..40401694079082.8288143-CDS-S-dermatodea_contig11251:3931..4040Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11251 3932..4040 -
1622924193.6486595-CDS-S-dermatodea_contig11251:5504..57131622924193.6486595-CDS-S-dermatodea_contig11251:5504..5713Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11251 5505..5713 -
1694079082.8408256-CDS-S-dermatodea_contig11251:5504..57131694079082.8408256-CDS-S-dermatodea_contig11251:5504..5713Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11251 5505..5713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11251.802.1prot_S-dermatodea_contig11251.802.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11251 3932..5713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11251.802.1

>prot_S-dermatodea_contig11251.802.1 ID=prot_S-dermatodea_contig11251.802.1|Name=mRNA_S-dermatodea_contig11251.802.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
QVKLVGSRARLSVDVQCPTDEVDAASVLSNIDHAVCRALGGGGLGSSAPG
PVHLNLMFRENLAPVDGAVRDAGVLGLSSRWSDRCLDSPRISQWEAGVEP
FTKNIG
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mRNA from alignment at S-dermatodea_contig11251:3931..5713-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11251.802.1 ID=mRNA_S-dermatodea_contig11251.802.1|Name=mRNA_S-dermatodea_contig11251.802.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1783bp|location=Sequence derived from alignment at S-dermatodea_contig11251:3931..5713- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTAAAGCTGGTCGGCTCACGCGCCAGGCTTTCCGTGGACGTGCAGTG
CCCCACGGATGAGGTCGACGCTGCGTCTGTGCTGTCCAACATCGATCACG
CCGTCTGCCGGGCCCTGGGAGGAGGGGGGCTGGGAAGCAGCGCGCCCGGG
CCTGTACATCTCAACCTCATGTTTCGTGAAAACCTGGCTCCCGTGGACGG
AGCCGTCAGGTGCGTTCTGGTCCTTGTTCCGTTTGAGGTTGCGTTGGTGT
GGGTACCAGGTCCCATACAAAGACGTGACGACATTTTCCAGAGGATGTGA
CGTGCAGACGCGACGCATCGTAGGTAGCCACGGCTATCGCCCGTGTGGTG
TGCGTCACGATGAGGAGCCCCCACTAAAAAATAACGATTTCAGAAACATG
GAGCGAGCGTTGGGGTCCCACCCTTTCAACAGGGTAGATGGTCCAAGCTA
CACCTATATGGAGCCCACCCCCCCCCCCCCCCCCCCCACACCAAACACCT
CGGCTCTGGTATTAGTTTGCGAACAGTATGATCGGCAGGAGAAAAAAACC
TGTGGCGGCGATCGTGGCTGTTCCTTACTGTAATGGCGGTGGAAACGTGG
CGCCCTGCGACGTTGTTTTGCCCGCACGCACGGCTCACTTGTGCGTGTTG
CGGTTACGTGTATTCGTATAAGTATTATAGGGGGAGGAAGGGCCCCGTTG
GGGCCAACGACAGATTTACGGTCGAGAAAGAAAACTATTTTTAGCAAGCA
ATCAAGCACAGTACCGCACTTAATAGACCAGGTATAGAGGCGAGTCACGA
ATTGTACATGTGTCAGATTGAGTAGCGGTATTATTTTTTTTGTCTTGGGT
TTAGTGTTGGGAACGGTTAAAAATAAACTGCGACTTGCGCTAGCTTTATA
TGCATTATGTGTGGTACAATGTCCGTACCGAAGACCTTGGGGCGAAAAGC
AGACTCAGGTCGAAAAGGGTTACATGTAAAGTTCATCAATCGTCAAAATC
TTCATCATCGTTATCACCACGAGCACCAGCACTCAGTAACGAAAGGGTCG
CATGTAAGTTCAGCACTCGGTCACGAAAGGGTGTCATCATTATGATCATC
ATCACCAACACCACTGTCACCATCGCCATCATCACTGTCATCATAACACC
AGCGTTCAGCCATGCAAGCGTTAAATGTATATCCATCAAAAAGGACCTGT
GGAGAGGCGAGGGAACATCGTCTGAGTCCGAGTTTTCTTCTGGCGGTTTT
CTATATCTGGGGTACTAATTGTTCTTTCTTGTACCATGGTATGTACCTGG
TACCTGGGACGGTACGGTGTATAGTAGAAAGAGAGTTGTGATTAGTTATT
TTCTCCTTGACTCTCTGCTATAAGTGTATGACCACAAGTCGGGTCGGGTC
GGATTAAGCCGATCGGCTATACGTGTGCAAATCAATCGAATAAATAAATC
AATCAAATTTGCTACAAGTATATGACCACAAGTCGGGTCGGATTAAGCCG
ATCGGCTATACGTGTGCAAATCAATCAAATAAATCAATCAATCAATCATC
ATCATCATCACCATCACTACCATCACCGTCATCGCGGTATCATCAAATAC
CATGACACATAACACATACACACAACACGCGGCCGCCGCTGCTAATGTGC
GCGATTATTTTGCACGCGAGCAGGGACGCGGGCGTTCTAGGGCTTTCATC
TCGTTGGTCGGATCGCTGCCTGGATTCTCCAAGGATTTCCCAATGGGAGG
CCGGCGTGGAGCCTTTCACGAAGAACATCGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11251:3931..5713-

>mRNA_S-dermatodea_contig11251.802.1 ID=mRNA_S-dermatodea_contig11251.802.1|Name=mRNA_S-dermatodea_contig11251.802.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig11251:3931..5713- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTAAAGCTGGTCGGCTCACGCGCCAGGCTTTCCGTGGACGTGCAGTG
CCCCACGGATGAGGTCGACGCTGCGTCTGTGCTGTCCAACATCGATCACG
CCGTCTGCCGGGCCCTGGGAGGAGGGGGGCTGGGAAGCAGCGCGCCCGGG
CCTGTACATCTCAACCTCATGTTTCGTGAAAACCTGGCTCCCGTGGACGG
AGCCGTCAGCAGGTAAAGCTGGTCGGCTCACGCGCCAGGCTTTCCGTGGA
CGTGCAGTGCCCCACGGATGAGGTCGACGCTGCGTCTGTGCTGTCCAACA
TCGATCACGCCGTCTGCCGGGCCCTGGGAGGAGGGGGGCTGGGAAGCAGC
GCGCCCGGGCCTGTACATCTCAACCTCATGTTTCGTGAAAACCTGGCTCC
CGTGGACGGAGCCGTCAGGGACGCGGGCGTTCTAGGGCTTTCATCTCGTT
GGTCGGATCGCTGCCTGGATTCTCCAAGGATTTCCCAATGGGAGGCCGGC
GTGGAGCCTTTCACGAAGAACATCGGGGGACGCGGGCGTTCTAGGGCTTT
CATCTCGTTGGTCGGATCGCTGCCTGGATTCTCCAAGGATTTCCCAATGG
GAGGCCGGCGTGGAGCCTTTCACGAAGAACATCGGG
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