mRNA_S-dermatodea_contig11238.796.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11238.796.1
Unique NamemRNA_S-dermatodea_contig11238.796.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11238.796.1 vs. uniprot
Match: D8LJD6_ECTSI (Ribosomal protein L11 methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJD6_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 4.010e-45
Identity = 76/99 (76.77%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:   16 DELWWGEGQAVQSLEIGCRDTKGNVLDPWRLSELLMDVGAMSVSVDDSSLGTEEEKPILHDPGTSKAFDPSVPAPSSIGRREFWGGSSRVVALFPREWD 312
            DELWW EG AVQSLEI CRD KG+ LDPW LSELLMDVGAMSVSVDD+ LGT  E P+LH+   SKAFDPSVP PS  GR++ WGGSSRVVALFPREWD
Sbjct:   79 DELWWEEGGAVQSLEIACRDAKGSELDPWFLSELLMDVGAMSVSVDDADLGTGAEVPLLHEHTNSKAFDPSVPLPSVSGRKDMWGGSSRVVALFPREWD 177
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BLAST of mRNA_S-dermatodea_contig11238.796.1 vs. uniprot
Match: A0A6V1NRU4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRU4_HETAK)

HSP 1 Score: 64.7 bits (156), Expect = 5.880e-10
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 1 
Query:   46 VQSLEIGCRDTKGNVLDPWRLSELLMDVGAMSVSVDDSSLGTEEEKPILHDPGTSKA-FDPS------------VPAPSSIGRREFWGGSSRVVALFPREWD 312
            +++L I CRD  GN LDP  LS+ LM++GA SVS++DS+ GT  E P+  +P T    FD +              A ++   R  W  +SRVVA  P  W+
Sbjct:   82 LKALVIECRDDSGNDLDPSLLSDFLMEIGACSVSIEDSNRGTAAETPVYREPPTGGVVFDGADTLAGTPTGALQATAAAAAAPRPLWA-ASRVVAHLPAAWN 182
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BLAST of mRNA_S-dermatodea_contig11238.796.1 vs. uniprot
Match: A0A6T6NQS7_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A6T6NQS7_9RHOD)

HSP 1 Score: 50.8 bits (120), Expect = 4.050e-5
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:   91 LDPWRLSELLMDVGAMSVSVDDSSLGTEEEKPILHDPGTSKAFDPSVPAPSSIGRREFWGGSSRVVALFPRE 306
            +D   LS+LLM++GA+SVSV+D+  GT+ EKP+ H+P      +  +PA  ++G + +W   + V ALF  +
Sbjct:   18 VDVELLSDLLMELGAVSVSVEDALRGTDAEKPLFHEPLPGNGVEWIMPA-DAVGGKTYWPKCT-VKALFTED 87
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11238.796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJD6_ECTSI4.010e-4576.77Ribosomal protein L11 methyltransferase n=2 Tax=Ec... [more]
A0A6V1NRU4_HETAK5.880e-1038.24Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6T6NQS7_9RHOD4.050e-538.89Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11238contigS-dermatodea_contig11238:3439..5986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.8
Seed ortholog evalue1.8e-37
Seed eggNOG ortholog2880.D8LJD6
KEGG koko:K03301
KEGG TC2.A.12
EggNOG free text desc.Ribosomal protein L11 methyltransferase (PrmA)
EggNOG OGs2QQTZ@2759,COG2264@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons3
Model size314
Cds size312
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11238.796.1prot_S-dermatodea_contig11238.796.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11238 3439..5986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924193.151969-CDS-S-dermatodea_contig11238:3438..35371622924193.151969-CDS-S-dermatodea_contig11238:3438..3537Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11238 3439..3537 -
1694079082.4442685-CDS-S-dermatodea_contig11238:3438..35371694079082.4442685-CDS-S-dermatodea_contig11238:3438..3537Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11238 3439..3537 -
1622924193.1608207-CDS-S-dermatodea_contig11238:3918..40601622924193.1608207-CDS-S-dermatodea_contig11238:3918..4060Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11238 3919..4060 -
1694079082.4591246-CDS-S-dermatodea_contig11238:3918..40601694079082.4591246-CDS-S-dermatodea_contig11238:3918..4060Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11238 3919..4060 -
1622924193.1717913-CDS-S-dermatodea_contig11238:5915..59861622924193.1717913-CDS-S-dermatodea_contig11238:5915..5986Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11238 5916..5986 -
1694079082.4699194-CDS-S-dermatodea_contig11238:5915..59861694079082.4699194-CDS-S-dermatodea_contig11238:5915..5986Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11238 5916..5986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11238.796.1

>prot_S-dermatodea_contig11238.796.1 ID=prot_S-dermatodea_contig11238.796.1|Name=mRNA_S-dermatodea_contig11238.796.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
ENPQADELWWGEGQAVQSLEIGCRDTKGNVLDPWRLSELLMDVGAMSVSV
DDSSLGTEEEKPILHDPGTSKAFDPSVPAPSSIGRREFWGGSSRVVALFP
REWD
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mRNA from alignment at S-dermatodea_contig11238:3439..5986-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11238.796.1 ID=mRNA_S-dermatodea_contig11238.796.1|Name=mRNA_S-dermatodea_contig11238.796.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2548bp|location=Sequence derived from alignment at S-dermatodea_contig11238:3439..5986- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGAATCCGCAGGCGGATGAGCTGTGGTGGGGCGAAGGCCAGGCGGTGCA
GTCGCTCGAGATTGGGTGCAGGTGAGGTTCAGAGCTAGGCCAGAGCTGCT
GTGGAAGCAGCAACCCGACGCATTGATGGCGGTTTCCACAAATCCTTGAC
CCATGCGCCCGTTGCATTTGAACGCCGATTCGATCTGTTTCTGAGAACAG
CAGCGTGCTGGACCTCTGAGAGCCAAATCCAGCGTTGTGCAAGATGTGTT
GGTACAGATAATCCTGCCGCTGTATTTGGTCTAACGCCTCATGCTCTGGC
GCCCTCCTCACTTGCATGGATACCTCGCCACCCTGTCGCGTCTCCCTCTC
GACGGAAGGCCTCCTCTCGACACTTTCCGGTACACAACCCTCTTTCAGAG
CTCTGTATTTATTGTAAGGGTACATCGTTAGGTCTTTGGTCATACAATCT
AAATGTAACTGTGCGACATGATGAGCAGTTTACTCCCACGGGCACCCCGT
GCCGCACGGAGGTCCGAAACGATTCCGCACAGCCTTGTTGTTGTTGGCAA
CGAGAAACTACCTGTAGGAATCCGCGAGACGGCCACAGAGCCCGAAAGAC
CTCACAATGGTTTCAGCCTTTAGAATCAGTTGATCGAGGAGTTGGATAGA
GCGGATTTGCCAGGGCACAGGAAAAAAAATCGGCCTCGCGTTGTTGTTGC
TGTTGGCACACACATGATAGACTTGCTTTTCCGAGGTCCGTCTGTGGTCA
CAAGGGATCATCACATCTCTCTCCGGTTCTCACCTTTGGTTTTTATCGTG
CATTGGATTCGGCACTCCCACAGCTCGCCGATTTCTCGGATTTTTTCAAG
GCTTGTCACGAGGGTCAGGAATTCACTATGGGGTGGAAATGGAAATTCCA
GAAATGACTGGGGCGGAATGGAGTGGTGACTAGTGACTGGGGTGGAAAAC
TGTTCTCGGGTGGTATTATGGTTTTTCAGTTTCAGAATGGAATGGAATGG
TTTTGAACTGGGGCTATAATCACTCGACTGGAAATGGGGAATGGGGTTTC
GTTTTTGCACTGGGGTAGAATGGTATGGAACTGGGGCAAATTTTGCGCTG
GGGTGGGGTCTGGAATTACATCAAAATAATGGGATGGAATAGTTTTGCAG
CTGGGGCGAATTCTACGTTTGGGGTGGTTACTGGAAAATCGTGCTTGCTC
TGGGGCGGACTGGAAATGGAACTGGGGACAGTTTCCCAACTGGAATGGGG
GTATGGAAATGGCTTTGGCCCTGGGATGGTATGGAACTGGAACAGGGGCG
ATTTGTACGCTGGGATGGTTCCTGGGATTTCGTGTTGACACTGGGGCGGA
CTGGAACTGGAACTGAGGTCAATTCCCCAACTGGTCTGGAAGTATGGAAA
CGGCTTTGGCCCTGGGATGGTATGGAACTGGAACTGGGGCCAGTTTCCCA
ACTGGAACGGGGGTATGGAAAAGGCTTTTGGCCCTGAGATGGTATGGAAC
TGGAAATGGGGCCGGAAACGGCTGGGTTGCCCCATAAACCATGGGTTTTC
CATGGTTTCCCCATATGGAAATTTTCCATTCGACCCTCGTGACAAGCCTT
GGATTTTTTGCTTACTCACGCTCTCGCGCTTTCCCCGGCAGAGGTAGAGA
AAACAAAAAAATGTCGACTCTGCCGGGATTTGAACCCGGGTCCTCCTCTA
ACTGGGCTGTTGGTCAACCAGTTCAACCACGGGGCGCGCGGTGTGTCTCC
GCTTTTTCAAGAGGCACTGGCCACACTTCGGGCTCGCCTTGTGGTGCGCC
CACAAGTGCCTCCGCAAACCAACACGAGCGAAAAGCCGAACCGTGAGCAT
CGCGAACGCCCTGCCCTCCAAAACCGCTTGATTTTTCAACCTCTGGGTTA
TCTGCACCGTGTGTTTCGCGCGGAAGGGATACGAAGGGCAATGTGCTGGA
CCCGTGGCGGTTGAGTGAGCTCCTCATGGACGTGGGGGCGATGTCGGTGT
CCGTCGACGATTCCTCCCTCGGAACAGAAGAGGAAAAACCCATCCTGCAC
GACCCGGGCACCTCTAAGGTAACCAGCCCTCTCTACTTGCACTGCAGCTG
CGTGCTACTGTTGCGTGCTGACTAAATATGAGGTATGGGAACACAGAGGC
AGCGGGCTCAGGGGTGGTAGCATGTCCTGCAGCGAGCTCGTTGCGCTCCT
TCGTGGCACTGGGTTGCGTTTACAACTCACACATTCTGCTGTACAGAGTT
GTACACATATTAGTACTCTATCCTAAGGAGTTTACAGCCGGCTTTGTCGC
TTTCGCGCCAACCGGACGCAGGTATATTCCTAGTCAGGGCACAATGTCAA
ATATCCACGCCTCAGCGTTTGACCCTAGCCCAGCTATGGCCCCGTTGACT
TGCTGGCTCTTACGATTTGTTGTTTTATTTCGTCGGTGTAACGCGGCAGG
CATTCGATCCCAGCGTTCCTGCTCCCTCCTCCATCGGGCGGAGAGAGTTT
TGGGGGGGCAGCAGCCGTGTCGTGGCGCTCTTTCCTCGAGAATGGGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11238:3439..5986-

>mRNA_S-dermatodea_contig11238.796.1 ID=mRNA_S-dermatodea_contig11238.796.1|Name=mRNA_S-dermatodea_contig11238.796.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig11238:3439..5986- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGAATCCGCAGGCGGATGAGCTGTGGTGGGGCGAAGGCCAGGCGGTGCA
GTCGCTCGAGATTGGGTGCAGGAGAATCCGCAGGCGGATGAGCTGTGGTG
GGGCGAAGGCCAGGCGGTGCAGTCGCTCGAGATTGGGTGCAGGGATACGA
AGGGCAATGTGCTGGACCCGTGGCGGTTGAGTGAGCTCCTCATGGACGTG
GGGGCGATGTCGGTGTCCGTCGACGATTCCTCCCTCGGAACAGAAGAGGA
AAAACCCATCCTGCACGACCCGGGCACCTCTAAGGGATACGAAGGGCAAT
GTGCTGGACCCGTGGCGGTTGAGTGAGCTCCTCATGGACGTGGGGGCGAT
GTCGGTGTCCGTCGACGATTCCTCCCTCGGAACAGAAGAGGAAAAACCCA
TCCTGCACGACCCGGGCACCTCTAAGGCATTCGATCCCAGCGTTCCTGCT
CCCTCCTCCATCGGGCGGAGAGAGTTTTGGGGGGGCAGCAGCCGTGTCGT
GGCGCTCTTTCCTCGAGAATGGGACGCATTCGATCCCAGCGTTCCTGCTC
CCTCCTCCATCGGGCGGAGAGAGTTTTGGGGGGGCAGCAGCCGTGTCGTG
GCGCTCTTTCCTCGAGAATGGGAC
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