mRNA_S-dermatodea_contig11230.793.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11230.793.1
Unique NamemRNA_S-dermatodea_contig11230.793.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11230.793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11230contigS-dermatodea_contig11230:4101..4500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size400
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11230.793.1prot_S-dermatodea_contig11230.793.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11230 4160..4489 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924192.8781354-UTR-S-dermatodea_contig11230:4100..41591622924192.8781354-UTR-S-dermatodea_contig11230:4100..4159Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11230 4101..4159 +
1694079082.2849126-UTR-S-dermatodea_contig11230:4100..41591694079082.2849126-UTR-S-dermatodea_contig11230:4100..4159Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11230 4101..4159 +
1622924192.89849-UTR-S-dermatodea_contig11230:4489..45001622924192.89849-UTR-S-dermatodea_contig11230:4489..4500Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11230 4490..4500 +
1694079082.3012934-UTR-S-dermatodea_contig11230:4489..45001694079082.3012934-UTR-S-dermatodea_contig11230:4489..4500Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11230 4490..4500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924192.8885877-CDS-S-dermatodea_contig11230:4159..44891622924192.8885877-CDS-S-dermatodea_contig11230:4159..4489Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11230 4160..4489 +
1694079082.293133-CDS-S-dermatodea_contig11230:4159..44891694079082.293133-CDS-S-dermatodea_contig11230:4159..4489Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11230 4160..4489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11230.793.1

>prot_S-dermatodea_contig11230.793.1 ID=prot_S-dermatodea_contig11230.793.1|Name=mRNA_S-dermatodea_contig11230.793.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=110bp
MDTPRPRYGTNNGRFFFFPAEKTDHAVGVVAALPRATSLKGMGATLHKVP
QDGERGTPPAEIPSSPGWAAFTALCAVQPTKPRQNNCYKVHQTKRKQKKF
NARLGPVRL*
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mRNA from alignment at S-dermatodea_contig11230:4101..4500+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11230.793.1 ID=mRNA_S-dermatodea_contig11230.793.1|Name=mRNA_S-dermatodea_contig11230.793.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=400bp|location=Sequence derived from alignment at S-dermatodea_contig11230:4101..4500+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGTAACCTAACCTAACAAGCATCTCGCGTGCAAGCACAAAAAAATAAAA
AGCATAACAATGGACACACCTCGTCCACGATATGGAACGAACAACGGGCG
TTTTTTTTTCTTCCCAGCCGAGAAAACAGATCACGCTGTTGGGGTTGTTG
CAGCGCTCCCGAGAGCCACATCCCTTAAAGGAATGGGTGCCACGCTCCAC
AAAGTACCGCAGGATGGCGAGCGTGGAACTCCGCCGGCCGAGATTCCATC
GTCGCCGGGCTGGGCCGCATTTACCGCGCTGTGTGCTGTCCAACCAACAA
AGCCGAGACAAAATAACTGCTACAAAGTACACCAAACAAAACGAAAGCAA
AAAAAATTCAACGCGCGCCTCGGCCCGGTGCGTTTATAAAGGAAATCCAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig11230:4101..4500+

>mRNA_S-dermatodea_contig11230.793.1 ID=mRNA_S-dermatodea_contig11230.793.1|Name=mRNA_S-dermatodea_contig11230.793.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at S-dermatodea_contig11230:4101..4500+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACACACCTCGTCCACGATATGGAACGAACAACGGGCGTTTTTTTTT
CTTCCCAGCCGAGAAAACAGATCACGCTGTTGGGGTTGTTGCAGCGCTCC
CGAGAGCCACATCCCTTAAAGGAATGGGTGCCACGCTCCACAAAGTACCG
CAGGATGGCGAGCGTGGAACTCCGCCGGCCGAGATTCCATCGTCGCCGGG
CTGGGCCGCATTTACCGCGCTGTGTGCTGTCCAACCAACAAAGCCGAGAC
AAAATAACTGCTACAAAGTACACCAAACAAAACGAAAGCAAAAAAAATTC
AACGCGCGCCTCGGCCCGGTGCGTTTATAAATGGACACACCTCGTCCACG
ATATGGAACGAACAACGGGCGTTTTTTTTTCTTCCCAGCCGAGAAAACAG
ATCACGCTGTTGGGGTTGTTGCAGCGCTCCCGAGAGCCACATCCCTTAAA
GGAATGGGTGCCACGCTCCACAAAGTACCGCAGGATGGCGAGCGTGGAAC
TCCGCCGGCCGAGATTCCATCGTCGCCGGGCTGGGCCGCATTTACCGCGC
TGTGTGCTGTCCAACCAACAAAGCCGAGACAAAATAACTGCTACAAAGTA
CACCAAACAAAACGAAAGCAAAAAAAATTCAACGCGCGCCTCGGCCCGGT
GCGTTTATAA
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