mRNA_S-dermatodea_contig11222.788.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11222.788.1
Unique NamemRNA_S-dermatodea_contig11222.788.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11222.788.1 vs. uniprot
Match: D7FK08_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK08_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.950e-33
Identity = 70/107 (65.42%), Postives = 80/107 (74.77%), Query Frame = 1 
Query:    4 PQAAAYFGIFDGHGGADVALRLQDVLHCRVLGDPLFPSDIPQAIVNGCKASDLECLEIAHGKRPMGTEKQDKSEGTSTSLKQQM-TVQDFSGAVAVVAIFYRP-APP 318
            P+AA+YFG+FDGHGGADVA RLQD LH RVL  P FPSDIPQAI +GC   D ECLEI+  KR MG E  +KS   + SLK+Q  T Q FSGAVAV+AI +RP APP
Sbjct: 2389 PEAASYFGLFDGHGGADVATRLQDALHLRVLNSPNFPSDIPQAICDGCLEMDQECLEISDSKRQMGPEVVEKSTFAANSLKKQKKTEQTFSGAVAVMAIVHRPPAPP 2495
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BLAST of mRNA_S-dermatodea_contig11222.788.1 vs. uniprot
Match: Q23AG9_TETTS (Serine/threonine phosphatase 2C n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q23AG9_TETTS)

HSP 1 Score: 54.3 bits (129), Expect = 5.720e-6
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   16 AYFGIFDGHGGADVALRLQDVLHCRVLGDPLFPSDIPQAIVNGCKASDLECLEIAHGKRP 195
            A+FGI+DGHGGA  A  L+D LH  V+ D  FP +  QA++NG   ++ E +E A    P
Sbjct:  265 AFFGIYDGHGGAFCADFLRDHLHQYVISDENFPENPRQALINGFAKAEKEFIERAEQFNP 324
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BLAST of mRNA_S-dermatodea_contig11222.788.1 vs. uniprot
Match: A0A835YK53_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK53_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.430e-5
Identity = 33/111 (29.73%), Postives = 53/111 (47.75%), Query Frame = 1 
Query:   13 AAYFGIFDGHGGADVALRLQDVLHCRVLGDPLFPSDIPQAIVNGCKASDLECLEIAHGKRPMGTEKQDKSEGTSTSLKQQMTVQDF-------------SGAVAVVAIFYR 306
            AAYFG++DGHGG  VA  LQ  LH  ++    F  D  +AI+      D++CL   +  R      Q+ +   + +  ++ T +               +G+VAV+A+ YR
Sbjct:  114 AAYFGVYDGHGGDSVAEALQAQLHRAIVTHQAFHEDRSRAILEATYDVDMQCLSKDYAAR------QETARNAAAAALERSTSKPSLLPALLAPSGARTAGSVAVLAVVYR 218
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BLAST of mRNA_S-dermatodea_contig11222.788.1 vs. uniprot
Match: UPI00053C4B4C (probable protein phosphatase 2C 11 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C4B4C)

HSP 1 Score: 51.2 bits (121), Expect = 6.150e-5
Identity = 26/62 (41.94%), Postives = 34/62 (54.84%), Query Frame = 1 
Query:    7 QAAAYFGIFDGHGGADVALRLQDVLHCRVLGDPLFPSDIPQAIVNGCKASDLECLEIAHGKR 192
            Q  A+FG+FDGHGGA  A  L+D L   ++  P F  D   AIV   K +D E L    G++
Sbjct:  180 QMVAFFGVFDGHGGARTAAYLKDNLFKNLISHPGFIKDTKTAIVEAFKQTDEEYLNEEKGQQ 241
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11222.788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FK08_ECTSI1.950e-3365.42cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
Q23AG9_TETTS5.720e-645.00Serine/threonine phosphatase 2C n=1 Tax=Tetrahymen... [more]
A0A835YK53_9STRA2.430e-529.73Phosphatase 2C-like domain-containing protein n=1 ... [more]
UPI00053C4B4C6.150e-541.94probable protein phosphatase 2C 11 n=1 Tax=Tarenay... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11222contigS-dermatodea_contig11222:2711..3997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue8.1e-29
Seed eggNOG ortholog2880.D7FK08
KEGG koko:K07359
KEGG Pathwayko04140,ko04152,ko04211,ko04920,ko04921,ko05034,map04140,map04152,map04211,map04920,map04921,map05034
EggNOG free text desc.peptidyl-threonine phosphorylation
EggNOG OGsKOG0585@1,KOG0585@2759
EC2.7.11.17
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons4
Model size379
Cds size378
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11222.788.1prot_S-dermatodea_contig11222.788.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11222 2712..3997 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924192.5801513-CDS-S-dermatodea_contig11222:2711..28821622924192.5801513-CDS-S-dermatodea_contig11222:2711..2882Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11222 2712..2882 -
1694079082.0775764-CDS-S-dermatodea_contig11222:2711..28821694079082.0775764-CDS-S-dermatodea_contig11222:2711..2882Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11222 2712..2882 -
1622924192.5902157-CDS-S-dermatodea_contig11222:3064..31421622924192.5902157-CDS-S-dermatodea_contig11222:3064..3142Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11222 3065..3142 -
1694079082.0927474-CDS-S-dermatodea_contig11222:3064..31421694079082.0927474-CDS-S-dermatodea_contig11222:3064..3142Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11222 3065..3142 -
1622924192.6068335-CDS-S-dermatodea_contig11222:3440..35321622924192.6068335-CDS-S-dermatodea_contig11222:3440..3532Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11222 3441..3532 -
1694079082.1031337-CDS-S-dermatodea_contig11222:3440..35321694079082.1031337-CDS-S-dermatodea_contig11222:3440..3532Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11222 3441..3532 -
1622924192.6165853-CDS-S-dermatodea_contig11222:3960..39971622924192.6165853-CDS-S-dermatodea_contig11222:3960..3997Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11222 3961..3997 -
1694079082.1129978-CDS-S-dermatodea_contig11222:3960..39971694079082.1129978-CDS-S-dermatodea_contig11222:3960..3997Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11222 3961..3997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11222.788.1

>prot_S-dermatodea_contig11222.788.1 ID=prot_S-dermatodea_contig11222.788.1|Name=mRNA_S-dermatodea_contig11222.788.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=126bp
PPQAAAYFGIFDGHGGADVALRLQDVLHCRVLGDPLFPSDIPQAIVNGCK
ASDLECLEIAHGKRPMGTEKQDKSEGTSTSLKQQMTVQDFSGAVAVVAIF
YRPAPPQNDSSASGCPPIGSDCPAGP
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mRNA from alignment at S-dermatodea_contig11222:2711..3997-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11222.788.1 ID=mRNA_S-dermatodea_contig11222.788.1|Name=mRNA_S-dermatodea_contig11222.788.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1287bp|location=Sequence derived from alignment at S-dermatodea_contig11222:2711..3997- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCCACAGGCTGCGGCATACTTCGGAATATTCGACGGTGCGGGAAACAG
ATCCGCGATGTTTGTTCAGGCTCGTTCAGTAGGTCGAATGTGTCGATTCT
GTCTGTGACGTGGTTTCTCCAATAATCCTTGTTCGGTCAGAATTCTTCCG
CAATTTTTGTAGAGAATTCGCACACTGGAGAGGAAAGAACGTGCTCATTA
ACCTTTATGTACCCCCAAGGGTCCTCCCAAAAAAGTACTCAAAAATCGTC
TTCCTCCAGATTCCGAAGCTCGCCATCGCAATTCGATCTAGCGTCCAGCT
ATATAAGAAAATCAATCTGCAGCTGGAGATATTGTCAACGGACTGAAGCA
ACCTCTTTCCATCGCCCGTCCCTTCCTTGCGCGTTGCCGTGTTTTACCCT
CCCGGACATCCGCGGTTACCATATGCCATGCGCCATGCCTTCGCTCCGTC
ATCAACACCCCCAAGGCCATGGTGGGGCTGATGTAGCGCTTCGCCTTCAG
GACGTCCTGCACTGCAGGGTGCTGGGAGACCCTCTCTTCCCGTCAGATAT
ACCACAGGTGCGAACATATTCTCACGGCAGAATGCCGGTACGTTAGCGGA
AAACTACACGATGCACCTCCCCGCCATCCCGCGTGGCAACAAGGTGGAGA
TCTACGCACGTTCCTGTGCTGAAATCGCGCATCACTGAACTGGTGAAGCA
AGCGAGATCGCCCTTAGAGACACCGGTCTTTACAGGGAAAAAACTTTTTC
CGCATATTATAAAACAGTTATGCAGTACCTTGTGTTCCCCGTACTACCGT
CCTACTCTTACGGCCCTGTTATTTTCTCTCCTTCGAATCGTGTGCAAACG
GAAAGGCGATCGTGAACGGATGCAAGGCTTCGGACTTGGAGTGCCTGGAA
ATTGCCCACGGCAAGCGCCCAATGGGGACCGAGGTGCGATCGTGTGTAGT
ATTTTTTCGGGTGCCCGCCGCTAGACGGGGACGACGGACCAGTGACGGGA
ACAACGTATTGTAGCTGCCTCTGGAAGGCCTCTGTCGGGTCACTCGGCTA
ACCATGTGATAATCTTGATTTCTCGCCGATTCTTCGCCCGGCCTACCCTC
TCGCTTCCATGGCAGAAGCAAGACAAGTCAGAGGGCACGTCTACGTCCCT
CAAGCAACAGATGACGGTTCAAGACTTTTCCGGCGCTGTTGCGGTGGTTG
CAATATTTTACCGCCCCGCCCCTCCACAGAACGACTCGTCTGCGTCGGGT
TGTCCTCCGATCGGAAGTGATTGCCCCGCCGGTCCGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11222:2711..3997-

>mRNA_S-dermatodea_contig11222.788.1 ID=mRNA_S-dermatodea_contig11222.788.1|Name=mRNA_S-dermatodea_contig11222.788.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at S-dermatodea_contig11222:2711..3997- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCCACAGGCTGCGGCATACTTCGGAATATTCGACGCCGCCACAGGCTG
CGGCATACTTCGGAATATTCGACGGCCATGGTGGGGCTGATGTAGCGCTT
CGCCTTCAGGACGTCCTGCACTGCAGGGTGCTGGGAGACCCTCTCTTCCC
GTCAGATATACCACAGGCCATGGTGGGGCTGATGTAGCGCTTCGCCTTCA
GGACGTCCTGCACTGCAGGGTGCTGGGAGACCCTCTCTTCCCGTCAGATA
TACCACAGGCGATCGTGAACGGATGCAAGGCTTCGGACTTGGAGTGCCTG
GAAATTGCCCACGGCAAGCGCCCAATGGGGACCGAGGCGATCGTGAACGG
ATGCAAGGCTTCGGACTTGGAGTGCCTGGAAATTGCCCACGGCAAGCGCC
CAATGGGGACCGAGAAGCAAGACAAGTCAGAGGGCACGTCTACGTCCCTC
AAGCAACAGATGACGGTTCAAGACTTTTCCGGCGCTGTTGCGGTGGTTGC
AATATTTTACCGCCCCGCCCCTCCACAGAACGACTCGTCTGCGTCGGGTT
GTCCTCCGATCGGAAGTGATTGCCCCGCCGGTCCGAAGCAAGACAAGTCA
GAGGGCACGTCTACGTCCCTCAAGCAACAGATGACGGTTCAAGACTTTTC
CGGCGCTGTTGCGGTGGTTGCAATATTTTACCGCCCCGCCCCTCCACAGA
ACGACTCGTCTGCGTCGGGTTGTCCTCCGATCGGAAGTGATTGCCCCGCC
GGTCCG
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