mRNA_S-dermatodea_contig11222.787.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11222.787.1
Unique NamemRNA_S-dermatodea_contig11222.787.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11222.787.1 vs. uniprot
Match: A0A835YK53_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK53_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.920e-18
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 ANVGDCRAVLCRAGKAVVLTRDHTPSVPSEAARIEAAGGFVSRSRVNGILGVSRSFGDIHCK 186
            A+VGDCR V+ R G+AV LT DH P+   EA R+EAAGG+VSR  VNG+L V+RSFGDIHCK
Sbjct:  230 AHVGDCRCVVGRGGRAVALTSDHKPARKDEAQRVEAAGGYVSRGCVNGVLRVTRSFGDIHCK 291
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BLAST of mRNA_S-dermatodea_contig11222.787.1 vs. uniprot
Match: A0A6H5L844_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L844_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.980e-17
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    4 NVGDCRAVLCRAGKAVVLTRDHTPSVPSEAARIEAAGGFVSRSRVNGILGVSRSFGDIHCK 186
            NVGDCRAVLCR G A+ LT DH PS   E AR++ AGG++SR R+NGILGV+R+FGDI  K
Sbjct: 1058 NVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYISRDRLNGILGVTRAFGDIAFK 1118
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BLAST of mRNA_S-dermatodea_contig11222.787.1 vs. uniprot
Match: D8LIK7_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK7_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.990e-17
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    4 NVGDCRAVLCRAGKAVVLTRDHTPSVPSEAARIEAAGGFVSRSRVNGILGVSRSFGDIHCK 186
            NVGDCRAVLCR G A+ LT DH PS   E AR++ AGG++SR R+NGILGV+R+FGDI  K
Sbjct: 2114 NVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYISRDRLNGILGVTRAFGDIAFK 2174
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BLAST of mRNA_S-dermatodea_contig11222.787.1 vs. uniprot
Match: E9I416_DAPPU (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9I416_DAPPU)

HSP 1 Score: 73.9 bits (180), Expect = 5.300e-16
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 ANVGDCRAVLCRAGKAVVLTRDHTPSVPSEAARIEAAGGFVSRSRVNGILGVSRSFGD 174
            AN+GD RAVL R+  AV L+ DH P +PSE  RIE AGG+V   RVNG LG+SRSFGD
Sbjct:   19 ANIGDSRAVLSRSDTAVPLSTDHKPDLPSERNRIEKAGGYVKEGRVNGSLGLSRSFGD 76
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BLAST of mRNA_S-dermatodea_contig11222.787.1 vs. uniprot
Match: A0A812NQS4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812NQS4_9DINO)

HSP 1 Score: 79.7 bits (195), Expect = 6.130e-16
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 ANVGDCRAVLCRAGKAVVLTRDHTPSVPSEAARIEAAGGFVSRSRVNGILGVSRSFGDIHCK 186
            AN GDCRAVL   G AV LT+DH P V +E ARIEAAGG+++  R+NG+LGVSR+FGD   K
Sbjct: 1007 ANAGDCRAVLSHEGLAVNLTQDHKPKVQAEKARIEAAGGWIANGRLNGVLGVSRAFGDAEHK 1068
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BLAST of mRNA_S-dermatodea_contig11222.787.1 vs. uniprot
Match: A0A485LM26_9STRA (cGMP-dependent protein kinase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LM26_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.560e-15
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 ANVGDCRAVLCRAGKAVVLTRDHTPSVPSEAARIEAAGGFVSRSRVNGILGVSRSFGD 174
            ANVGDCR VLCRAG A+ LT DH  + P E ARIEAAGGFV   R++GIL +SR+FGD
Sbjct: 1280 ANVGDCRGVLCRAGDAMDLTVDHKANNPLEKARIEAAGGFVHNGRLDGILAISRAFGD 1337
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BLAST of mRNA_S-dermatodea_contig11222.787.1 vs. uniprot
Match: A0A813FD09_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FD09_POLGL)

HSP 1 Score: 78.2 bits (191), Expect = 2.030e-15
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 ANVGDCRAVLCRAGKAVVLTRDHTPSVPSEAARIEAAGGFVSRSRVNGILGVSRSFGD 174
            ANVGD RA+LCRAG+AV L+ DH PS P EA RIE AGGFVS  RV G L VSR+FGD
Sbjct:  288 ANVGDSRAILCRAGRAVQLSLDHKPSRPDEAKRIEEAGGFVSFHRVLGRLAVSRAFGD 345
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BLAST of mRNA_S-dermatodea_contig11222.787.1 vs. uniprot
Match: A0A6G0XP84_9STRA (cGMP-dependent protein kinase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XP84_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.130e-15
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 ANVGDCRAVLCRAGKAVVLTRDHTPSVPSEAARIEAAGGFVSRSRVNGILGVSRSFGD 174
            ANVGDCR VLCRAG A+ LT DH  + P+E  RIEAAGGFV   R++GIL +SR+FGD
Sbjct: 1215 ANVGDCRGVLCRAGDAIDLTVDHKANNPAEKDRIEAAGGFVHNGRLDGILAISRAFGD 1272
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BLAST of mRNA_S-dermatodea_contig11222.787.1 vs. uniprot
Match: A0A813JFY6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JFY6_POLGL)

HSP 1 Score: 78.2 bits (191), Expect = 2.140e-15
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 ANVGDCRAVLCRAGKAVVLTRDHTPSVPSEAARIEAAGGFVSRSRVNGILGVSRSFGD 174
            ANVGD RA+LCRAG+AV L+ DH PS P EA RIE AGGFVS  RV G L VSR+FGD
Sbjct: 1964 ANVGDSRAILCRAGRAVQLSLDHKPSRPDEAKRIEEAGGFVSFHRVLGRLAVSRAFGD 2021
[Close]
BLAST of mRNA_S-dermatodea_contig11222.787.1 vs. uniprot
Match: A0A3L6VKG0_9STRA (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VKG0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.880e-15
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 ANVGDCRAVLCRAGKAVVLTRDHTPSVPSEAARIEAAGGFVSRSRVNGILGVSRSFGD 174
            ANVGDCR VLC+ G A+ LT DH  + PSE AR+EAAGGFV   R++GIL VSR+FGD
Sbjct:  487 ANVGDCRGVLCQDGDAIDLTIDHKANNPSEKARVEAAGGFVHNGRLDGILAVSRAFGD 544
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11222.787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YK53_9STRA2.920e-1866.13Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A6H5L844_9PHAE1.980e-1765.57PPM-type phosphatase domain-containing protein n=1... [more]
D8LIK7_ECTSI1.990e-1765.57cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
E9I416_DAPPU5.300e-1663.79PPM-type phosphatase domain-containing protein (Fr... [more]
A0A812NQS4_9DINO6.130e-1662.90Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A485LM26_9STRA1.560e-1567.24cGMP-dependent protein kinase n=1 Tax=Aphanomyces ... [more]
A0A813FD09_POLGL2.030e-1570.69Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A6G0XP84_9STRA2.130e-1565.52cGMP-dependent protein kinase n=1 Tax=Aphanomyces ... [more]
A0A813JFY6_POLGL2.140e-1570.69Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A3L6VKG0_9STRA2.880e-1565.52PPM-type phosphatase domain-containing protein (Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11222contigS-dermatodea_contig11222:2469..2654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog2880.D8LIK7
Preferred namespnA
KEGG koko:K01090,ko:K07359,ko:K14803,ko:K17500
KEGG Pathwayko04140,ko04152,ko04211,ko04920,ko04921,ko05034,map04140,map04152,map04211,map04920,map04921,map05034
GOsGO:0000166,GO:0000287,GO:0001101,GO:0001726,GO:0001882,GO:0001883,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0019001,GO:0019219,GO:0019222,GO:0019538,GO:0030145,GO:0030154,GO:0031252,GO:0031323,GO:0031326,GO:0031347,GO:0032101,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033554,GO:0033993,GO:0035639,GO:0036094,GO:0036211,GO:0042221,GO:0042578,GO:0042995,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043618,GO:0043620,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0048583,GO:0048856,GO:0048869,GO:0050688,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061392,GO:0061416,GO:0065007,GO:0071214,GO:0071470,GO:0071472,GO:0071704,GO:0080090,GO:0080134,GO:0097159,GO:0097305,GO:0097367,GO:0104004,GO:0120025,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.peptidyl-threonine phosphorylation
EggNOG OGsCOG0631@1,KOG0585@1,KOG0585@2759,KOG0698@2759
EC2.7.11.17,3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924192.5507333-CDS-S-dermatodea_contig11222:2468..26541622924192.5507333-CDS-S-dermatodea_contig11222:2468..2654Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11222 2469..2654 -
1694079082.0631194-CDS-S-dermatodea_contig11222:2468..26541694079082.0631194-CDS-S-dermatodea_contig11222:2468..2654Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11222 2469..2654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11222.787.1prot_S-dermatodea_contig11222.787.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11222 2469..2654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11222.787.1

>prot_S-dermatodea_contig11222.787.1 ID=prot_S-dermatodea_contig11222.787.1|Name=mRNA_S-dermatodea_contig11222.787.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=62bp
ANVGDCRAVLCRAGKAVVLTRDHTPSVPSEAARIEAAGGFVSRSRVNGIL
GVSRSFGDIHCK
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mRNA from alignment at S-dermatodea_contig11222:2469..2654-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11222.787.1 ID=mRNA_S-dermatodea_contig11222.787.1|Name=mRNA_S-dermatodea_contig11222.787.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at S-dermatodea_contig11222:2469..2654- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGAACGTGGGAGACTGCCGTGCGGTGCTCTGTCGGGCAGGCAAGGCGGT
CGTGTTAACGCGCGACCACACCCCTTCCGTGCCATCTGAGGCGGCACGCA
TTGAGGCGGCCGGCGGATTCGTGTCTCGCAGCCGAGTTAATGGGATTCTC
GGCGTTTCTCGGTCTTTTGGGGACATACACTGCAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11222:2469..2654-

>mRNA_S-dermatodea_contig11222.787.1 ID=mRNA_S-dermatodea_contig11222.787.1|Name=mRNA_S-dermatodea_contig11222.787.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at S-dermatodea_contig11222:2469..2654- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGAACGTGGGAGACTGCCGTGCGGTGCTCTGTCGGGCAGGCAAGGCGGT
CGTGTTAACGCGCGACCACACCCCTTCCGTGCCATCTGAGGCGGCACGCA
TTGAGGCGGCCGGCGGATTCGTGTCTCGCAGCCGAGTTAATGGGATTCTC
GGCGTTTCTCGGTCTTTTGGGGACATACACTGCAAGGCGAACGTGGGAGA
CTGCCGTGCGGTGCTCTGTCGGGCAGGCAAGGCGGTCGTGTTAACGCGCG
ACCACACCCCTTCCGTGCCATCTGAGGCGGCACGCATTGAGGCGGCCGGC
GGATTCGTGTCTCGCAGCCGAGTTAATGGGATTCTCGGCGTTTCTCGGTC
TTTTGGGGACATACACTGCAAG
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