mRNA_S-dermatodea_contig1122.784.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1122.784.1
Unique NamemRNA_S-dermatodea_contig1122.784.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1122.784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1122contigS-dermatodea_contig1122:9031..10511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size510
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1122.784.1prot_S-dermatodea_contig1122.784.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1122 9031..10511 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924192.4630065-CDS-S-dermatodea_contig1122:9030..92101622924192.4630065-CDS-S-dermatodea_contig1122:9030..9210Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 9031..9210 -
1694079081.9894857-CDS-S-dermatodea_contig1122:9030..92101694079081.9894857-CDS-S-dermatodea_contig1122:9030..9210Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 9031..9210 -
1622924192.4723692-CDS-S-dermatodea_contig1122:9469..95681622924192.4723692-CDS-S-dermatodea_contig1122:9469..9568Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 9470..9568 -
1694079082.0055003-CDS-S-dermatodea_contig1122:9469..95681694079082.0055003-CDS-S-dermatodea_contig1122:9469..9568Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 9470..9568 -
1622924192.4812968-CDS-S-dermatodea_contig1122:9856..100101622924192.4812968-CDS-S-dermatodea_contig1122:9856..10010Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 9857..10010 -
1694079082.0216386-CDS-S-dermatodea_contig1122:9856..100101694079082.0216386-CDS-S-dermatodea_contig1122:9856..10010Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 9857..10010 -
1622924192.490283-CDS-S-dermatodea_contig1122:10434..105111622924192.490283-CDS-S-dermatodea_contig1122:10434..10511Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 10435..10511 -
1694079082.035833-CDS-S-dermatodea_contig1122:10434..105111694079082.035833-CDS-S-dermatodea_contig1122:10434..10511Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 10435..10511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1122.784.1

>prot_S-dermatodea_contig1122.784.1 ID=prot_S-dermatodea_contig1122.784.1|Name=mRNA_S-dermatodea_contig1122.784.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=170bp
MEDSGLTVLSDAEREKLLDLVLSRLIVSDGVLAMEVGPEPQARDHSGPSR
GAGERQCKIGDNPLHCESRSLEGVAVETVVKLTGLGDLLIRTQTLPPEPK
RIEDICARSEDWAFLGFPSLPWLDQHRKVYLAQQLTRCISARDGSVALAI
GERVLIPQGFIPASSLRLA*
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mRNA from alignment at S-dermatodea_contig1122:9031..10511-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1122.784.1 ID=mRNA_S-dermatodea_contig1122.784.1|Name=mRNA_S-dermatodea_contig1122.784.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1481bp|location=Sequence derived from alignment at S-dermatodea_contig1122:9031..10511- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGGACTCGGGTCTCACCGTTCTGTCGGATGCGGAGAGGGAGAAGCT
GCTCGATTTGGTGCTGAGCAGACTCATGTGAGAATGGCAACTTGGCTAGT
ACACCACAAACGTAGAGACACCGTAACGCCAGTGCCACATGGCCGTTGTA
GATATTTGGAGTCCGCGGAAAATGCTTTGGAAGGCACCCCGCGCGCTGGC
ATCTGCACTGTGAAGCTGCAGGCTTCTTTGTGCGTAATAAACTTCCCGCG
TGTAACACCTCGTCTGCGGCAAGTGTTCGACATTCCTGAAGATCATGCTC
CGTGGTCTTTGCCATCCCCAGTCTTCTTCAACTCGTGCCCAAATTGACGA
TGAGCATTCTGCCAGAAGTTTAGTCAACACACTCCGCTTCTCGCGGCAAG
CTCTCGCTTTGTGTCTATTGCCGTCTCATCTTCCATTCTCGCTATACACC
TCTGCCACTGTTGGGTATTGTGCGTTTCGAACTCCTCCTTGGTCGGCCTA
GAGTATCAGACGGTGTGTTAGCAATGGAAGTTGGACCCGAGCCGCAAGCC
AGAGACCACTCGGGGCCGTCCAGGGGAGCTGGCGAAAGGCAGTGCAAGAT
CGGTGACAATCCGCTTCACTGTGAAAGCCGCTCCTTGGAAGGGGTCGCCG
TGGAGGTGCGACCCTGAAACTTGGTGACGAGATGCTTTCTCCCGCCATGG
TAGCAGCCATATACAAAAACGAGTGTTATGGTGATTCCGTATCGATCCCC
GTAGAGCGTTGATGCAATGGTATCCGTAGATAAAGCAGCGTCCAAGCCCT
ACCGTGCGGAAGCACATACCACTCCCACAATATAAGGGGTGTTCGTCCCA
GCGGTGGAAGAGAACGGAGACATAGATGGCTCTCGAAGCAACATTACTAA
CATTATTCATGAGAATAACCCGGCGCCTGTTTTGTTCTTGCAGACGGTGG
TGAAGCTAACCGGCCTTGGCGACTTATTAATTCGGACGCAAACACTACCG
CCTGAACCGAAGCGCATTGAAGATATTTGTGCTCGGTCTGAGGTAAGTCA
GGGGCGTACCACCGTTGAAGCGAATGCGGTGTGTGGCTCTGCTACAGTAG
TGCTTGGCATGACATTATATTATTCAGTCGGGTTCGAAGTCCTTTCCTTA
CCGTACCCTGGAGACTACCTTCGAAAAGCATTGCATCGCTGACGATGGTT
CACCTTGACGCCTTCCCGCGTAGGACGCGATAGCCGCCCCTGACGCGATG
TTAACCTGTGTTTTTCTTTTAATTCGCCGGTTTGACCCCTGCCGGGGCTA
GGACTGGGCATTCTTGGGCTTCCCTTCCCTTCCCTGGCTTGATCAACACA
GGAAAGTTTATCTTGCTCAGCAGCTGACACGCTGCATTAGTGCAAGAGAT
GGGAGTGTAGCGCTTGCGATCGGCGAGAGGGTGCTGATACCTCAAGGCTT
CATACCGGCGAGTTCCCTGAGGTTAGCGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1122:9031..10511-

>mRNA_S-dermatodea_contig1122.784.1 ID=mRNA_S-dermatodea_contig1122.784.1|Name=mRNA_S-dermatodea_contig1122.784.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at S-dermatodea_contig1122:9031..10511- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGGACTCGGGTCTCACCGTTCTGTCGGATGCGGAGAGGGAGAAGCT
GCTCGATTTGGTGCTGAGCAGACTCATATGGAGGACTCGGGTCTCACCGT
TCTGTCGGATGCGGAGAGGGAGAAGCTGCTCGATTTGGTGCTGAGCAGAC
TCATAGTATCAGACGGTGTGTTAGCAATGGAAGTTGGACCCGAGCCGCAA
GCCAGAGACCACTCGGGGCCGTCCAGGGGAGCTGGCGAAAGGCAGTGCAA
GATCGGTGACAATCCGCTTCACTGTGAAAGCCGCTCCTTGGAAGGGGTCG
CCGTGGAGAGTATCAGACGGTGTGTTAGCAATGGAAGTTGGACCCGAGCC
GCAAGCCAGAGACCACTCGGGGCCGTCCAGGGGAGCTGGCGAAAGGCAGT
GCAAGATCGGTGACAATCCGCTTCACTGTGAAAGCCGCTCCTTGGAAGGG
GTCGCCGTGGAGACGGTGGTGAAGCTAACCGGCCTTGGCGACTTATTAAT
TCGGACGCAAACACTACCGCCTGAACCGAAGCGCATTGAAGATATTTGTG
CTCGGTCTGAGACGGTGGTGAAGCTAACCGGCCTTGGCGACTTATTAATT
CGGACGCAAACACTACCGCCTGAACCGAAGCGCATTGAAGATATTTGTGC
TCGGTCTGAGGACTGGGCATTCTTGGGCTTCCCTTCCCTTCCCTGGCTTG
ATCAACACAGGAAAGTTTATCTTGCTCAGCAGCTGACACGCTGCATTAGT
GCAAGAGATGGGAGTGTAGCGCTTGCGATCGGCGAGAGGGTGCTGATACC
TCAAGGCTTCATACCGGCGAGTTCCCTGAGGTTAGCGTGAGACTGGGCAT
TCTTGGGCTTCCCTTCCCTTCCCTGGCTTGATCAACACAGGAAAGTTTAT
CTTGCTCAGCAGCTGACACGCTGCATTAGTGCAAGAGATGGGAGTGTAGC
GCTTGCGATCGGCGAGAGGGTGCTGATACCTCAAGGCTTCATACCGGCGA
GTTCCCTGAGGTTAGCGTGA
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