mRNA_S-dermatodea_contig1122.782.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1122.782.1
Unique NamemRNA_S-dermatodea_contig1122.782.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1122.782.1 vs. uniprot
Match: D7FSK5_ECTSI (N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK5_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 3.590e-89
Identity = 136/171 (79.53%), Postives = 146/171 (85.38%), Query Frame = 2
Query:   62 MGKHVFVTVGTTRFDSLIEAVDQPAVLSTLASKGFTSLTAQIGHGDHVPVFPDGNQALKCEWYRFKATLHEDMARADMVIGHAGAGSVMEALGLGKALVVVVNSALMDNHQEELADALAQRGYLRGTTPEGLAQMLIDYDDTPSARVPYPPAHPEAFAAVVDEEMCAAQRG 574
            MGKHVFVTVGTT+FDSL++AVD   VLS+L SKGFTSLT QIGHG HVP FP    AL C WYRFK TLHEDMARAD+V+ HAGAGSVMEALGLGKALVVVVN ALMDNHQEELADALAQR YLR TTPEGLA  L++ DD+PSAR PYPPA PEAFAA+VDEEM AAQ G
Sbjct:    1 MGKHVFVTVGTTKFDSLVQAVDNAVVLSSLCSKGFTSLTVQIGHGQHVPSFPVDQTALDCRWYRFKQTLHEDMARADVVVSHAGAGSVMEALGLGKALVVVVNRALMDNHQEELADALAQRNYLRATTPEGLAGALVELDDSPSARRPYPPAKPEAFAAIVDEEMRAAQDG 171          
BLAST of mRNA_S-dermatodea_contig1122.782.1 vs. uniprot
Match: A0A7R9TAB8_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TAB8_9VIRI)

HSP 1 Score: 153 bits (387), Expect = 6.930e-42
Identity = 89/165 (53.94%), Postives = 103/165 (62.42%), Query Frame = 2
Query:   62 MGKHVFVTVGTTRFDSLIEAVDQPAVLSTLASKGFTSLTAQIGHGDHVP--VFP--DGNQALKCEWYRFKATLHEDMARADMVIGHAGAGSVMEALGLGKALVVVVNSALMDNHQEELADALAQRGYLRGTTPEGLAQMLIDYDDTPSARVPYPPAHPEAFAAVV 544
            MG  VFVTVGTT FD+LI AVD+      LA +G+TS T QIG G++ P    P   G      ++YRFK +L EDMA A +V+ HAG+GS+ EAL L K LVVVVN ALMDNHQ+ELA ALA RGYL  TTP  L   L   D   SA  PYP   P A A  V
Sbjct:   16 MGGSVFVTVGTTSFDALISAVDRAETARALAERGYTSATLQIGRGEYEPHETCPACTGVPGFSVDYYRFKGSLAEDMASASLVVSHAGSGSIFEALALKKPLVVVVNEALMDNHQQELAGALASRGYLVSTTPARLVSALETLDT--SALKPYPGGDPAAVAQAV 178          
BLAST of mRNA_S-dermatodea_contig1122.782.1 vs. uniprot
Match: A0A3R7KHJ4_9STRA (N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KHJ4_9STRA)

HSP 1 Score: 153 bits (386), Expect = 7.440e-42
Identity = 84/164 (51.22%), Postives = 109/164 (66.46%), Query Frame = 2
Query:   71 HVFVTVGTTRFDSLIEAVDQPAVLSTLASKGFTSLTAQIGHGDHVP--VFPDGNQALKCEWYRFKATLHEDMARADMVIGHAGAGSVMEALGLGKALVVVVNSALMDNHQEELADALAQRGYLRGTTPEGLAQMLIDYDDTPSARVPYPPAHPEAFAAVVDEEM 556
            H FVTVGTT+F++LIEA+D  A LS L ++GF SL  QIGHGDH+P   FP     L+  +YR      +D+ RAD++I HAGAGS+M+AL L K LVVVVN+ LMDNHQ ELA+A+A++ Y   T+ +GL  +L   D   S   PYP  H +AF  +VD  M
Sbjct:    2 HAFVTVGTTKFEALIEALDTDACLSALVARGFNSLRLQIGHGDHIPRMSFP----GLELSYYRHDPQYKQDVNRADLIISHAGAGSIMDALALKKTLVVVVNTQLMDNHQTELAEAMAEQNYCLQTSVQGLEDVLETGDW--SNLQPYPQPHEQAFPDLVDTVM 159          
BLAST of mRNA_S-dermatodea_contig1122.782.1 vs. uniprot
Match: A0A662WVV2_9STRA (N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVV2_9STRA)

HSP 1 Score: 151 bits (381), Expect = 3.230e-41
Identity = 84/162 (51.85%), Postives = 110/162 (67.90%), Query Frame = 2
Query:   74 VFVTVGTTRFDSLIEAVDQPAVLSTLASKGFTSLTAQIGHGDHVP--VFPDGNQALKCEWYRFKATLHEDMARADMVIGHAGAGSVMEALGLGKALVVVVNSALMDNHQEELADALAQRGYLRGTTPEGLAQML--IDYDDTPSARVPYPPAHPEAFAAVVD 547
            VFVTVGTT+FD+L+ A+D  A L+ L ++GF+ L  QIGHG+HVP   FP     L+  +YR  A   +D+ARAD+VI HAGAGS+M+AL  GK L+VVVN+ALMDNHQ ELA+A+A R Y   T+ +GL   L   D+D       PYP A  +AF ++VD
Sbjct:    3 VFVTVGTTKFDALVRALDSDACLAALVARGFSRLRLQIGHGEHVPRASFP----GLELSYYRHDAGYKQDVARADLVISHAGAGSIMDALAAGKTLLVVVNTALMDNHQTELAEAMAGRNYCLQTSCDGLLATLESADWDHLQ----PYPQADEQAFPSLVD 156          
BLAST of mRNA_S-dermatodea_contig1122.782.1 vs. uniprot
Match: D0MVB2_PHYIT (N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MVB2_PHYIT)

HSP 1 Score: 148 bits (373), Expect = 4.990e-40
Identity = 83/163 (50.92%), Postives = 107/163 (65.64%), Query Frame = 2
Query:   71 HVFVTVGTTRFDSLIEAVDQPAVLSTLASKGFTSLTAQIGHGDHVP--VFPDGNQALKCEWYRFKATLHEDMARADMVIGHAGAGSVMEALGLGKALVVVVNSALMDNHQEELADALAQRGYLRGTTPEGLAQMLI--DYDDTPSARVPYPPAHPEAFAAVVD 547
            + FVTVGTT+FD+LI A+D  A LS+L ++GFTSL  QIGHG+H P   FP     L   +YR       D+A AD++I HAGAGS+M+ L L K L+VVVN++LMDNHQ ELA+A+A + Y   TT +GL  ML   D+D+      PYPP   +AF  VVD
Sbjct:    2 NAFVTVGTTKFDALIAALDTDACLSSLVARGFTSLRMQIGHGEHQPRATFP----GLTLSFYRHDPQYKRDVAEADLIISHAGAGSIMDGLALKKKLLVVVNTSLMDNHQAELAEAMADQNYCLQTTVQGLQSMLEAGDWDNLQ----PYPPLDEQAFPDVVD 156          
BLAST of mRNA_S-dermatodea_contig1122.782.1 vs. uniprot
Match: G4Z1Z7_PHYSP (N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z1Z7_PHYSP)

HSP 1 Score: 147 bits (370), Expect = 1.390e-39
Identity = 85/170 (50.00%), Postives = 109/170 (64.12%), Query Frame = 2
Query:   71 HVFVTVGTTRFDSLIEAVDQPAVLSTLASKGFTSLTAQIGHGDHVP--VFPDGNQALKCEWYRFKATLHEDMARADMVIGHAGAGSVMEALGLGKALVVVVNSALMDNHQEELADALAQRGYLRGTTPEGLAQMLI--DYDDTPSARVPYPPAHPEAFAAVVDEEMCAAQ 568
            H FVTVGTT+FD+LI A+D  A LS L ++GFTSL  QIGHG+HVP   FP     L+   YR      +D+ARAD+VI HAGAGS+M+ L L K LVVVVN+ALMDNHQ ELA+A+A + Y   T+ + L + L   ++DD      PYP    +AF  +VD  M   +
Sbjct:    2 HAFVTVGTTKFDALISALDTDACLSALVARGFTSLRMQIGHGEHVPRASFP----GLELSHYRHDPQYKKDVARADLVISHAGAGSIMDGLALKKKLVVVVNAALMDNHQTELAEAMADQKYCLQTSVQDLQRTLELGNWDDLQ----PYPQPDEQAFPDLVDAVMSVTE 163          
BLAST of mRNA_S-dermatodea_contig1122.782.1 vs. uniprot
Match: A0A2R5GZU5_9STRA (UDP-N-acetylglucosamine transferase subunit ALG13-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZU5_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.520e-39
Identity = 86/180 (47.78%), Postives = 110/180 (61.11%), Query Frame = 2
Query:   68 KHVFVTVGTTRFDSLIEAVDQPAVLSTLASKGFTSLTAQIGHGDHVP----VFPDGNQA-----------LKCEWYRFKATLHEDMARADMVIGHAGAGSVMEALGLGKALVVVVNSALMDNHQEELADALAQRGYLRGTTPEGLAQMLIDYDDTPSARVPYPPAHPEAFAAVVDEEMCA 562
            K VFVTVGTT FD+L+EA+D  +V+  L  +GFTSLT QIG G +VP       +G+               C +YRFK+TL  DM  A +++ HAGAGS+ME+L L K LVVVVN  LMDNHQEELA+A+  +G LR T P  +  +L D D      V YPP     F A++D+EM A
Sbjct:   15 KPVFVTVGTTSFDALVEALDDESVVQALRQRGFTSLTIQIGRGTYVPKRIGAVEEGSAEAATQPAASATFFPCRYYRFKSTLENDMKSAALIVSHAGAGSIMESLRLKKPLVVVVNEDLMDNHQEELAEAMEAKGVLRKTRPADVVALLGDAD-LDHFEV-YPPRDAGLFPALLDQEMYA 192          
BLAST of mRNA_S-dermatodea_contig1122.782.1 vs. uniprot
Match: V9EYS7_PHYPR (N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase n=11 Tax=Phytophthora TaxID=4783 RepID=V9EYS7_PHYPR)

HSP 1 Score: 146 bits (369), Expect = 1.960e-39
Identity = 82/168 (48.81%), Postives = 107/168 (63.69%), Query Frame = 2
Query:   71 HVFVTVGTTRFDSLIEAVDQPAVLSTLASKGFTSLTAQIGHGDHVP--VFPDGNQALKCEWYRFKATLHEDMARADMVIGHAGAGSVMEALGLGKALVVVVNSALMDNHQEELADALAQRGYLRGTTPEGLAQMLIDYDDTPSARVPYPPAHPEAFAAVVDEEMCAAQ 568
            H FVTVGTT+FD+LI A+D  A LS L ++GFTSL  QIGHG+H P   FP     L   +YR       D++ AD++I HAGAGS+M+ L L K LVVVVN+ALMDNHQ ELA+A+  + +   TT +GL  +L   D   ++  PYPP   +AF  +VD  M  A+
Sbjct:    2 HAFVTVGTTKFDALIVALDTDACLSALVARGFTSLRMQIGHGEHQPRATFP----GLTLSFYRHDPQYKRDVSEADLIISHAGAGSIMDGLALKKMLVVVVNTALMDNHQAELAEAMVDQKFCLATTVQGLHSVLETGDW--NSLQPYPPLDEQAFPDLVDAVMGVAE 163          
BLAST of mRNA_S-dermatodea_contig1122.782.1 vs. uniprot
Match: A0A2P4XPP1_9STRA (N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPP1_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.290e-39
Identity = 86/175 (49.14%), Postives = 112/175 (64.00%), Query Frame = 2
Query:   35 VVRVCGGLPMGKHVFVTVGTTRFDSLIEAVDQPAVLSTLASKGFTSLTAQIGHGDHVP--VFPDGNQALKCEWYRFKATLHEDMARADMVIGHAGAGSVMEALGLGKALVVVVNSALMDNHQEELADALAQRGYLRGTTPEGLAQMLI--DYDDTPSARVPYPPAHPEAFAAVVD 547
            +V +C       H FVTVGTTRFD+LI A+D    LS L ++GFTSL  QIGHG+H+P   FP     LK  +YR       D+ARAD+VI HAGAGS+M++L L K LVVVVN+ALMDNHQ ELA+A+A + +   T+ EGL  +L   ++DD  +    YP    +AF  +VD
Sbjct:   54 IVHLCISTINQMHAFVTVGTTRFDALIAALDTDLCLSALVARGFTSLRMQIGHGEHLPRVAFP----GLKMSFYRHDPQYKSDVARADLVISHAGAGSIMDSLALKKKLVVVVNTALMDNHQTELAEAMADQKFCLQTSVEGLQGVLETGNWDDLQT----YPQPDEQAFPDLVD 220          
BLAST of mRNA_S-dermatodea_contig1122.782.1 vs. uniprot
Match: W7U1N7_9STRA (N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1N7_9STRA)

HSP 1 Score: 147 bits (370), Expect = 8.670e-39
Identity = 88/207 (42.51%), Postives = 112/207 (54.11%), Query Frame = 2
Query:   68 KHVFVTVGTTRFDSLIEAVDQPAVLSTLASKGFTSLTAQIGHG-----------DHVPVFPD---------------------------------GNQALKCEWYRFKATLHEDMARADMVIGHAGAGSVMEALGLGKALVVVVNSALMDNHQEELADALAQRGYLRGTTPEGLAQMLIDYDDTPSARVPYPPAHPEAFAAVVDEEM 556
            K VFVTVGTTRFD+LIEA+  P  L  LA +GFT L  QIG             D+V    D                                 GN+A+   WYR+K +L  DM  AD++I HAGAGSVME L LGKAL+VVVN+ALMD+HQ+ELA A+ ++GYL  T P G+  ML +YD    + +  P   P    A++D+EM
Sbjct:    8 KLVFVTVGTTRFDALIEAISTPDALECLAVQGFTDLLIQIGASPEPTVGTAAGSDYVREVHDNKDTETKKGVLESRLTSLLRRRVAKRSTSGQIRGNEAVSVSWYRYKDSLRADMEAADLIISHAGAGSVMEGLNLGKALLVVVNTALMDDHQQELAHAMQKKGYLVATEPNGVVGMLQNYDQWQRSLILRPSPTPGLIPALLDQEM 214          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1122.782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSK5_ECTSI3.590e-8979.53N-acetylglucosaminyldiphosphodolichol N-acetylgluc... [more]
A0A7R9TAB8_9VIRI6.930e-4253.94Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A3R7KHJ4_9STRA7.440e-4251.22N-acetylglucosaminyldiphosphodolichol N-acetylgluc... [more]
A0A662WVV2_9STRA3.230e-4151.85N-acetylglucosaminyldiphosphodolichol N-acetylgluc... [more]
D0MVB2_PHYIT4.990e-4050.92N-acetylglucosaminyldiphosphodolichol N-acetylgluc... [more]
G4Z1Z7_PHYSP1.390e-3950.00N-acetylglucosaminyldiphosphodolichol N-acetylgluc... [more]
A0A2R5GZU5_9STRA1.520e-3947.78UDP-N-acetylglucosamine transferase subunit ALG13-... [more]
V9EYS7_PHYPR1.960e-3948.81N-acetylglucosaminyldiphosphodolichol N-acetylgluc... [more]
A0A2P4XPP1_9STRA2.290e-3949.14N-acetylglucosaminyldiphosphodolichol N-acetylgluc... [more]
W7U1N7_9STRA8.670e-3942.51N-acetylglucosaminyldiphosphodolichol N-acetylgluc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1122contigS-dermatodea_contig1122:2470..4383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score273.5
Seed ortholog evalue6.9e-71
Seed eggNOG ortholog2880.D7FSK5
Preferred nameALG13
KEGG koko:K07432,ko:K07441,ko:K10742,ko:K11855,ko:K20045
KEGG ReactionR05970
KEGG Pathwayko00510,ko00513,ko01100,ko03030,map00510,map00513,map01100,map03030
KEGG ModuleM00055
GOsGO:0003674,GO:0003824,GO:0004577,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0019898,GO:0031090,GO:0031312,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042175,GO:0042406,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043541,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070085,GO:0071704,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Glycosyltransferase family 28 C-terminal domain
EggNOG OGsCOG5017@1,KOG3349@2759
EC2.4.1.141,3.4.19.12,3.6.4.12
COG Functional cat.T
CAZyGT1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko01003,ko03032,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionbeta(1,4)-N-acetylglucosaminyltransferase
Ec32 orthologEc-04_000330.1
Exons3
Model size1049
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1122.782.1prot_S-dermatodea_contig1122.782.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1122 2531..3914 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924192.2736723-UTR-S-dermatodea_contig1122:2469..25301622924192.2736723-UTR-S-dermatodea_contig1122:2469..2530Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1122 2470..2530 +
1694079081.80874-UTR-S-dermatodea_contig1122:2469..25301694079081.80874-UTR-S-dermatodea_contig1122:2469..2530Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1122 2470..2530 +
1622924192.3214555-UTR-S-dermatodea_contig1122:3914..43831622924192.3214555-UTR-S-dermatodea_contig1122:3914..4383Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1122 3915..4383 +
1694079081.8603268-UTR-S-dermatodea_contig1122:3914..43831694079081.8603268-UTR-S-dermatodea_contig1122:3914..4383Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1122 3915..4383 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924192.2853332-CDS-S-dermatodea_contig1122:2530..26981622924192.2853332-CDS-S-dermatodea_contig1122:2530..2698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 2531..2698 +
1694079081.8249834-CDS-S-dermatodea_contig1122:2530..26981694079081.8249834-CDS-S-dermatodea_contig1122:2530..2698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 2531..2698 +
1622924192.2943814-CDS-S-dermatodea_contig1122:2963..30721622924192.2943814-CDS-S-dermatodea_contig1122:2963..3072Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 2964..3072 +
1694079081.8368053-CDS-S-dermatodea_contig1122:2963..30721694079081.8368053-CDS-S-dermatodea_contig1122:2963..3072Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 2964..3072 +
1622924192.304893-CDS-S-dermatodea_contig1122:3672..39141622924192.304893-CDS-S-dermatodea_contig1122:3672..3914Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 3673..3914 +
1694079081.8479114-CDS-S-dermatodea_contig1122:3672..39141694079081.8479114-CDS-S-dermatodea_contig1122:3672..3914Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 3673..3914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1122.782.1

>prot_S-dermatodea_contig1122.782.1 ID=prot_S-dermatodea_contig1122.782.1|Name=mRNA_S-dermatodea_contig1122.782.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=173bp
MGKHVFVTVGTTRFDSLIEAVDQPAVLSTLASKGFTSLTAQIGHGDHVPV
FPDGNQALKCEWYRFKATLHEDMARADMVIGHAGAGSVMEALGLGKALVV
VVNSALMDNHQEELADALAQRGYLRGTTPEGLAQMLIDYDDTPSARVPYP
PAHPEAFAAVVDEEMCAAQRGT*
back to top

mRNA from alignment at S-dermatodea_contig1122:2470..4383+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1122.782.1 ID=mRNA_S-dermatodea_contig1122.782.1|Name=mRNA_S-dermatodea_contig1122.782.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1914bp|location=Sequence derived from alignment at S-dermatodea_contig1122:2470..4383+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACAGAACACAGAGCACAGACAGCAGAGCACAGAGTAGTCCGCGTATGCG GAGGGCTGCCTATGGGCAAGCACGTTTTCGTGACGGTGGGCACCACGAGG TTCGATTCGCTCATCGAGGCCGTCGACCAACCGGCGGTGCTGTCCACGCT GGCCTCCAAGGGCTTCACCTCCCTCACGGCACAGATCGGCCATGGCGACC ACGTCCCCGTCTTCCCTGATGGAAATCAGGTGACACGCAGCAATGGCGAT ACTACCGAGCGATGCACCGCGAGCAGCAGATCGGGTGGATTCATGTACTG CTCTAGGATCAACCTTGCTTGATATGGTTGTGCACTATAACACTTAATAG CCGCAGAGACGCTTCGTGCGGTGCTATGATAGAACACAGTAAGTGCCAAA TGTGTGATGCCTCGAGCGCAGAGAGCTTTTTGTTGATTGCGCCGCATTGC CGCATTCTTATCGGCTGTTTTCTGTTTTGCAATACTCGCGGCAGGCGTTG AAGTGCGAGTGGTACCGCTTCAAGGCGACACTGCACGAGGATATGGCGCG AGCGGACATGGTCATCGGTCATGCCGGAGCCGGCTCTGTCATGGAAGCTC TGGGTGAGTTACGAGTGTATGCTGCTGGGGGAGGACGCCGGATCTGTTGG GTAATTTAGTGCGGTGTGCGATGTGTGTAATGAATAGTACGAAGTATGAA GGCCCGCTGCATCGGTCTATCACACACTCAGGAATTGCACCTGCGCCAGC CGATGTCAGGCACAGGGTCCACCGAACATGGCGCGATTGAGCTTTGCAAC GAAGTCCATGTTGTTCAACCAGCCGCTATGGTGACATAATTCTTGATTCG CCAAAAACAGGGGGGACATACTTCGGAACTTGGGCAGTCTAAACATCAGA TCTCACGGTCGGTACAAGTATGGTGGCGATGAATGCCGAGGTTTGCACGG TAATATCTCGAGACCGGAGTAAAATTCAGGCAACTAAACCCGCCCCGAGA CCCCGTATGTTGAGCCTGATCGACGCTGGTAGTTCGCGTCGGCTGCAAGT GCTACATGCGGGCACATTAAAAAGAAGAACGTCAAAACGACAACGGACCC CCCCCCCCCCCGACGTGCCTTTGTTCGTCGTCCGCGTTCGTCTGCTACAA CAACCAATGCTTATCGTGGACTGCCTCGTGTTTGCGTACGCCGTATCCTC CAGGGTTAGGCAAGGCTCTCGTTGTTGTCGTAAACAGCGCTCTCATGGAC AACCATCAGGAAGAGCTTGCCGACGCCTTGGCGCAGCGCGGCTACCTTCG TGGGACCACCCCCGAGGGGCTAGCGCAAATGTTGATAGACTACGACGACA CTCCGTCCGCAAGGGTGCCGTATCCACCGGCACATCCAGAGGCGTTTGCT GCTGTCGTGGACGAAGAGATGTGCGCTGCGCAGCGGGGGACATAGATATC CTCCGCATTTGTGAATTTCCGGACCAAGTTTACATACTTGAGCTCGCTGG TAAGCTAGTTGGTTTCTTGTTAGGACGATGAATCGGGTTCGCGCAAAGGA ATTGAGGGGGTGGGATATTCGTACATTGTCGAGGCAAGGTCGTGCGAAAC TCTCTTTATTTCCCCGAGGCTTCTGCGCTTGAAACTGCTACAACTCAGAT CACGTCACGACGCGCAGGCATATATTCGAAGTCAGAGGGGGAGTAGGAAG GGGCAATACACAACGACCCAGGTTTAGTAGAGCCAACGGTCAAGAGCTCC AGCCCGGGACAGGAGCAGCATTGCCCATGATTCGTTTAACGTCGTGAGAC GCAACGTGGCCAACGCCGGTGCCGGCCTCGTGTCCGTTTTCGTGTCCGGC AAGTGCCTTGTGCGACAGGAAACATGCCTGGCACTACACTCGTGCCCAGC GGAGGGGGCGGGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1122:2470..4383+

>mRNA_S-dermatodea_contig1122.782.1 ID=mRNA_S-dermatodea_contig1122.782.1|Name=mRNA_S-dermatodea_contig1122.782.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at S-dermatodea_contig1122:2470..4383+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCAAGCACGTTTTCGTGACGGTGGGCACCACGAGGTTCGATTCGCT
CATCGAGGCCGTCGACCAACCGGCGGTGCTGTCCACGCTGGCCTCCAAGG
GCTTCACCTCCCTCACGGCACAGATCGGCCATGGCGACCACGTCCCCGTC
TTCCCTGATGGAAATCAGATGGGCAAGCACGTTTTCGTGACGGTGGGCAC
CACGAGGTTCGATTCGCTCATCGAGGCCGTCGACCAACCGGCGGTGCTGT
CCACGCTGGCCTCCAAGGGCTTCACCTCCCTCACGGCACAGATCGGCCAT
GGCGACCACGTCCCCGTCTTCCCTGATGGAAATCAGGCGTTGAAGTGCGA
GTGGTACCGCTTCAAGGCGACACTGCACGAGGATATGGCGCGAGCGGACA
TGGTCATCGGTCATGCCGGAGCCGGCTCTGTCATGGAAGCTCTGGGCGTT
GAAGTGCGAGTGGTACCGCTTCAAGGCGACACTGCACGAGGATATGGCGC
GAGCGGACATGGTCATCGGTCATGCCGGAGCCGGCTCTGTCATGGAAGCT
CTGGGGTTAGGCAAGGCTCTCGTTGTTGTCGTAAACAGCGCTCTCATGGA
CAACCATCAGGAAGAGCTTGCCGACGCCTTGGCGCAGCGCGGCTACCTTC
GTGGGACCACCCCCGAGGGGCTAGCGCAAATGTTGATAGACTACGACGAC
ACTCCGTCCGCAAGGGTGCCGTATCCACCGGCACATCCAGAGGCGTTTGC
TGCTGTCGTGGACGAAGAGATGTGCGCTGCGCAGCGGGGGACATAGGGTT
AGGCAAGGCTCTCGTTGTTGTCGTAAACAGCGCTCTCATGGACAACCATC
AGGAAGAGCTTGCCGACGCCTTGGCGCAGCGCGGCTACCTTCGTGGGACC
ACCCCCGAGGGGCTAGCGCAAATGTTGATAGACTACGACGACACTCCGTC
CGCAAGGGTGCCGTATCCACCGGCACATCCAGAGGCGTTTGCTGCTGTCG
TGGACGAAGAGATGTGCGCTGCGCAGCGGGGGACATAG
back to top