mRNA_S-dermatodea_contig11202.778.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11202.778.1
Unique NamemRNA_S-dermatodea_contig11202.778.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11202.778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11202contigS-dermatodea_contig11202:6613..7468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size856
Cds size480
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924192.0138073-CDS-S-dermatodea_contig11202:6612..70921622924192.0138073-CDS-S-dermatodea_contig11202:6612..7092Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11202 6613..7092 +
1694079081.646742-CDS-S-dermatodea_contig11202:6612..70921694079081.646742-CDS-S-dermatodea_contig11202:6612..7092Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11202 6613..7092 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924192.028547-UTR-S-dermatodea_contig11202:7092..74681622924192.028547-UTR-S-dermatodea_contig11202:7092..7468Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11202 7093..7468 +
1694079081.6642911-UTR-S-dermatodea_contig11202:7092..74681694079081.6642911-UTR-S-dermatodea_contig11202:7092..7468Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11202 7093..7468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11202.778.1prot_S-dermatodea_contig11202.778.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11202 6613..7092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11202.778.1

>prot_S-dermatodea_contig11202.778.1 ID=prot_S-dermatodea_contig11202.778.1|Name=mRNA_S-dermatodea_contig11202.778.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=160bp
RLPRVLRCGAPFRLGVRACDARKPIVLLTPIKYVWRRERVGSDIHSRCGL
VAKGLCSGAWRATARGWGGEWQPARASSPSFSIGAPGWFLFGRRKKRRMD
GWLAGLGFACASAVSWCLLQYRCCCCCCCCLFFFFFFCVAVRCGAVLCVN
LFCSFPRVM*
back to top

mRNA from alignment at S-dermatodea_contig11202:6613..7468+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11202.778.1 ID=mRNA_S-dermatodea_contig11202.778.1|Name=mRNA_S-dermatodea_contig11202.778.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=856bp|location=Sequence derived from alignment at S-dermatodea_contig11202:6613..7468+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGACTCCCGAGGGTCTTGAGGTGCGGAGCACCGTTTCGGCTTGGCGTGCG
TGCTTGCGACGCGCGCAAGCCGATCGTGTTGCTTACCCCCATAAAATATG
TGTGGCGGCGCGAGAGGGTGGGGTCTGATATCCATTCGCGTTGCGGTTTG
GTCGCGAAAGGGTTGTGTTCCGGGGCTTGGCGTGCCACAGCTCGCGGATG
GGGTGGTGAATGGCAGCCAGCGCGCGCGAGCTCTCCCTCTTTCTCTATCG
GGGCGCCCGGTTGGTTTTTGTTTGGCAGAAGAAAAAAGAGAAGGATGGAT
GGCTGGCTGGCTGGGCTTGGCTTTGCGTGCGCTTCAGCTGTGTCGTGGTG
TTTGTTGCAGTATCGTTGTTGCTGTTGCTGTTGCTGTTGCCTTTTTTTTT
TCTTTTTTTTTTGCGTTGCGGTGCGGTGCGGTGCGGTGCTTTGCGTTAAT
TTGTTTTGTTCGTTTCCCCGTGTGATGTGATGGCAGCGTCGCGCGCGCGT
GCGTGCGTGTGCGTGTGACTCGAACGGAGGCACTGGTTTTGGGGGTTTCC
GCCCTTCTGCTGTCTGCCGCTTATAACGCGTGTGGCGATCGCAAGCAAGC
AAGTCAGCGCGATAAATTAGCGCCGTTCGGACGATCGGGTTGATTGCTTT
GCCTTTTCTCAGAAGGCGCGAGACTCTAGAGGAAGGCAAAAGTCACGAAA
TGCCATGGGGAGGGGTGAGCGAGTTCCGATGCGGCGGGCATCGTCGCTTG
TTTTGCCGTGGTTTTTGGGGTCTGCGAAGCCGCGCGGTTAGTCTCTTCTT
CGGGAGTCGTCGACTACTAGGGATCGGCGTCGTAGTAGCTCGAAGAGCGC
TTGGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11202:6613..7468+

>mRNA_S-dermatodea_contig11202.778.1 ID=mRNA_S-dermatodea_contig11202.778.1|Name=mRNA_S-dermatodea_contig11202.778.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at S-dermatodea_contig11202:6613..7468+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGACTCCCGAGGGTCTTGAGGTGCGGAGCACCGTTTCGGCTTGGCGTGCG
TGCTTGCGACGCGCGCAAGCCGATCGTGTTGCTTACCCCCATAAAATATG
TGTGGCGGCGCGAGAGGGTGGGGTCTGATATCCATTCGCGTTGCGGTTTG
GTCGCGAAAGGGTTGTGTTCCGGGGCTTGGCGTGCCACAGCTCGCGGATG
GGGTGGTGAATGGCAGCCAGCGCGCGCGAGCTCTCCCTCTTTCTCTATCG
GGGCGCCCGGTTGGTTTTTGTTTGGCAGAAGAAAAAAGAGAAGGATGGAT
GGCTGGCTGGCTGGGCTTGGCTTTGCGTGCGCTTCAGCTGTGTCGTGGTG
TTTGTTGCAGTATCGTTGTTGCTGTTGCTGTTGCTGTTGCCTTTTTTTTT
TCTTTTTTTTTTGCGTTGCGGTGCGGTGCGGTGCGGTGCTTTGCGTTAAT
TTGTTTTGTTCGTTTCCCCGTGTGATGTGACGACTCCCGAGGGTCTTGAG
GTGCGGAGCACCGTTTCGGCTTGGCGTGCGTGCTTGCGACGCGCGCAAGC
CGATCGTGTTGCTTACCCCCATAAAATATGTGTGGCGGCGCGAGAGGGTG
GGGTCTGATATCCATTCGCGTTGCGGTTTGGTCGCGAAAGGGTTGTGTTC
CGGGGCTTGGCGTGCCACAGCTCGCGGATGGGGTGGTGAATGGCAGCCAG
CGCGCGCGAGCTCTCCCTCTTTCTCTATCGGGGCGCCCGGTTGGTTTTTG
TTTGGCAGAAGAAAAAAGAGAAGGATGGATGGCTGGCTGGCTGGGCTTGG
CTTTGCGTGCGCTTCAGCTGTGTCGTGGTGTTTGTTGCAGTATCGTTGTT
GCTGTTGCTGTTGCTGTTGCCTTTTTTTTTTCTTTTTTTTTTGCGTTGCG
GTGCGGTGCGGTGCGGTGCTTTGCGTTAATTTGTTTTGTTCGTTTCCCCG
TGTGATGTGA
back to top