mRNA_S-dermatodea_contig11193.772.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11193.772.1
Unique NamemRNA_S-dermatodea_contig11193.772.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11193.772.1 vs. uniprot
Match: D8LU07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU07_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 3.770e-23
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    1 MQENAFLSDFFTCAGFLPFTSHSDIMGSMMKIMTSPGTLHSLGVGSYDMDEDEQFDTYPQ----VMRGGGGRLPKDPSVCIFWCAVALGGLVQGQPIEAV 288
            M+ENAFLSDFF C GFLP T+ S I  +M+KIM SP +L    V + D D++  +D   +    +      +LP+DPS C FWCA+ALG L +G PI++V
Sbjct:    1 MEENAFLSDFFGCVGFLPLTTKSHIRETMVKIMRSPASLQQSAVEA-DCDDERSYDAIARGAHWIQASERNQLPRDPSTCTFWCAIALGALAEGSPIQSV 99          
BLAST of mRNA_S-dermatodea_contig11193.772.1 vs. uniprot
Match: D8LU05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU05_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.220e-21
Identity = 46/95 (48.42%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    1 MQENAFLSDFFTCAGFLPFTSHSDIMGSMMKIMTSPGTLHSLGVGSYDMDEDEQFDTYPQVMRGGGGRLPKDPSVCIFWCAVALGGLVQGQPIEA 285
            M+ENAFLSDFF C GFLP T+ S I  +M+KIMT P +L    VG+ +   D        +      +LP DPS C FWCA+ALG L +G PIE+
Sbjct:    1 MEENAFLSDFFGCVGFLPLTTTSHIRETMVKIMTPPSSLQQSAVGADERSVDTNAPGANLIKASERNQLPMDPSTCTFWCAIALGALAKGSPIES 95          
BLAST of mRNA_S-dermatodea_contig11193.772.1 vs. uniprot
Match: D8LCW5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW5_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.810e-21
Identity = 53/103 (51.46%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    1 MQENAFLSDFFTCAGFLPFTSHSDIMGSMMKIMTSPGTLHSLGVGSYDMDEDEQFDTYPQVMRGG-------GGRLPKDPSVCIFWCAVALGGLVQGQPIEAV 288
            MQENAFLSDFF C GFLP  + S I  +M+KIM  P +     +G  D DE   +  +  V RGG       G RLP DPS C FWCAVALG L +G PIE+V
Sbjct:    1 MQENAFLSDFFGCNGFLPLATPSHIRETMVKIMLPPASSQQPVLGD-DCDEGGHY--FEAVARGGDLSKTSAGNRLPMDPSACTFWCAVALGALAKGSPIESV 100          
BLAST of mRNA_S-dermatodea_contig11193.772.1 vs. uniprot
Match: D8LCV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV4_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 6.670e-21
Identity = 50/103 (48.54%), Postives = 60/103 (58.25%), Query Frame = 1
Query:    1 MQENAFLSDFFTCAGFLPFTSHSDIMGSMMKIMTSPGTLHSLGVGSYDMDEDEQFDTYPQVMRGG-------GGRLPKDPSVCIFWCAVALGGLVQGQPIEAV 288
            MQEN FLSDFF C GFLP T+ S I  +M+KIM  P +      G      D++   +  V  GG       G +LP DPS C FWCAVALG LV+G PIE+V
Sbjct:   20 MQENTFLSDFFGCIGFLPLTTPSQIRETMVKIMVPPASSQQSVFGD---GSDKRGHYFEAVAPGGDLSKISAGSQLPMDPSACTFWCAVALGALVKGSPIESV 119          
BLAST of mRNA_S-dermatodea_contig11193.772.1 vs. uniprot
Match: A0A6H5JBJ1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 9.420e-21
Identity = 51/99 (51.52%), Postives = 59/99 (59.60%), Query Frame = 1
Query:    1 MQENAFLSDFFTCAGFLPFTSHSDIMGSMMKIMTSPGTLHSLGVGSYDMDEDEQFDTYPQVMRGG---GGRLPKDPSVCIFWCAVALGGLVQGQPIEAV 288
            MQENAFLSDFF C GFLP T+ S I G M+++MT     H LG  SYD  E  QFD    +   G   G +L   PS C FWCAV +G LV G P+E V
Sbjct:  112 MQENAFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPHQLGA-SYDSPEQCQFDAI--LTEDGITTGSQLSTGPSACTFWCAVGVGALVNGSPVELV 207          
BLAST of mRNA_S-dermatodea_contig11193.772.1 vs. uniprot
Match: D8LU09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU09_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 4.200e-20
Identity = 46/96 (47.92%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 MQENAFLSDFFTCAGFLPFTSHSDIMGSMMKIMTSPGTLHSLGVGSYDMDEDEQFDTYPQVMRGGGGRLPKDPSVCIFWCAVALGGLVQGQPIEAV 288
            MQENAFLSDFF C GF+P TSHS I  +M+KIM SP  L    +G                      +LP DPS C FWCA+ALG L +G P+E+V
Sbjct:   20 MQENAFLSDFFGCVGFVPLTSHSHIRETMVKIMASPAPLQQSAIGGAFGGVGSMVRARCWNKASEKPQLPMDPSTCTFWCAIALGALAKGCPVESV 115          
BLAST of mRNA_S-dermatodea_contig11193.772.1 vs. uniprot
Match: A0A6H5K8E7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E7_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.100e-20
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 1
Query:    1 MQENAFLSDFFTCAGFLPFTSHSDIMGSMMKIMTSPGTLHSLGVGSYDMDEDEQFDTYPQVMRGGGGRLPKDPSVCIFWCAVALGGLVQGQPIEAV 288
            MQENAFLSDFF C GF+PFTS S I G+M+++M      H  G      ++ +  DT+ +     G +L   PS C FWCAV +G L +G P+E+V
Sbjct:  112 MQENAFLSDFFGCVGFMPFTSRSHIRGAMVRMMARSTAQHQPGARHNSPEQSQFGDTFTEDGITPGNQLLTGPSCCTFWCAVGMGALAKGSPVESV 207          
BLAST of mRNA_S-dermatodea_contig11193.772.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.550e-19
Identity = 44/96 (45.83%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 MQENAFLSDFFTCAGFLPFTSHSDIMGSMMKIMTSPGTLHSLGVGSYDMDEDEQFDTYPQVMRGGGGRLPKDPSVCIFWCAVALGGLVQGQPIEAV 288
            MQENAFLSDFF C GF+P TSHS I  +M++IM SP  L    +G    +                 +LP D S C FWCA+ALG L +G P+E+V
Sbjct:  124 MQENAFLSDFFGCVGFVPLTSHSHIRETMVRIMASPAPLQQSAIGGACSEVGTMVRAPCWNEASERNQLPMDASTCTFWCAIALGALAKGSPVESV 219          
BLAST of mRNA_S-dermatodea_contig11193.772.1 vs. uniprot
Match: D8LU29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU29_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 5.110e-18
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 1
Query:    1 MQENAFLSDFFTCAGFLPFTSHSDIMGSMMKIMTSPGTLHSLGVGSYDMDEDEQFDT-YPQVMRGGGGRLPKDPSVCIFWCAVALGGLVQGQPIEAV 288
            MQENA LSDFF C GF+P T+ S I G+M+++MTS    H  G   +D      F + + +     G +L   PS C FWCAV LG LV+G P+E+V
Sbjct:   39 MQENACLSDFFGCIGFMPLTTRSHIRGAMVRMMTSSTPHHQPGA-PHDSPAQGHFGSIFTEDGITPGNQLSTGPSACTFWCAVGLGALVKGSPVESV 134          
BLAST of mRNA_S-dermatodea_contig11193.772.1 vs. uniprot
Match: D8LU22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU22_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 5.700e-18
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 MQENAFLSDFFTCAGFLPFTSHSDIMGSMMKIMTSPGTLHSLGVGSYDMDEDEQFDTYPQVMRGGGGRLPKDPSVCIFWCAVALGGLVQGQPIEAV 288
            MQEN FLSDFF C GFLP T+ S I G+MM++M      +  G      D+ +    + +     G +L   PS C FWCAV +G LV+G P+E+V
Sbjct:    1 MQENVFLSDFFGCVGFLPLTTRSHIRGTMMRMMAHSAAQYQPGARHDSPDQGQFGAIFTEDGITTGNQLSTGPSACTFWCAVGVGALVKGSPVESV 96          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11193.772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU07_ECTSI3.770e-2347.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU05_ECTSI1.220e-2148.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCW5_ECTSI1.810e-2151.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCV4_ECTSI6.670e-2148.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBJ1_9PHAE9.420e-2151.52Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU09_ECTSI4.200e-2047.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8E7_9PHAE6.100e-2044.79Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JYW4_9PHAE1.550e-1945.83Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU29_ECTSI5.110e-1845.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU22_ECTSI5.700e-1842.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11193contigS-dermatodea_contig11193:3030..3876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_000650.1
Exons2
Model size288
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924191.280535-CDS-S-dermatodea_contig11193:3029..32491622924191.280535-CDS-S-dermatodea_contig11193:3029..3249Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11193 3030..3249 -
1694079080.9976468-CDS-S-dermatodea_contig11193:3029..32491694079080.9976468-CDS-S-dermatodea_contig11193:3029..3249Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11193 3030..3249 -
1622924191.3532465-CDS-S-dermatodea_contig11193:3808..38761622924191.3532465-CDS-S-dermatodea_contig11193:3808..3876Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11193 3809..3876 -
1694079081.0095086-CDS-S-dermatodea_contig11193:3808..38761694079081.0095086-CDS-S-dermatodea_contig11193:3808..3876Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11193 3809..3876 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11193.772.1prot_S-dermatodea_contig11193.772.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11193 3030..3876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11193.772.1

>prot_S-dermatodea_contig11193.772.1 ID=prot_S-dermatodea_contig11193.772.1|Name=mRNA_S-dermatodea_contig11193.772.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=96bp
MQENAFLSDFFTCAGFLPFTSHSDIMGSMMKIMTSPGTLHSLGVGSYDMD
EDEQFDTYPQVMRGGGGRLPKDPSVCIFWCAVALGGLVQGQPIEAV
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mRNA from alignment at S-dermatodea_contig11193:3030..3876-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11193.772.1 ID=mRNA_S-dermatodea_contig11193.772.1|Name=mRNA_S-dermatodea_contig11193.772.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=847bp|location=Sequence derived from alignment at S-dermatodea_contig11193:3030..3876- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGAGAACGCCTTCTTGAGCGACTTCTTCACCTGCGCTGGCTTTCT GCCCTTCACCAGTCACAGGTCTGGGCGTAGCGCTGTTGGGTCAACCAATA GAAGGAAGGACTGCCCGTCCATGCAGTTCCTCGGGCGTCGATTCCCTTCA CTACAACAACCGGACGTTCTCATTATTAATGGTAGTGAACGGTTTTGAAT CAAAAATCTTCCTGCATAGGACCCCTCTTATTCGAGTACCACTATTTTTG TGAGGTGGAATACTAGAGTAGTCGAGTCACGCAACGGTACCCACAACAAA TTTCACTCCTTCCTATCCATGTTTCATTGCGCAGAACCCCCGAGCTCTCC TAAACTATGAAGGGGGCATGCTTTCAGGTTTGTGCAGGGGGGAAACCTCG AAAAGCATATCCTACAAAGGGGTCGCGACACTTTATGCCCGAGGAAATTA TGGACTCTTTTGTGTCATGGCCAAAAGCATCGGGCTGTGGTAAGTAGTAA AATGTCAAAAAGAGCGGTTCAGTTCGCACAAAGAAGCGGCTCAAGACTTG CGCCCCCCTAGCTCGTAGGATGTCCCTCCCACCTCCTCAATGGGCCATGC CCATCTGTATGCGATCGTCGATGGCAGCGATATCATGGGATCAATGATGA AGATCATGACCTCCCCGGGCACGTTGCATTCCCTTGGGGTCGGATCGTAC GACATGGACGAAGACGAGCAGTTTGACACCTATCCGCAAGTCATGCGAGG CGGCGGTGGCAGGCTTCCGAAGGACCCTTCTGTTTGCATCTTCTGGTGTG CAGTGGCTCTCGGAGGGCTTGTGCAGGGCCAACCCATCGAGGCAGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11193:3030..3876-

>mRNA_S-dermatodea_contig11193.772.1 ID=mRNA_S-dermatodea_contig11193.772.1|Name=mRNA_S-dermatodea_contig11193.772.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at S-dermatodea_contig11193:3030..3876- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGAGAACGCCTTCTTGAGCGACTTCTTCACCTGCGCTGGCTTTCT
GCCCTTCACCAGTCACAGATGCAGGAGAACGCCTTCTTGAGCGACTTCTT
CACCTGCGCTGGCTTTCTGCCCTTCACCAGTCACAGCGATATCATGGGAT
CAATGATGAAGATCATGACCTCCCCGGGCACGTTGCATTCCCTTGGGGTC
GGATCGTACGACATGGACGAAGACGAGCAGTTTGACACCTATCCGCAAGT
CATGCGAGGCGGCGGTGGCAGGCTTCCGAAGGACCCTTCTGTTTGCATCT
TCTGGTGTGCAGTGGCTCTCGGAGGGCTTGTGCAGGGCCAACCCATCGAG
GCAGTGCGATATCATGGGATCAATGATGAAGATCATGACCTCCCCGGGCA
CGTTGCATTCCCTTGGGGTCGGATCGTACGACATGGACGAAGACGAGCAG
TTTGACACCTATCCGCAAGTCATGCGAGGCGGCGGTGGCAGGCTTCCGAA
GGACCCTTCTGTTTGCATCTTCTGGTGTGCAGTGGCTCTCGGAGGGCTTG
TGCAGGGCCAACCCATCGAGGCAGTG
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