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Homology
BLAST of mRNA_S-dermatodea_contig11187.764.1 vs. uniprot
Match: D7FL94_ECTSI (Non-specific serine/threonine protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL94_ECTSI) HSP 1 Score: 155 bits (392), Expect = 1.500e-37 Identity = 153/340 (45.00%), Postives = 175/340 (51.47%), Query Frame = 1
Query: 1 EILEKEFNEAEEAFEDGVEGGG--TEGGDEHAAELEIQEAVFMSSYIPRSLHEVDNVEERQSRIQQEKREGGAGTAYAIAVSHMLKE----------NTPASPN----------------GAPSARAKKSV----RIAEGPSSTSDEPAPPLSIGHNGNEAQPAKMSDVAEEREGGDVLSDGCLSADEDASVSGDESDVSGTSDSGDEG-----------------------------------------------------------ERHTRRGWAERRARLRKDGMHGRRLPPPEAEDERASAKVEKREAXXXXXXXXXXXXXXXXXXHIKQQRIKHT 747
E+LEKEF+EAE AFED + GG +E G E AAELEIQ+AVFMSSYIPRSLHEVDNVE+RQSRIQQE+REGG GTAYAIAV+HMLK+ N SP G PS R K + R A+ S ++ G +G + VA ++ G V +G G D G G HTRR WAERRARLRKDGMHGRRLPPP+AE+ERA+AK EKREAXXXXXXXXXXXXXXXXX H+KQQRIKHT
Sbjct: 439 EVLEKEFDEAE-AFEDESKNGGVKSEKGAEMAAELEIQDAVFMSSYIPRSLHEVDNVEDRQSRIQQEQREGGKGTAYAIAVTHMLKQDPKKDKHPAINDSTSPXXXXXXXXXXXXXXXXXGNPSGRHSKPLPKAGRAADSLSGSTSAAVDTAGSGGDGG-------APVAGGQQSGLVSEXXXXXXKAGVRFAG-----VGEEDRGRNGGATGAPAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTRRNWAERRARLRKDGMHGRRLPPPQAEEERATAKAEKREAXXXXXXXXXXXXXXXXXKHVKQQRIKHT 765
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 122.9 |
| Seed ortholog evalue | 1.9e-25 |
| Seed eggNOG ortholog | 2880.D7FL94 |
| Preferred name | RIOK1 |
| KEGG ko | ko:K07178 |
| KEGG Pathway | ko03008,map03008 |
| GOs | GO:0000003,GO:0001932,GO:0001933,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007399,GO:0007548,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0008406,GO:0009791,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0014013,GO:0014015,GO:0016070,GO:0016072,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022613,GO:0023051,GO:0023056,GO:0023057,GO:0030154,GO:0030490,GO:0030684,GO:0030688,GO:0031323,GO:0031324,GO:0031325,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036093,GO:0036211,GO:0040026,GO:0040028,GO:0042127,GO:0042254,GO:0042274,GO:0042325,GO:0042326,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043408,GO:0043409,GO:0043412,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045595,GO:0045597,GO:0045935,GO:0045936,GO:0046483,GO:0046578,GO:0046579,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048585,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051056,GO:0051057,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051704,GO:0051960,GO:0051962,GO:0060251,GO:0060252,GO:0060255,GO:0060284,GO:0061062,GO:0061063,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1902531,GO:1902532,GO:1902533,GO:1990234,GO:1990904,GO:2000026,GO:2000232,GO:2000234 |
| EggNOG free text desc. | positive regulation of rRNA processing |
| EggNOG OGs | COG1718@1,KOG2270@2759 |
| EC | 2.7.11.1 |
| COG Functional cat. | DT |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko01001,ko03009 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1293 |
| Cds size | 648 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11187.764.1 >prot_S-dermatodea_contig11187.764.1 ID=prot_S-dermatodea_contig11187.764.1|Name=mRNA_S-dermatodea_contig11187.764.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=216bp
MSSYIPRSLHEVDNVEERQSRIQQEKREGGAGTAYAIAVSHMLKENTPAS
PNGAPSARAKKSVRIAEGPSSTSDEPAPPLSIGHNGNEAQPAKMSDVAEE
REGGDVLSDGCLSADEDASVSGDESDVSGTSDSGDEGERHTRRGWAERRA
RLRKDGMHGRRLPPPEAEDERASAKVEKREAKKAAKDAQKERRKTKIKKH
IKQQRIKHTSGCKKK* back to topmRNA from alignment at S-dermatodea_contig11187:500..4027+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig11187.764.1 ID=mRNA_S-dermatodea_contig11187.764.1|Name=mRNA_S-dermatodea_contig11187.764.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3528bp|location=Sequence derived from alignment at S-dermatodea_contig11187:500..4027+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAATTCTCGAGAAGGAGTTCAACGAGGCGGAGGAGGCCTTCGAAGACGG
GGTGGAAGGAGGCGGCACGGAGGGCGGAGATGAACACGCCGCGGAACTTG
AAATCCAGGAGGCCGTGTTCATGAGCTCCTACATCCCCAGAAGCCTTCAC
GAGGTGCGTGTGGAATCGAGATTGTCATGAGACCTTGCTGTAGGAAAGGG
GGCTGTGTAGCGTACCCCGGAGTTCCGAGCTATGTATGCCCTATCTGACT
CCGAGCGTTGTCTTAATTGATATTTATGTGCTATTATACTATAAATAGAG
GGGAGCCACGGCTACGCCCGTAATGTGTGCGAAACGGCTAACCGTCGAAG
TATCCGAAAAATCTCCAAAGTACTACTCTGTAATCCCTATCTATTTTGCG
TCAAGAGCTCCACTCTAACAGCCCTATGGATTTGGCATCAAGAGCTCCAC
TCTAAATTCTCAATAAAGAATTGTGCAAAGACCTATCTATTGCTGAAGAT
TATAGATAATACTTCCGCAGGTTTTGCGACTCCTCGGGTTCTCACATAAA
CCACGAGCGGCATCCGCAACCATTGGCGTGCCGGTCGGTTGTAACTGTCA
TACCAAGCAATCAATCAATCAATCAATAAAATCGATCAAATCATTCGACA
GCGTTGGGCAGTCTTTCGACGATTGCGTCGGTTTCTCAAGCCCCCCTCCC
TGCTTTCGGGGGTAGACGCCGAGGTCGCACCCTACAGGAGAGTACTCGCT
CCGGTCCCGTGTGTGGCCCTGAGGTACCGTTAATTTGCAAGGGATAGAGA
GGCGGGGTGGGGGACGAAAAACACGTGCTTAAATTTGTCGGAAGAGATGG
TCCAGATACTTTCGGGTCCAGAGATGAGAAAGGGCGACTCCCCCGCCCAT
TTCCCCGCCTTGCGTTGTGCCTATTTCCTTTTACCATGTTAGTGCTGGTC
TTACGGTTATGCCCTGCCTCTTGTGTAAAGGATGTAGGGTCGGGTCTGTT
GAAAGCGTTTGCGGCGGAGGCACTCCCGTTGAGGACCAGCGCGTCCAGGT
GAACGCCGTAGATCGTTTCCGGTTGAGTTGCTGCAGATTTTCCTCGACAC
CCGCGTGCTCTACCCCTCCATTAAATCCCTGCAGTTTGGCTTCCTCGCAA
CAGCGCAGCACACGAAGTACCGCCGTCCTCACCGTGCGACTGCACACCGT
GTAGCATGCTTTGTGGAGACGTGAACCCCACACCCCGTTGCACACACCGA
CCTCTGCGTGAGTCTTCGCCGGCCTGTCGTCTACAAGGCCGCAGCGCCAA
GCTTATAATAGTTTTATTTTCTTACCCCAATTCTTGATGTTCCCGCTCCC
CAAGGTGGACAACGTGGAGGAGCGGCAAAGCCGTATACAGCAGGAGAAAC
GAGAGGGCGGGGCAGGAACCGCGTACGCGATCGCCGTGAGCCACATGCTT
AAGGAAAACACCCCGGCATCACCGAACGGTGCCCCCTCCGCCAGAGCTAA
AAAGTCCGTTCGCATTGCCGAAGGCCCTTCCTCGACCAGCGACGAGCCTG
CGCCACCTCTAAGCATTGGTCACAACGGCAACGAAGCTCAACCGGCCAAG
ATGAGCGACGTGGCGGAGGAGAGAGAAGGAGGAGATGTCTTGTCGGACGG
CTGTCTCTCGGCAGACGAGGATGCTAGCGTTAGCGGTGACGAGTCGGACG
TATCCGGGACGTCCGACAGCGGAGACGAAGGTGAAAGGCACACGAGGAGG
GGCTGGGCGGAGAGAAGGGCTAGGCTGAGGAAAGATGGCATGCACGGGAG
GAGGCTGCCGCCGCCCGAGGCAGAGGACGAACGCGCGTCCGCTAAGGTGG
AGAAGCGGGAGGTGCGTGGGTGTTTTGTTTATATAAAGAAACCGAACACA
CAAAGTGTACTACAAGTATCCATATCTCATCGGGACAGGACCCGGGTGGG
CTTTGTTGTGCACAGAACGCGCGCCCCGTAGTTGAACTGGTACGCCGACT
GTAAGGAAGGCGGAGGACCCGGGTTCGAATCCGGGCGGAGTCAATATATA
TATATATTTTCCACCTCCGCCGCCGAAAGCGCGTCAGCGTGACGAAATAA
AATCCGAGAAATCGGCGAGCTGCGGGAGTACCGAACCCACTACGCGATAA
AAATCGAAGGCGAGAACCGGGGATAAGAGAGGTGGGATGATCCCTTGTGA
CCACAGACGGACCTCGGAAAAGCAAGTCTATCATATGTGTGCAAAAACAT
AATAAAAATAAAAATTAACTGGGGTGATTTCACGACCGCCCTGAAGAAAA
CATCCTTACAGCAGTAGTAGAACATGGTCCAGGCAACTAATTTGTGGCGG
CGGAACTGGAAGGGCTGCGGTGAATATGGAGACGAGCGCGTAGTATTTTT
AGTCGTTGCGCGGCGCGTCAGTACGCTGCTTATCCGCGGCATCTTGAGTT
TTTTTTGTTGCGGAGCTGCACGTTTGACGCTTTGTCGAGTTAGTTTTTTC
GTTTTCACCCGTGCATACTGCAGAAAAGGTCGAAATCACGTGTTTGACGC
TTCGGTGGGTTGGCGTTTCTGTTTTCTGCTTCTTGAGGTAACTTATTTTT
GGCATTTTCTTCGGTATGCCGCAACCGTCGACTGTTTAGCTCGTCTCCAC
CGGTGATCGCCGATGAAACACGGTGCTATTTAGATGAGCCTACAATGTAG
GGCGAAAGAAACGTCATCGATCGCTCCTCAACGTTTTGATGTTCGCGACT
GTATCGCGTATGATTGTCTCGACTTTTTTTTTCGGGATCCGGAAAACCGA
CACAGTTGCCTGTTAACACCGGCTCTCTCTGTGCTTCCTTCCATATCGTG
CGTGTTATATACCTACCTCGTGCACTCTGAATTACCTTGAAATAGGCGAA
AAAGGCCGCCAAAGACGCTCAGAAGGAACGTCGAAAGACCAAAATCAAGA
AGCACATCAAGCAGCAGCGCATCAAGCATACATCGGGCTGCAAGAAGAAG
TGATCGGCACCGTCGCCGGGAGCGTTTTGCGAATCCAGAACGCTCTTTGC
GCCAAACTCACGGTGACAAAGCGCCCCCAAATACTCGGAACCTTACGATT
AATAGTGTAGAAGATTCTGTTTGGTCTGACAGGGTGATTTTTAGAGAGTC
CGCGTACAAGCGATTATGGCGTCGAGGTGTTAAATCTTGCCCCGTATAGA
GCCTTTCCTCTGCAGTGTAAAAACCATCCGTGTTCCGTTTTGCGACGCGA
ATGCCGCCAAGCGTCAGGGCGTCGTCTTTGGTGAAATGCCCCCAGCACTG
TAGCCTCCGATACAGCAGTCTCTATTCAGCTCGACGATGAGTTCGGCTTC
TCCGGCCCGATCTGCGTGGTGTCCCCGTGCCGATACCTTCCTGGACGTGG
TATCCGTCGAACGAAGCACTCCTGGGGCGAGACGCCTCACTGGCGGCCGT
TTCAGTGAACTTGGTGATGAAGTCGGTCGGGCTTGCCACGCAGATTGAGC
CGGAGGAGCTGATTTTTTTAGGCTGGGG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig11187:500..4027+ >mRNA_S-dermatodea_contig11187.764.1 ID=mRNA_S-dermatodea_contig11187.764.1|Name=mRNA_S-dermatodea_contig11187.764.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1296bp|location=Sequence derived from alignment at S-dermatodea_contig11187:500..4027+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCTCCTACATCCCCAGAAGCCTTCACGAGATGAGCTCCTACATCCC
CAGAAGCCTTCACGAGGTGGACAACGTGGAGGAGCGGCAAAGCCGTATAC
AGCAGGAGAAACGAGAGGGCGGGGCAGGAACCGCGTACGCGATCGCCGTG
AGCCACATGCTTAAGGAAAACACCCCGGCATCACCGAACGGTGCCCCCTC
CGCCAGAGCTAAAAAGTCCGTTCGCATTGCCGAAGGCCCTTCCTCGACCA
GCGACGAGCCTGCGCCACCTCTAAGCATTGGTCACAACGGCAACGAAGCT
CAACCGGCCAAGATGAGCGACGTGGCGGAGGAGAGAGAAGGAGGAGATGT
CTTGTCGGACGGCTGTCTCTCGGCAGACGAGGATGCTAGCGTTAGCGGTG
ACGAGTCGGACGTATCCGGGACGTCCGACAGCGGAGACGAAGGTGAAAGG
CACACGAGGAGGGGCTGGGCGGAGAGAAGGGCTAGGCTGAGGAAAGATGG
CATGCACGGGAGGAGGCTGCCGCCGCCCGAGGCAGAGGACGAACGCGCGT
CCGCTAAGGTGGAGAAGCGGGAGGTGGACAACGTGGAGGAGCGGCAAAGC
CGTATACAGCAGGAGAAACGAGAGGGCGGGGCAGGAACCGCGTACGCGAT
CGCCGTGAGCCACATGCTTAAGGAAAACACCCCGGCATCACCGAACGGTG
CCCCCTCCGCCAGAGCTAAAAAGTCCGTTCGCATTGCCGAAGGCCCTTCC
TCGACCAGCGACGAGCCTGCGCCACCTCTAAGCATTGGTCACAACGGCAA
CGAAGCTCAACCGGCCAAGATGAGCGACGTGGCGGAGGAGAGAGAAGGAG
GAGATGTCTTGTCGGACGGCTGTCTCTCGGCAGACGAGGATGCTAGCGTT
AGCGGTGACGAGTCGGACGTATCCGGGACGTCCGACAGCGGAGACGAAGG
TGAAAGGCACACGAGGAGGGGCTGGGCGGAGAGAAGGGCTAGGCTGAGGA
AAGATGGCATGCACGGGAGGAGGCTGCCGCCGCCCGAGGCAGAGGACGAA
CGCGCGTCCGCTAAGGTGGAGAAGCGGGAGGCGAAAAAGGCCGCCAAAGA
CGCTCAGAAGGAACGTCGAAAGACCAAAATCAAGAAGCACATCAAGCAGC
AGCGCATCAAGCATACATCGGGCTGCAAGAAGAAGTGAGCGAAAAAGGCC
GCCAAAGACGCTCAGAAGGAACGTCGAAAGACCAAAATCAAGAAGCACAT
CAAGCAGCAGCGCATCAAGCATACATCGGGCTGCAAGAAGAAGTGA back to top
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