mRNA_S-dermatodea_contig11185.763.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11185.763.1
Unique NamemRNA_S-dermatodea_contig11185.763.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11185.763.1 vs. uniprot
Match: D8LD53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD53_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.430e-18
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 1
Query:   46 GSGQYADETNGDNWVQCDTCRKWRRLPDFVDPETLPAKWHCEMNEFDTARSSC 204
            G+G  +DE  G  WVQCDTC+KWRRLPDFVDP+ LP KWHCEMN +D AR++C
Sbjct:   57 GNGGPSDE--GVVWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDAARANC 107          
BLAST of mRNA_S-dermatodea_contig11185.763.1 vs. uniprot
Match: A0A6H5K0G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G2_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 4.720e-18
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 1
Query:   46 GSGQYADETNGDNWVQCDTCRKWRRLPDFVDPETLPAKWHCEMNEFDTARSSC 204
            G+G  +DE  G  WVQCDTC+KWRRLPDFVDP+ LP KWHCEMN +D AR++C
Sbjct:  243 GNGGPSDE--GVVWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDVARANC 293          
BLAST of mRNA_S-dermatodea_contig11185.763.1 vs. uniprot
Match: A0A7S1XXG7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXG7_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.490e-12
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 1
Query:   82 NWVQCDTCRKWRRLPDFVDPETLPAKWHCEMNEFDTARSSC 204
            NWV+C+ C KWRRLP  VDP TLP KW C MN +DT RS C
Sbjct:  227 NWVECEKCNKWRRLPAGVDPNTLPDKWFCSMNFWDTLRSHC 267          
BLAST of mRNA_S-dermatodea_contig11185.763.1 vs. uniprot
Match: A0A2C6KIK7_9APIC (Cw-type zinc finger (Fragment) n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6KIK7_9APIC)

HSP 1 Score: 67.4 bits (163), Expect = 1.730e-11
Identity = 26/42 (61.90%), Postives = 29/42 (69.05%), Query Frame = 1
Query:   79 DNWVQCDTCRKWRRLPDFVDPETLPAKWHCEMNEFDTARSSC 204
            DNWVQC+ C+KWRRLP  VDPE LP  W C MN +D    SC
Sbjct:  447 DNWVQCEACKKWRRLPASVDPEQLPDTWLCAMNHWDPLHDSC 488          
BLAST of mRNA_S-dermatodea_contig11185.763.1 vs. uniprot
Match: A0A6P6RSI8_9EIME (histone-lysine N-methyltransferase 2D-like n=1 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A6P6RSI8_9EIME)

HSP 1 Score: 67.0 bits (162), Expect = 2.350e-11
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   79 DNWVQCDTCRKWRRLPDFVDPETLPAKWHCEMNEFDTARSSC 204
            DNWVQC+ CRKWRRLP  +DP++LP  W C M  +D++ +SC
Sbjct:  504 DNWVQCEACRKWRRLPAAIDPDSLPETWVCSMTHWDSSITSC 545          
BLAST of mRNA_S-dermatodea_contig11185.763.1 vs. uniprot
Match: A0A7S1GRD9_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GRD9_CYCTE)

HSP 1 Score: 63.5 bits (153), Expect = 5.490e-11
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   16 DEEEGREDEDGS--GQYADETNGDNWVQCDTCRKWRRLPDFVDPETLPAKWHCEMNEFDTARSSC 204
            DE++G E ++GS  GQ    +N   WV+CD C+KWRRL   VD + LP+KW+C MN+ D  R+ C
Sbjct:   73 DEQQGDERDEGSIFGQTTGSSNA-TWVECDKCKKWRRLRGVVDEKKLPSKWYCSMNKNDPDRARC 136          
BLAST of mRNA_S-dermatodea_contig11185.763.1 vs. uniprot
Match: A0A7S3XPV4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPV4_HETAK)

HSP 1 Score: 62.4 bits (150), Expect = 6.530e-11
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 1
Query:   76 GDNWVQCDTCRKWRRLPDFVDPETLPAKWHCEMNEFDTARSSC 204
            G  WVQCD C KWRR+P+ VD E LP KW+C MN +   R++C
Sbjct:   47 GFQWVQCDGCAKWRRVPNAVDLERLPEKWYCRMNTWAPERAAC 89          
BLAST of mRNA_S-dermatodea_contig11185.763.1 vs. uniprot
Match: A0A7S2WT05_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WT05_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 8.090e-11
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1
Query:   82 NWVQCDTCRKWRRLPDFVDPETLPAKWHCEMNEFDTARSSC 204
            NWV C+TC++WR+LP  VD   LP KW+C MNE+D  R+SC
Sbjct:  413 NWVLCETCQQWRKLPPEVDVNRLPEKWYCHMNEWDKQRASC 453          
BLAST of mRNA_S-dermatodea_contig11185.763.1 vs. uniprot
Match: A0A7S4AFB3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AFB3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 8.180e-11
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   67 ETNGDNWVQCDTCRKWRRLPDFVDPETLPAKWHCEMNEFDTARSSC 204
            E N   WVQCD+C+KWR LPD V   +LP +W+C MN +D  RS+C
Sbjct:  657 EQNDTEWVQCDSCKKWRVLPDTVKVSSLPEQWYCHMNIYDKKRSNC 702          
BLAST of mRNA_S-dermatodea_contig11185.763.1 vs. uniprot
Match: A0A444UKL9_ACIRT (MORC family CW-type zinc finger protein 3 n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444UKL9_ACIRT)

HSP 1 Score: 65.1 bits (157), Expect = 1.120e-10
Identity = 22/32 (68.75%), Postives = 28/32 (87.50%), Query Frame = 1
Query:   82 NWVQCDTCRKWRRLPDFVDPETLPAKWHCEMN 177
            NWVQCD+C KWR+LPD +DP+ LP KW+C+MN
Sbjct:  400 NWVQCDSCLKWRKLPDGIDPDRLPEKWYCQMN 431          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11185.763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD53_ECTSI2.430e-1867.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0G2_9PHAE4.720e-1867.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1XXG7_9STRA3.490e-1265.85Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2C6KIK7_9APIC1.730e-1161.90Cw-type zinc finger (Fragment) n=1 Tax=Cystoisospo... [more]
A0A6P6RSI8_9EIME2.350e-1157.14histone-lysine N-methyltransferase 2D-like n=1 Tax... [more]
A0A7S1GRD9_CYCTE5.490e-1147.69Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S3XPV4_HETAK6.530e-1155.81Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2WT05_9STRA8.090e-1158.54Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S4AFB3_9STRA8.180e-1154.35Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A444UKL9_ACIRT1.120e-1068.75MORC family CW-type zinc finger protein 3 n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11185contigS-dermatodea_contig11185:6473..6676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue8e-15
Seed eggNOG ortholog2880.D8LD53
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043565,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.CW-type Zinc Finger
EggNOG OGs2E11X@1,2S8EJ@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCW-type zinc finger protein
Ec32 orthologEc-11_000500.1
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924190.623345-CDS-S-dermatodea_contig11185:6472..66761622924190.623345-CDS-S-dermatodea_contig11185:6472..6676Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11185 6473..6676 +
1694079080.4670887-CDS-S-dermatodea_contig11185:6472..66761694079080.4670887-CDS-S-dermatodea_contig11185:6472..6676Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11185 6473..6676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11185.763.1prot_S-dermatodea_contig11185.763.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11185 6473..6676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11185.763.1

>prot_S-dermatodea_contig11185.763.1 ID=prot_S-dermatodea_contig11185.763.1|Name=mRNA_S-dermatodea_contig11185.763.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=68bp
QLEDEDEEEGREDEDGSGQYADETNGDNWVQCDTCRKWRRLPDFVDPETL
PAKWHCEMNEFDTARSSC
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mRNA from alignment at S-dermatodea_contig11185:6473..6676+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11185.763.1 ID=mRNA_S-dermatodea_contig11185.763.1|Name=mRNA_S-dermatodea_contig11185.763.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at S-dermatodea_contig11185:6473..6676+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCTGGAGGACGAGGACGAGGAGGAGGGGCGGGAGGACGAGGATGGGAG CGGGCAGTACGCGGATGAGACGAACGGGGACAACTGGGTGCAGTGCGACA CTTGCAGGAAGTGGCGAAGGCTGCCGGACTTCGTTGACCCGGAGACGCTG CCCGCCAAGTGGCACTGCGAGATGAACGAGTTCGACACGGCCAGGTCTAG CTGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11185:6473..6676+

>mRNA_S-dermatodea_contig11185.763.1 ID=mRNA_S-dermatodea_contig11185.763.1|Name=mRNA_S-dermatodea_contig11185.763.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at S-dermatodea_contig11185:6473..6676+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCTGGAGGACGAGGACGAGGAGGAGGGGCGGGAGGACGAGGATGGGAG
CGGGCAGTACGCGGATGAGACGAACGGGGACAACTGGGTGCAGTGCGACA
CTTGCAGGAAGTGGCGAAGGCTGCCGGACTTCGTTGACCCGGAGACGCTG
CCCGCCAAGTGGCACTGCGAGATGAACGAGTTCGACACGGCCAGGTCTAG
CTGCCAGCTGGAGGACGAGGACGAGGAGGAGGGGCGGGAGGACGAGGATG
GGAGCGGGCAGTACGCGGATGAGACGAACGGGGACAACTGGGTGCAGTGC
GACACTTGCAGGAAGTGGCGAAGGCTGCCGGACTTCGTTGACCCGGAGAC
GCTGCCCGCCAAGTGGCACTGCGAGATGAACGAGTTCGACACGGCCAGGT
CTAGCTGC
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