mRNA_S-dermatodea_contig11181.761.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11181.761.1
Unique NamemRNA_S-dermatodea_contig11181.761.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11181.761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11181contigS-dermatodea_contig11181:7222..7598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size377
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11181.761.1prot_S-dermatodea_contig11181.761.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11181 7242..7547 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924190.440155-UTR-S-dermatodea_contig11181:7221..72411622924190.440155-UTR-S-dermatodea_contig11181:7221..7241Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11181 7222..7241 +
1694079080.357182-UTR-S-dermatodea_contig11181:7221..72411694079080.357182-UTR-S-dermatodea_contig11181:7221..7241Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11181 7222..7241 +
1622924190.4628937-UTR-S-dermatodea_contig11181:7547..75981622924190.4628937-UTR-S-dermatodea_contig11181:7547..7598Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11181 7548..7598 +
1694079080.3747818-UTR-S-dermatodea_contig11181:7547..75981694079080.3747818-UTR-S-dermatodea_contig11181:7547..7598Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11181 7548..7598 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924190.4503815-CDS-S-dermatodea_contig11181:7241..75471622924190.4503815-CDS-S-dermatodea_contig11181:7241..7547Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11181 7242..7547 +
1694079080.3653123-CDS-S-dermatodea_contig11181:7241..75471694079080.3653123-CDS-S-dermatodea_contig11181:7241..7547Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11181 7242..7547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11181.761.1

>prot_S-dermatodea_contig11181.761.1 ID=prot_S-dermatodea_contig11181.761.1|Name=mRNA_S-dermatodea_contig11181.761.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
MHPLTVSSGRRATKESRMSSSVSAIIAIPKLGPLPPGPVAKITPRWLDAC
CSINSLLPNEWMSPHSSCLISSRNKQQEADTSSQNRVFRSVSAFNTWDAW
S*
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mRNA from alignment at S-dermatodea_contig11181:7222..7598+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11181.761.1 ID=mRNA_S-dermatodea_contig11181.761.1|Name=mRNA_S-dermatodea_contig11181.761.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=377bp|location=Sequence derived from alignment at S-dermatodea_contig11181:7222..7598+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCACCCGCCCCCCGAGGCTCATGCATCCCCTGACTGTGAGCAGCGGTCGA
CGGGCTACGAAGGAAAGCAGGATGTCGTCTTCCGTCTCCGCTATAATAGC
AATCCCGAAACTCGGCCCCCTTCCCCCGGGGCCCGTCGCCAAGATTACGC
CACGATGGCTCGATGCTTGCTGCTCTATTAACAGCCTCTTACCCAACGAA
TGGATGTCGCCACACTCCTCTTGCCTGATATCGAGCCGCAACAAACAGCA
AGAGGCCGATACATCCTCCCAAAACCGGGTATTCCGCTCCGTCTCGGCAT
TCAACACGTGGGACGCGTGGTCTTAAGTCTGTTTGGATATATCATGTCAT
ACGGCGTGCGTTAAACATGAGTACACT
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Coding sequence (CDS) from alignment at S-dermatodea_contig11181:7222..7598+

>mRNA_S-dermatodea_contig11181.761.1 ID=mRNA_S-dermatodea_contig11181.761.1|Name=mRNA_S-dermatodea_contig11181.761.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig11181:7222..7598+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCATCCCCTGACTGTGAGCAGCGGTCGACGGGCTACGAAGGAAAGCAG
GATGTCGTCTTCCGTCTCCGCTATAATAGCAATCCCGAAACTCGGCCCCC
TTCCCCCGGGGCCCGTCGCCAAGATTACGCCACGATGGCTCGATGCTTGC
TGCTCTATTAACAGCCTCTTACCCAACGAATGGATGTCGCCACACTCCTC
TTGCCTGATATCGAGCCGCAACAAACAGCAAGAGGCCGATACATCCTCCC
AAAACCGGGTATTCCGCTCCGTCTCGGCATTCAACACGTGGGACGCGTGG
TCTTAAATGCATCCCCTGACTGTGAGCAGCGGTCGACGGGCTACGAAGGA
AAGCAGGATGTCGTCTTCCGTCTCCGCTATAATAGCAATCCCGAAACTCG
GCCCCCTTCCCCCGGGGCCCGTCGCCAAGATTACGCCACGATGGCTCGAT
GCTTGCTGCTCTATTAACAGCCTCTTACCCAACGAATGGATGTCGCCACA
CTCCTCTTGCCTGATATCGAGCCGCAACAAACAGCAAGAGGCCGATACAT
CCTCCCAAAACCGGGTATTCCGCTCCGTCTCGGCATTCAACACGTGGGAC
GCGTGGTCTTAA
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