mRNA_S-dermatodea_contig11177.759.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11177.759.1
Unique NamemRNA_S-dermatodea_contig11177.759.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11177.759.1 vs. uniprot
Match: D8LBZ6_ECTSI (Spindle pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBZ6_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.170e-40
Identity = 79/91 (86.81%), Postives = 83/91 (91.21%), Query Frame = 2 
Query:    2 ELRGVEGLMMSYKVRWPVSLVLSKKSLTKYQLLFRHIFFAKHVQRLLSK-RLMDHQDTKQLELRGLMMQSYLLRQRMLHFMQNLVYYMMVE 271
            ELRGVEGLMMS+KV WPVSLVLSKKSLTKYQLLFRH+FFAKHVQRLLSK    +HQDTKQLEL+GLMM SY LR RMLHFMQNLVYYMMVE
Sbjct:   25 ELRGVEGLMMSFKVGWPVSLVLSKKSLTKYQLLFRHLFFAKHVQRLLSKDSWREHQDTKQLELKGLMMASYQLRHRMLHFMQNLVYYMMVE 115
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BLAST of mRNA_S-dermatodea_contig11177.759.1 vs. uniprot
Match: A0A7S3XS90_HETAK (Spindle pole body component (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS90_HETAK)

HSP 1 Score: 109 bits (273), Expect = 2.840e-26
Identity = 53/89 (59.55%), Postives = 71/89 (79.78%), Query Frame = 2 
Query:    5 LRGVEGLMMSYKVRWPVSLVLSKKSLTKYQLLFRHIFFAKHVQRLLSKRLMDHQDTKQLELRGLMMQSYLLRQRMLHFMQNLVYYMMVE 271
            L+G+E  M +Y+V WP+S+V+SK++LT YQLLFRH+FF+KHV+R L    +DHQ+TK+L+LR  M  +Y LR RMLHF+QN VYYMM E
Sbjct:  179 LKGIEAFMFNYQVTWPLSIVVSKRALTMYQLLFRHLFFSKHVERRLLTAWLDHQETKELDLRSAMAPTYSLRHRMLHFIQNFVYYMMFE 267
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BLAST of mRNA_S-dermatodea_contig11177.759.1 vs. uniprot
Match: A0A835ZJD2_9STRA (Spc98 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJD2_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.940e-25
Identity = 54/89 (60.67%), Postives = 71/89 (79.78%), Query Frame = 2 
Query:    5 LRGVEGLMMSYKVRWPVSLVLSKKSLTKYQLLFRHIFFAKHVQRLLSKRLMDHQDTKQLELRGLMMQSYLLRQRMLHFMQNLVYYMMVE 271
            LRG++ L+++Y+V+WP+SL++S K+LTKY LLFRH+FFAKHV+R+L     DHQ  K+L L  LM+ +Y LRQRMLHFMQN VYYM  E
Sbjct:  917 LRGMDSLVLTYRVKWPLSLIISAKALTKYNLLFRHLFFAKHVERMLLGTWRDHQAIKELSLGQLMLGTYRLRQRMLHFMQNFVYYMTFE 1005
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BLAST of mRNA_S-dermatodea_contig11177.759.1 vs. uniprot
Match: A0A7S2X717_9EUKA (Spindle pole body component n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X717_9EUKA)

HSP 1 Score: 104 bits (259), Expect = 1.330e-24
Identity = 50/89 (56.18%), Postives = 72/89 (80.90%), Query Frame = 2 
Query:    5 LRGVEGLMMSYKVRWPVSLVLSKKSLTKYQLLFRHIFFAKHVQRLLSKRLMDHQDTKQLELRGLMMQSYLLRQRMLHFMQNLVYYMMVE 271
            L+G++   ++YKVRWP+SL++S +SLTKYQL+FRH+F+ KHV+  L K  ++ Q  K+L ++G   ++++LRQRMLHFMQNLVYYMMVE
Sbjct:  128 LKGLDAFTLTYKVRWPLSLIISMRSLTKYQLIFRHLFYCKHVEAQLHKAWLNQQAMKELNVQGSFHRAHVLRQRMLHFMQNLVYYMMVE 216
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BLAST of mRNA_S-dermatodea_contig11177.759.1 vs. uniprot
Match: A0A3R7A0U0_9STRA (Spindle pole body component (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7A0U0_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.050e-24
Identity = 50/88 (56.82%), Postives = 64/88 (72.73%), Query Frame = 2 
Query:    8 RGVEGLMMSYKVRWPVSLVLSKKSLTKYQLLFRHIFFAKHVQRLLSKRLMDHQDTKQLELRGLMMQSYLLRQRMLHFMQNLVYYMMVE 271
            + ++ L + YKV WP+SLV+S  +L KYQ++FRH+FF KHV+R L     +HQ TK+L LR  +M SY LRQRMLHF QN VYYMM E
Sbjct:   19 KAIDALTLDYKVSWPLSLVISSGALNKYQMIFRHLFFCKHVERRLCDAWRNHQSTKELALRSALMTSYCLRQRMLHFQQNFVYYMMFE 106
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BLAST of mRNA_S-dermatodea_contig11177.759.1 vs. uniprot
Match: A0A485KH80_9STRA (Aste57867_5071 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KH80_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.060e-23
Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = 2 
Query:    8 RGVEGLMMSYKVRWPVSLVLSKKSLTKYQLLFRHIFFAKHVQRLLSKRLMDHQDTKQLELRGLMMQSYLLRQRMLHFMQNLVYYMMVE 271
            + ++ L + YKV+WP+SLV+S  +L KYQ++FRH+FF KHV+R L     +HQ TK+L LR  M+ SY LRQRMLHF QN VYYMM E
Sbjct:  898 KAIDALTLDYKVKWPLSLVISSGALNKYQMIFRHLFFCKHVERRLCDAWRNHQSTKELALRSAMITSYCLRQRMLHFQQNFVYYMMFE 985
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BLAST of mRNA_S-dermatodea_contig11177.759.1 vs. uniprot
Match: A0A7S2WAJ6_9STRA (Spindle pole body component n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WAJ6_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.810e-23
Identity = 51/89 (57.30%), Postives = 66/89 (74.16%), Query Frame = 2 
Query:    5 LRGVEGLMMSYKVRWPVSLVLSKKSLTKYQLLFRHIFFAKHVQRLLSKRLMDHQDTKQLELRGLMMQSYLLRQRMLHFMQNLVYYMMVE 271
            L GV+   + +KVRWP+SLVLS+++LTKYQL+FRH+FF KHV+R L    + HQ TK+L LR  +   Y LRQRMLHF+QN  YY+M E
Sbjct:  838 LHGVDAFTLDFKVRWPLSLVLSRQALTKYQLIFRHLFFCKHVERQLCTTWLAHQTTKELNLRSALGPDYCLRQRMLHFLQNFEYYVMFE 926
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BLAST of mRNA_S-dermatodea_contig11177.759.1 vs. uniprot
Match: A0A7S0CU30_9EUKA (Spindle pole body component n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CU30_9EUKA)

HSP 1 Score: 101 bits (252), Expect = 3.690e-23
Identity = 51/89 (57.30%), Postives = 68/89 (76.40%), Query Frame = 2 
Query:    5 LRGVEGLMMSYKVRWPVSLVLSKKSLTKYQLLFRHIFFAKHVQRLLSKRLMDHQDTKQLELRGLMMQSYLLRQRMLHFMQNLVYYMMVE 271
            LRG++   + Y+V+WP+SL++S KSLTKYQL+FRH+F+ KHV+  L K  +  Q  K+L + G    +YLLRQRMLHF+QNLVYYMMVE
Sbjct:  384 LRGLDAFTLIYRVKWPMSLIISMKSLTKYQLIFRHLFYCKHVEAELCKAWLHQQLFKELNVAGTFKGAYLLRQRMLHFLQNLVYYMMVE 472
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BLAST of mRNA_S-dermatodea_contig11177.759.1 vs. uniprot
Match: A0A3R7EYB1_9STRA (Spindle pole body component n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7EYB1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.770e-23
Identity = 49/88 (55.68%), Postives = 64/88 (72.73%), Query Frame = 2 
Query:    8 RGVEGLMMSYKVRWPVSLVLSKKSLTKYQLLFRHIFFAKHVQRLLSKRLMDHQDTKQLELRGLMMQSYLLRQRMLHFMQNLVYYMMVE 271
            + ++ L + YKV WP+SLV+S  +L KYQ++FRH+FF +HV+R L     +HQ TK+L LR  +M SY LRQRMLHF QN VYYMM E
Sbjct:  114 KAIDALTLDYKVSWPLSLVISSGALNKYQMIFRHLFFCRHVERRLCDAWRNHQSTKELALRSALMTSYCLRQRMLHFQQNFVYYMMFE 201
[Close]
BLAST of mRNA_S-dermatodea_contig11177.759.1 vs. uniprot
Match: A0A3R6VQZ9_9STRA (Spindle pole body component n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VQZ9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.810e-23
Identity = 50/88 (56.82%), Postives = 64/88 (72.73%), Query Frame = 2 
Query:    8 RGVEGLMMSYKVRWPVSLVLSKKSLTKYQLLFRHIFFAKHVQRLLSKRLMDHQDTKQLELRGLMMQSYLLRQRMLHFMQNLVYYMMVE 271
            + ++ L + YKV WP+SLV+S  +L KYQ++FRH+FF KHV+R L     +HQ TK+L LR  +M SY LRQRMLHF QN VYYMM E
Sbjct:  677 KAIDALTLDYKVSWPLSLVISSGALNKYQMIFRHLFFCKHVERRLCDAWRNHQSTKELALRSALMTSYCLRQRMLHFQQNFVYYMMFE 764
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11177.759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBZ6_ECTSI2.170e-4086.81Spindle pole body component n=2 Tax=Ectocarpus Tax... [more]
A0A7S3XS90_HETAK2.840e-2659.55Spindle pole body component (Fragment) n=2 Tax=Het... [more]
A0A835ZJD2_9STRA1.940e-2560.67Spc98 family-domain-containing protein n=1 Tax=Tri... [more]
A0A7S2X717_9EUKA1.330e-2456.18Spindle pole body component n=1 Tax=Lotharella oce... [more]
A0A3R7A0U0_9STRA4.050e-2456.82Spindle pole body component (Fragment) n=2 Tax=Aph... [more]
A0A485KH80_9STRA2.060e-2356.82Aste57867_5071 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S2WAJ6_9STRA2.810e-2357.30Spindle pole body component n=1 Tax=labyrinthulid ... [more]
A0A7S0CU30_9EUKA3.690e-2357.30Spindle pole body component n=1 Tax=Amorphochlora ... [more]
A0A3R7EYB1_9STRA3.770e-2355.68Spindle pole body component n=2 Tax=Aphanomyces as... [more]
A0A3R6VQZ9_9STRA3.810e-2356.82Spindle pole body component n=1 Tax=Aphanomyces in... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11177contigS-dermatodea_contig11177:2623..4560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924190.3981116-CDS-S-dermatodea_contig11177:2622..27291622924190.3981116-CDS-S-dermatodea_contig11177:2622..2729Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11177 2623..2729 -
1694079080.3336635-CDS-S-dermatodea_contig11177:2622..27291694079080.3336635-CDS-S-dermatodea_contig11177:2622..2729Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11177 2623..2729 -
1622924190.4112098-CDS-S-dermatodea_contig11177:4394..45601622924190.4112098-CDS-S-dermatodea_contig11177:4394..4560Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11177 4395..4560 -
1694079080.3441586-CDS-S-dermatodea_contig11177:4394..45601694079080.3441586-CDS-S-dermatodea_contig11177:4394..4560Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11177 4395..4560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11177.759.1prot_S-dermatodea_contig11177.759.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11177 2623..4560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11177.759.1

>prot_S-dermatodea_contig11177.759.1 ID=prot_S-dermatodea_contig11177.759.1|Name=mRNA_S-dermatodea_contig11177.759.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=91bp
GAARGGGSDDVVQGALACVPGPLEEEPDQVPATVPAHLLRQARAAAALEE
ADGPPGHEAAGAARADDAIVPPQAAHAPLHAEPGLLHDGRG
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mRNA from alignment at S-dermatodea_contig11177:2623..4560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11177.759.1 ID=mRNA_S-dermatodea_contig11177.759.1|Name=mRNA_S-dermatodea_contig11177.759.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1938bp|location=Sequence derived from alignment at S-dermatodea_contig11177:2623..4560- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGCTGCGAGGGGTGGAGGGTCTGATGATGTCGTACAAGGTGCGCTGGC
CTGTGTCCCTGGTCCTCTCGAAGAAGAGCCTGACCAAGTACCAGCTACTG
TTCCGGCACATCTTCTTCGCCAAGCACGTGCAGCGGCTGCTCTCGAAGAG
GCTGATGGACCACCAGGCACGTCAAGTTTTGTTTTTGTTTTTTAAGGGGT
TGCCAGACCTATGTATTAACATTCGTATTGGAGAGGATTCTGCAGCTGGA
ATCCGGATTTTGCATGAGCGAGAGCATCGACCAGTTGGTTGTGCATCTTC
GGAGAACCGCTCGGAAAACCATTCCGAGAACTGTCCGGGGAGTGAGAAGA
ATACATTGACCCGAGAGGGTGTAGCTGTATCAGTCAGTCTGCGTTGCGTT
GCATCTTATGTTAGAATGTTAGAATACGGAGGAACACAGGTAATGGGGAC
CAAATCAACGAAACGTATGATAGTTTACCTCGATAATAAACTAACATCCG
GAATTTGCCTTTATCTACATAATACTCGAGTTATATATCCGGGCTGCGCA
ATGTGCGCTCAACGCGCTCGCTGCCCGACTAACCAGGCAGGATTCAGAGC
TGCCTCGCACATAGGACTGCTCTGCCTGCTGGTGTTGTTCCTCTGTCCTT
CGGACGCTTGGCCGATCAGATTCAGTATTTGGAATGTGTGTCTTCCGAAC
TTCCGAGACGCAGATTCCTAAAGGAATCCTATGAAAGTCAGTCTGGCCTG
GCCTTCTCTTGGTGCTTTACGTTCGTACAACATCTACCTGCAACAAACTT
CCGGCCATGAGTCGTGCCTTAACCTTTTAGTAATGTATAGTAAGGTGTAG
TAAGCCTGTTTTCGGGGCTACAGGCCATTTGCCCCGCACCGCTTTTGACG
TCGAACGTAACCGAACGGTGGCTACTATATAGTATATCGTATGGTATATG
CTATATACTATATGCTATATACTCCTCGCCGTATCAAAGCCGCGGTGTAA
TAACTCTTCCACGCTTACATAGCTTGCATGCACGGTGGTGGTGCACTTGT
GCGTGCTGTCCACCCGTCACCGCGATATACAGTACCCGTACTTTATACTA
CTATTAACTATAATACTATATGCTGTAATATATACTATACACTATAATAC
TATACCAGTATACTATATACAATAGACTCAGTACCAAAAGGGTTAACTAC
GCGAGAGTTACGGGAAAGGCGCTCGCTCGGGGCGATTCATTCGTGGTTTG
TTAACAAACCCGATAGTTGGGGGGCTGTTGATATTACTAGTTAAATATGC
TCTGCCGTAACAGGACATCGAGGGTGTTGAGAGAGAGCCCTTTAGCTGTA
GGAGAGAGGTCTTGTTTAGCAGAGCCTCCAGTACCGAGAGGTATGATGTG
TCCTCTCATGTCCTCTCCGTTTCCGAGCTTGGTGTTAGTTCTCTCTTATG
TACTATTCGTCCTATATAGATCATTCTAAATTTTGGTTTCGTTTTCGTTT
TCTTCTCGTTTTCTTCTCGATTTCGTCTTCTCCGTCCCAGAAACAAAAAA
ACGACACACAAACAAACAAACAAGCAAACTTTTTCGCTTTGTATAGTTGG
GCACCGAACAAAAACAGGCGACCGATGAGTATCTATTCCAGATCGATCAC
GTGTATCTCATGCTTCGGCTGATGCTCGGGGGCGGGCGTTTCTCATCTGA
CCAAGAACGGGATCGAGACGGGAAACGATTGGCGGGGGCGGGGCCGAGGC
CGGTCGGGGTTGTAAAAGGGACAAATTAACCAATCAAATTTACGTCACAC
CAATCATTTGTTTTTTTCTTCTTTCGCGCAGGACACGAAGCAGCTGGAGC
TGCGAGGGCTGATGATGCAATCGTACCTCCTCAGGCAGCGCATGCTCCAC
TTCATGCAGAACCTGGTTTACTACATGATGGTCGAGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig11177:2623..4560-

>mRNA_S-dermatodea_contig11177.759.1 ID=mRNA_S-dermatodea_contig11177.759.1|Name=mRNA_S-dermatodea_contig11177.759.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at S-dermatodea_contig11177:2623..4560- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGCTGCGAGGGGTGGAGGGTCTGATGATGTCGTACAAGGTGCGCTGGC
CTGTGTCCCTGGTCCTCTCGAAGAAGAGCCTGACCAAGTACCAGCTACTG
TTCCGGCACATCTTCTTCGCCAAGCACGTGCAGCGGCTGCTCTCGAAGAG
GCTGATGGACCACCAGGGAGCTGCGAGGGGTGGAGGGTCTGATGATGTCG
TACAAGGTGCGCTGGCCTGTGTCCCTGGTCCTCTCGAAGAAGAGCCTGAC
CAAGTACCAGCTACTGTTCCGGCACATCTTCTTCGCCAAGCACGTGCAGC
GGCTGCTCTCGAAGAGGCTGATGGACCACCAGGACACGAAGCAGCTGGAG
CTGCGAGGGCTGATGATGCAATCGTACCTCCTCAGGCAGCGCATGCTCCA
CTTCATGCAGAACCTGGTTTACTACATGATGGTCGAGGTGACACGAAGCA
GCTGGAGCTGCGAGGGCTGATGATGCAATCGTACCTCCTCAGGCAGCGCA
TGCTCCACTTCATGCAGAACCTGGTTTACTACATGATGGTCGAGGT
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