mRNA_S-dermatodea_contig11171.757.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11171.757.1
Unique NamemRNA_S-dermatodea_contig11171.757.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11171.757.1 vs. uniprot
Match: A0A6H5KP42_9PHAE (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP42_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.970e-34
Identity = 61/96 (63.54%), Postives = 68/96 (70.83%), Query Frame = 3 
Query:    3 MCGEDGAHDTHCLDACSGYEARLTRIDDFKYRYYLSCGFDASFFPLTTNCYRGCCPDEIECSSQVEACGDSPENGYTAGYVPEALPVLHEPYDADL 290
            MCG DGAHDT CLD CSGYEA +   D+F YRYY SCGFD SFFP T NC+RGCCP    CS ++EACG   + GYT  YVP AL  L E YDA+L
Sbjct:  221 MCGADGAHDTACLDLCSGYEATIDE-DEFTYRYYTSCGFDESFFPFTLNCFRGCCPTGNTCSDRLEACGVDADVGYTDDYVPVALESLDEFYDAEL 315
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BLAST of mRNA_S-dermatodea_contig11171.757.1 vs. uniprot
Match: R1DZX8_EMIHU (EF-hand domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DZX8_EMIHU)

HSP 1 Score: 52.8 bits (125), Expect = 7.440e-6
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 3 
Query:    6 CGEDGAHDTHCLDACSGYEARLTRIDDFKYRYYLS 110
            CG+ GAH+ +CLDAC+GY +    ID FKYRYY+S
Sbjct:  540 CGQTGAHEVYCLDACNGYYSDDESIDVFKYRYYMS 574
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11171.757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KP42_9PHAE1.970e-3463.54YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
R1DZX8_EMIHU7.440e-660.00EF-hand domain-containing protein n=2 Tax=Emiliani... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11171contigS-dermatodea_contig11171:683..3237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size291
Cds size291
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11171.757.1prot_S-dermatodea_contig11171.757.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11171 683..3237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924190.265517-CDS-S-dermatodea_contig11171:682..7921622924190.265517-CDS-S-dermatodea_contig11171:682..792Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11171 683..792 -
1694079080.250486-CDS-S-dermatodea_contig11171:682..7921694079080.250486-CDS-S-dermatodea_contig11171:682..792Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11171 683..792 -
1622924190.2821202-CDS-S-dermatodea_contig11171:2186..22601622924190.2821202-CDS-S-dermatodea_contig11171:2186..2260Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11171 2187..2260 -
1694079080.2669415-CDS-S-dermatodea_contig11171:2186..22601694079080.2669415-CDS-S-dermatodea_contig11171:2186..2260Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11171 2187..2260 -
1622924190.291291-CDS-S-dermatodea_contig11171:3130..32371622924190.291291-CDS-S-dermatodea_contig11171:3130..3237Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11171 3131..3237 -
1694079080.275147-CDS-S-dermatodea_contig11171:3130..32371694079080.275147-CDS-S-dermatodea_contig11171:3130..3237Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11171 3131..3237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11171.757.1

>prot_S-dermatodea_contig11171.757.1 ID=prot_S-dermatodea_contig11171.757.1|Name=mRNA_S-dermatodea_contig11171.757.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=97bp
RCAGRTERTTRTAWTRAPATRRGSPELMTSSIGTTCLAVSTHRSSHSPPT
ATADAARTRSNVAPRWRHAETLQRMAIQPATSRRRSPCCTNHMTPT*
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mRNA from alignment at S-dermatodea_contig11171:683..3237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11171.757.1 ID=mRNA_S-dermatodea_contig11171.757.1|Name=mRNA_S-dermatodea_contig11171.757.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2555bp|location=Sequence derived from alignment at S-dermatodea_contig11171:683..3237- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGATGTGCGGGGAGGACGGAGCGCACGACACGCACTGCCTGGACGCGTGC
TCCGGCTACGAGGCGAGGCTCACCCGAATTGATGACTTCAAGTATCGGTA
CTACTTGGTGAGCGATTCGGTGGGGACTTCGCGTGGCAGAGGGGTGCCGG
GATGTAGGGAAAATGCACGCAGTATTTTGCGCTCCCGCCGTATGTACCTT
GGACGGATTCATGCCGATGCTGACGTTTTCAAGCGTCGGTACTTCCTGAG
GAGAAAGTTTGGTAGAAAGCAAGAGAGGGCGGAAGATGCCGATATCCTGT
AGGTTTTCTCTGGCGACACGAGACTGGTCTTGCGAAGGGCGTGTGCCGAT
ACCAGGCACCGCTGTGAGTGATTATGTTCTATAGCGAGAAAGAGGACCTG
TAGCGCGACCGTTTTATGTTGTTTCGGAAACTCCAATCGAGATAAATGCA
CGCCGAGGGGCGCTATGGTGCACTATACTTGAACGGTTTAGTCAAGTTTC
AGCCCTTGTTGAGGGAGACGGGTCGATATGCGCGTGTGTATCACCCAAAT
GGTCGGTCATGCTTTCCCGCGCATGAAAGCCGCTCGCTCCTTCAATTTCC
GTTCGTGTGTGCGGTACGGAGCTGATCACCTAGTCTACAATTTTCCAAGG
ATAAGCCCTAGAGCTCTATGCATTTCGTGCAATCGATCGCCCCCTTTTCT
TTTGTTTTGGGTGCAATTCGGCCTTCTTCGATGAGTGAGCAGACCAGGTG
CTGTGGGGTTTTAATACCCTTTTGTTGGTGTTGACGGGTCGTAAGCCTCC
TTTTATCAACACAGTGGCCGCGAATCTTGTTTCTGAGAGAAGAGAAAATT
CGCCGTCGAGATCGATCGGGAAAACTTGAAACAACCCATTCGAATGATGA
TTGATGCGGATCGCCAGCGTGAAACCTTACGCTTACGTCCGCAATGCGAA
CGGCCCGTGCTTTTTGCTGGACCCCAGTCTTGCGGTTTCGACGCATCGTT
CTTCCCACTCACCACCAACTGCTACCGCGGATGCTGCCCGGACGAGATCG
AGTGAGTGCACACAAACGCGTTTCGATTCCACAACATATTCCTTGCATGA
TTTAGATATTGGAGTTTTTGTGCGCACCCAATGCGCCATAAAAGTCACTA
AAAAGAACCGGGGATAAGAGAGATGGGATGATCCCTTGTGACCACAGACG
GACCTCGGAAAAGCAAGTCTATCATATGTGTGCAAAATATATATATGCTT
GTAACATAGAGCTCGATTCCTCCTAAACCTGTAGTTCTCACTCGCCCTTC
TCACCGACCCCGCCTTTGCGACACGTACACTTCCCGTGGCGTTCTCAAAT
CCGAAGCCACACCCAGCCATTTTGATTGCGGTTTCCTTCTTTTCAGTAAG
CTCACTGTCGGATCTCAGGACCTCGCTCAACCCTGGGTTGTTCCTGAGCA
CGTTGGAGAAAGTTGTTTTTTTTGCAGCGCAAAGGCTTTCGTTTGGCAAT
CGGGACTGGAATTACGTTCCTATGAACTCTCTACAAGTATGAACACAGAC
CCCGCCTCTCCTGTGCAAGCTGTTGTGGGCCGAAGCTTTCTTGCGCGTCC
CATCGCGTGAGGTACAACACCTGGCGCGGCTGCATCTGTTTTTGTTGACC
AAGAGGATAGGATTTTTTACACTGGTTGCCCACTGGTCCCCCCCCCCCGT
CGGTATCTCCGGGAGGGTGATTTCTTCTTGAGCGCGTGCGGGATGCGCGT
GCGGGATGCGGGTGCTTCGGTAGATCGCGAGGTCATCATTCCGCCACAAT
GGATGCCCGGACACAGCGAAGACTGAGTGAACCACGTCTTCGTTTGGCCC
CAAAAGGGGACGTCTAAGATGTTACTCTGCCAAATCCAGAGATGTGGGAT
ACAAGTTTTATAGTCGGCGGCGGCGGTGGAAAAGCATGAGGAAATATGCG
ACCCCGTGCAGGTCGTAAAGGTTTAGCGCTAACATTGAAATATATACGTC
GTTCGCCATGAACTCCCCCCGATGTTTTATCTTAGGATAAAAGGAACTCG
TGCCGAGGGCGCCCGGGGCATTTGCCCGGAAAATTTCTGTTTCGAAGTAC
ACACGAACGAGCCTCGTGGCGCGTTCGTCCGGAAGCGCACTTGAATTATT
ATGTCGTGTGCGCGTTGCCACGCTGATTTTGACCGTACGTGTAAAAACAT
TCCGTAGCGTTCCTTTCAAGTATCTTCATTGTTCCGTACCTAGTACACGT
TGTTTGCTATCCGCCCACGTCGTGCCCGGTTCACCCCCTCATTTTTCACT
TTGTTTTTCTGCTCCAACACCTCTGTTTGTCGGTACAGCGAATATTTTTC
ATGTGTTTCCTTGTTCTAAAAGAAACAGCACTTCATTACTGCTTCTCTAT
CCACGCCTGTGGTACCGAAACACCGGGATGTCCCTTGCCTTTCAGATGTA
GCTCCCAGGTGGAGGCATGCGGAGACTCTCCAGAGAATGGCTATACAGCC
GGCTACGTCCCGGAGGCGCTCCCCGTGTTGCACGAACCATATGACGCCGA
CCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11171:683..3237-

>mRNA_S-dermatodea_contig11171.757.1 ID=mRNA_S-dermatodea_contig11171.757.1|Name=mRNA_S-dermatodea_contig11171.757.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at S-dermatodea_contig11171:683..3237- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGATGTGCGGGGAGGACGGAGCGCACGACACGCACTGCCTGGACGCGTGC
TCCGGCTACGAGGCGAGGCTCACCCGAATTGATGACTTCAAGTATCGGTA
CTACTTGAGATGTGCGGGGAGGACGGAGCGCACGACACGCACTGCCTGGA
CGCGTGCTCCGGCTACGAGGCGAGGCTCACCCGAATTGATGACTTCAAGT
ATCGGTACTACTTGTCTTGCGGTTTCGACGCATCGTTCTTCCCACTCACC
ACCAACTGCTACCGCGGATGCTGCCCGGACGAGATCGATCTTGCGGTTTC
GACGCATCGTTCTTCCCACTCACCACCAACTGCTACCGCGGATGCTGCCC
GGACGAGATCGAATGTAGCTCCCAGGTGGAGGCATGCGGAGACTCTCCAG
AGAATGGCTATACAGCCGGCTACGTCCCGGAGGCGCTCCCCGTGTTGCAC
GAACCATATGACGCCGACCTGAATGTAGCTCCCAGGTGGAGGCATGCGGA
GACTCTCCAGAGAATGGCTATACAGCCGGCTACGTCCCGGAGGCGCTCCC
CGTGTTGCACGAACCATATGACGCCGACCTGA
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