mRNA_S-dermatodea_contig11161.754.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11161.754.1
Unique NamemRNA_S-dermatodea_contig11161.754.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11161.754.1 vs. uniprot
Match: D7G4Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z8_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.520e-15
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 2 
Query:  170 KKVIEHFNRSTTSKILLEDLTASTGGGKGSKAKLSQAVAQRWTSICKMLLRLLQKSPALVEVYVVRKGNVSPLGDRKREVSYLMT 424
            K ++ HFN+S   KI LE++      GKGS AKLSQAVAQRW SICKMLLR+L++  AL ++Y+       PL  RK+EV  + T
Sbjct:  275 KGIVGHFNKSAADKIALEEIIDEMSQGKGSTAKLSQAVAQRWISICKMLLRVLERWDALKKIYL-DSDKEFPLRSRKKEVEEVYT 358
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BLAST of mRNA_S-dermatodea_contig11161.754.1 vs. uniprot
Match: A0A6H5JP19_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP19_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 4.160e-14
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 2 
Query:  170 KKVIEHFNRSTTSKILLEDLTASTGGGKGSKAKLSQAVAQRWTSICKMLLRLLQKSPALVEVYVVRKGNVSPLGDRKREV 409
            KKV++H NRS   KI LED       GK  KAKLSQAV+QRW S+CKMLLR+L++  A+ +VY   +    PLGD +RE+
Sbjct:  195 KKVVQHVNRSQGFKIELEDTLEKASDGKRWKAKLSQAVSQRWISLCKMLLRILEQWVAIDKVYASNREKF-PLGDLRREM 273
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BLAST of mRNA_S-dermatodea_contig11161.754.1 vs. uniprot
Match: D7G3L2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L2_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.370e-13
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 2 
Query:  170 KKVIEHFNRSTTSKILLEDLTASTGGGKGSKAKLSQAVAQRWTSICKMLLRLLQKSPALVEVYVVRKGNVSPLGDRKREVSYLMT 424
            K ++ HFN+S   KI LE++      GKGS AKLSQAVAQRW  IC+MLLR+L++  AL + Y+       PL  RK+EV  + T
Sbjct:  275 KGIVGHFNKSAADKIALEEIIDEMSQGKGSTAKLSQAVAQRWIRICRMLLRVLERWDALKKFYL-DSDKEFPLRSRKKEVEEVYT 358
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BLAST of mRNA_S-dermatodea_contig11161.754.1 vs. uniprot
Match: A0A6H5K7T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T5_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.470e-13
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 2 
Query:  173 KVIEHFNRSTTSKIL----LEDLTASTGGGKGSKAKLSQAVAQRWTSICKMLLRLLQKSPALVEVYVVRKGNVSPLGDRKRE 406
            KVI+HFNRS+  KI     LE +    G G   + KLSQAV QRW S+CKMLLRLL++  A+  VY+  KG+V PLG R+ E
Sbjct:  428 KVIQHFNRSSRDKIAMDEYLEAVLEDLGNGDVPRGKLSQAVIQRWVSLCKMLLRLLERWDAISHVYL-NKGDVFPLGKRRDE 508
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BLAST of mRNA_S-dermatodea_contig11161.754.1 vs. uniprot
Match: A0A6H5L6Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 4.380e-12
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 2 
Query:  170 KKVIEHFNRSTTSKILLEDLTASTGGGKGSKAKLSQAVAQRWTSICKMLLRLLQKSPALVEVYVVRKGNVSPLGDRKREV 409
            KK+I+HFNRS+  KILL+D       G  + AKL+QAV QRW S  KM+ R+L++  A+ + +V  KG V PL + K E+
Sbjct:  422 KKIIQHFNRSSGDKILLDDELEELSEGNWNHAKLAQAVVQRWVSTAKMMFRILEQFTAIQKCFV-EKGKVFPLANYKTEI 500
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BLAST of mRNA_S-dermatodea_contig11161.754.1 vs. uniprot
Match: A0A6H5KX27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX27_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 4.400e-12
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 2 
Query:  170 KKVIEHFNRSTTSKILLEDLTASTGGGKGSKAKLSQAVAQRWTSICKMLLRLLQKSPALVEVYVVRKGNVSPLGDRKREV 409
            KK+I+HFNRS+  KILL+D       G  + AKL+QAV QRW S  KM+ R+L++  A+ + +V  KG V PL + K E+
Sbjct:  343 KKIIQHFNRSSGDKILLDDELEELSEGNWNHAKLAQAVVQRWVSTAKMMFRILEQFTAIQKCFV-EKGKVFPLANYKTEI 421
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BLAST of mRNA_S-dermatodea_contig11161.754.1 vs. uniprot
Match: A0A6H5KHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ8_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.260e-10
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 VTDAGADVSTGVGSVFPREWCLPHLVNRALLEGTGISSSSAAPSPNAGCCKLLEDA 168
            V+DAG+DVS+GV   F REWCLPH++NRA ++GTG+++++   S N  C  LLEDA
Sbjct:   62 VSDAGSDVSSGVVKSFSREWCLPHMLNRATIDGTGLANTTRL-SKNLDCRALLEDA 116
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BLAST of mRNA_S-dermatodea_contig11161.754.1 vs. uniprot
Match: D7FX26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX26_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 6.110e-7
Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 VTDAGADVSTGVGSVFPREWCLPHLVNRALLEGTGISSSSAAPSPNAGCCKLLEDAKE 174
            V+ +G +VSTG+   F RE  +PHLVNRA ++GTG+SSS A+ S NA C  +L+ A++
Sbjct:  102 VSGSGPEVSTGITGRFRRELSIPHLVNRAAIDGTGMSSSPAS-SKNAECRAMLKKAEK 158
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11161.754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G4Z8_ECTSI3.520e-1550.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP19_9PHAE4.160e-1452.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G3L2_ECTSI1.370e-1348.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7T5_9PHAE1.470e-1352.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6Z1_9PHAE4.380e-1246.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX27_9PHAE4.400e-1246.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHQ8_9PHAE1.260e-1055.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX26_ECTSI6.110e-750.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11161contigS-dermatodea_contig11161:217..1054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionRibonuclease H-like domain
Ec32 orthologEc-10_004020.1
Hectar predicted targeting categoryother localisation
Exons2
Model size424
Cds size195
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11161.754.1prot_S-dermatodea_contig11161.754.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11161 217..411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924189.8854887-CDS-S-dermatodea_contig11161:216..4111622924189.8854887-CDS-S-dermatodea_contig11161:216..411Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11161 217..411 +
1694079079.9007146-CDS-S-dermatodea_contig11161:216..4111694079079.9007146-CDS-S-dermatodea_contig11161:216..411Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11161 217..411 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924189.8944106-UTR-S-dermatodea_contig11161:411..4271622924189.8944106-UTR-S-dermatodea_contig11161:411..427Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11161 412..427 +
1694079079.9095106-UTR-S-dermatodea_contig11161:411..4271694079079.9095106-UTR-S-dermatodea_contig11161:411..427Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11161 412..427 +
1622924189.9025254-UTR-S-dermatodea_contig11161:841..10541622924189.9025254-UTR-S-dermatodea_contig11161:841..1054Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11161 842..1054 +
1694079079.9184144-UTR-S-dermatodea_contig11161:841..10541694079079.9184144-UTR-S-dermatodea_contig11161:841..1054Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11161 842..1054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11161.754.1

>prot_S-dermatodea_contig11161.754.1 ID=prot_S-dermatodea_contig11161.754.1|Name=mRNA_S-dermatodea_contig11161.754.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=65bp
VTDAGADVSTGVGSVFPREWCLPHLVNRALLEGTGISSSSAAPSPNAGCC
KLLEDAKEGNRALQ*
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mRNA from alignment at S-dermatodea_contig11161:217..1054+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11161.754.1 ID=mRNA_S-dermatodea_contig11161.754.1|Name=mRNA_S-dermatodea_contig11161.754.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=838bp|location=Sequence derived from alignment at S-dermatodea_contig11161:217..1054+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGACAGACGCTGGAGCCGACGTCTCGACTGGAGTGGGCTCCGTCTTCCC
TCGTGAGTGGTGCCTCCCTCACCTGGTCAACCGCGCGTTGCTCGAAGGAA
CGGGCATCTCGTCGTCGTCGGCCGCCCCCTCGCCCAACGCTGGCTGTTGC
AAGTTGCTAGAGGACGCCAAAGAAGGTAATCGAGCACTTCAATAGGTCTA
CAACGAGCAAGGTATGGTTACGTACAACTGATGTTCTACGCACACCGTCT
GTTCTCGCCGGCGGGGGGGTGGTGGGGGCTTCGGGGATCGAGCTCCCGGG
GGGTGACTCCATGAGGCTCTTGACACACCTTTTCATGCGCCACCGTGGCT
TACATTTTTACTGCGTTCTCTTTTGTATTCCACCACCCCCCTCCCCCTCG
ATAAACAGCGCGCGCATCTATATGGTATGTACACCGTTACGTCACAGCGG
TACCTGCTGTTGTTCTTCATGTATGCTGGTCTACCGCTGCGCTAGGCGGG
CCACTCTTTTTTATCCGTTACACCTGGTTACACTTCACCAAATCGTATAC
GATTTGCAGCAGCCCCCTCTGCGCTTTAACGTTTCACACACACGCGCCCC
ATGCTTTCGACCGTTCGTTGCAAAGATCCTGCTGGAAGATCTGACCGCTT
CGACGGGTGGCGGCAAGGGGTCCAAGGCCAAGCTATCGCAAGCCGTCGCC
CAGCGCTGGACCAGCATCTGCAAGATGCTGTTGCGTCTCCTGCAGAAGTC
GCCGGCTCTCGTGGAGGTCTACGTTGTTCGCAAAGGAAACGTTTCCCCCC
TCGGTGACCGGAAGAGGGAGGTGAGCTACTTGATGACA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11161:217..1054+

>mRNA_S-dermatodea_contig11161.754.1 ID=mRNA_S-dermatodea_contig11161.754.1|Name=mRNA_S-dermatodea_contig11161.754.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at S-dermatodea_contig11161:217..1054+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGACAGACGCTGGAGCCGACGTCTCGACTGGAGTGGGCTCCGTCTTCCC
TCGTGAGTGGTGCCTCCCTCACCTGGTCAACCGCGCGTTGCTCGAAGGAA
CGGGCATCTCGTCGTCGTCGGCCGCCCCCTCGCCCAACGCTGGCTGTTGC
AAGTTGCTAGAGGACGCCAAAGAAGGTAATCGAGCACTTCAATAGGTGAC
AGACGCTGGAGCCGACGTCTCGACTGGAGTGGGCTCCGTCTTCCCTCGTG
AGTGGTGCCTCCCTCACCTGGTCAACCGCGCGTTGCTCGAAGGAACGGGC
ATCTCGTCGTCGTCGGCCGCCCCCTCGCCCAACGCTGGCTGTTGCAAGTT
GCTAGAGGACGCCAAAGAAGGTAATCGAGCACTTCAATAG
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