mRNA_S-dermatodea_contig11154.750.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11154.750.1
Unique NamemRNA_S-dermatodea_contig11154.750.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11154.750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11154contigS-dermatodea_contig11154:999..3002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGamma-glutamylcyclotransferase
Ec32 orthologEc-06_002460.1
Exons2
Model size330
Cds size204
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11154.750.1prot_S-dermatodea_contig11154.750.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11154 1124..3002 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924189.5565526-UTR-S-dermatodea_contig11154:998..11231622924189.5565526-UTR-S-dermatodea_contig11154:998..1123Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11154 999..1123 +
1694079079.6762938-UTR-S-dermatodea_contig11154:998..11231694079079.6762938-UTR-S-dermatodea_contig11154:998..1123Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11154 999..1123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924189.5656247-CDS-S-dermatodea_contig11154:1123..12811622924189.5656247-CDS-S-dermatodea_contig11154:1123..1281Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11154 1124..1281 +
1694079079.685483-CDS-S-dermatodea_contig11154:1123..12811694079079.685483-CDS-S-dermatodea_contig11154:1123..1281Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11154 1124..1281 +
1622924189.5735996-CDS-S-dermatodea_contig11154:2956..30021622924189.5735996-CDS-S-dermatodea_contig11154:2956..3002Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11154 2957..3002 +
1694079079.6975553-CDS-S-dermatodea_contig11154:2956..30021694079079.6975553-CDS-S-dermatodea_contig11154:2956..3002Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11154 2957..3002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11154.750.1

>prot_S-dermatodea_contig11154.750.1 ID=prot_S-dermatodea_contig11154.750.1|Name=mRNA_S-dermatodea_contig11154.750.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=68bp
MTEAASIAAAAVDRIVSSNDGDGGAKERCIGMFSYGSNNERQLRARVRSP
QLRGSPAYIDGYVRVFGF
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mRNA from alignment at S-dermatodea_contig11154:999..3002+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11154.750.1 ID=mRNA_S-dermatodea_contig11154.750.1|Name=mRNA_S-dermatodea_contig11154.750.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2004bp|location=Sequence derived from alignment at S-dermatodea_contig11154:999..3002+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGAGAGCTCAGGCCAGAAACAGCAGGTGGCGGGGGAAGAAGTCGTAGTGG
TTGCTTGTGCGTTACGGTACCGGCAGTATTGGGTTTTTTGGATCCTCTGC
TGCTAGATTGCCACGACCAGAAAACATGACGGAAGCTGCTAGTATTGCTG
CTGCTGCTGTGGATAGGATCGTCAGCAGTAACGATGGTGATGGTGGTGCG
AAGGAGCGCTGCATAGGCATGTTTTCCTACGGAAGCAACAACGAGCGGCA
GCTCCGAGCGCGCGTCAGGAGCCCGCAACTCAGGTGACGAGGGATCCGCC
TATTCATTGTGAGGTTTGGGCGAAGGCAGGGCAAGCTCGCAGAGGCGATG
AATTTTGTTTTTGAGCATCTACCCGGTGCCGGTAAATGCATGGTACAGTA
TGTATTATACACAAGTATGTTGGCGCAATATCATATTTATAAAAACAAAA
TCTAGTTCCCATGTACATCCTCACAAGCACACACTGGTTTGGGGACTGAA
AGTATAATAGGTACCTGGTAGTCCTTTACTCTCTCAGTAAGGCATATGTG
CTGGGGGGGACTATAAATGTACAGGTGGACTACTAGTAGTGTGTGTACAT
CGCGCGAGAAGAAAACTCCATTTCCAAATCGTGAGCAGCATGTGTAAATG
TATAAGGTACAGGTCTCATCTCTCTGTAATTGACACGTTACATACTGTAC
AGACTATGACGCGTAAGGCCACTAGGCTATGATGAGACGTCAGATTAGTC
TATGACATGTCATGTCTCCGGACTATGACACATCACGACCTTTGAAGATA
TGTAGGTCTGCGTCCAGGGCTGGGACGCTGGGACCCAATTTCAGGGGGTC
GCGTGTCGCTCCCTGTCTCCCACAATATCCATCGACCTTGGCTGAACCTC
GCGTTCGGCCCACACCCACGAGGTGTGACCCGTCCCGAGACAAGCCCTAG
CGAGCCCGAACCCAGGGGGGGCACGCCGGCATCTCGAACGATAACTATTC
TAGCTCTACAGCAGCATTACCACATGTAACTTGGTCGTCGAGGCTCAGTT
TCCTATTTCGGGTTCGCACACCATGCAGCTTTCACTACACTGTTTCTTTT
CTCCGGTCTCTCATCATCCATCAATCTCGTTTCTTAGATGCTCCGCGAGT
AAATGTGGTACAGTACTTGTAACGCAACGAACAGGCCGCAATCGAGAGCA
GTTATAATAGTAAATTACCCAATCGACACCAATACCTAAAACGCTCGAGT
CCGGGGTACCCTAAAATTGCTGTGCCCATCACCATCAGACAGACCGAAAA
CAAAACAGCTGAGGTTTGTTCTGTGTACTGCAATTCAGTAGTAGTGCACA
GGACTCGAGCACCACAAGGACCAACTACAGTAGACTATAATAAGTCGAAA
GTTCCGTGTTGCGAACAATGGGGGTCAGCGCCCGCCCTGACCTCCTCACC
CCCTCTTGTGGCTCCGATGTTTCGTATACTTGTACTTCGTATAAGCGTTT
CCTATTTGATTGCGCAACTGAGGTGTGTTTCTTACGCCGATTTTTTTATT
TGTCGTGAGAAAACGAGCCTGAATTTCTTCAACACGACTGCAGGCGCCCA
CTACAGCTGTATGCGTTTGTAGACCAACCGACACTTACTTGGTGCGATAG
GCCGATAAGAGAAAGCAGCAACACCAACACCAGCGCCTATTCGATGGTAC
ACGGCTAGACAGAGCAATGCAGGCGTACGTCACGCCGGAAGAGCAGAAAT
ACCTTGCGTTGCTTGACGGGCATCACGTCAAGCACATTCCGTCTCGCGTT
CAATCAAGTTGTTTCGCCTTCTCCCTGCAAAGCAAAGACACGCAGAACGA
AACCAGCAGCCTTTATCATACTAGGAACGATTGACTCTCACACCCTCGGT
ATATTAGTTAGTTACAGCAGTATAATACCCTCTTGTGCTTGTACTCAACT
CGGCGCAGGGGTTCACCAGCCTATATCGATGGCTACGTCCGAGTGTTCGG
CTTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11154:999..3002+

>mRNA_S-dermatodea_contig11154.750.1 ID=mRNA_S-dermatodea_contig11154.750.1|Name=mRNA_S-dermatodea_contig11154.750.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at S-dermatodea_contig11154:999..3002+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGGAAGCTGCTAGTATTGCTGCTGCTGCTGTGGATAGGATCGTCAG
CAGTAACGATGGTGATGGTGGTGCGAAGGAGCGCTGCATAGGCATGTTTT
CCTACGGAAGCAACAACGAGCGGCAGCTCCGAGCGCGCGTCAGGAGCCCG
CAACTCAGATGACGGAAGCTGCTAGTATTGCTGCTGCTGCTGTGGATAGG
ATCGTCAGCAGTAACGATGGTGATGGTGGTGCGAAGGAGCGCTGCATAGG
CATGTTTTCCTACGGAAGCAACAACGAGCGGCAGCTCCGAGCGCGCGTCA
GGAGCCCGCAACTCAGGGGTTCACCAGCCTATATCGATGGCTACGTCCGA
GTGTTCGGCTTCGGGTTCACCAGCCTATATCGATGGCTACGTCCGAGTGT
TCGGCTTC
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