mRNA_S-dermatodea_contig11151.748.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11151.748.1
Unique NamemRNA_S-dermatodea_contig11151.748.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11151.748.1 vs. uniprot
Match: A0A6H5KY88_9PHAE (ABC1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY88_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 9.070e-14
Identity = 49/88 (55.68%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:    1 PREAADAARQVSGLVSMIGPGVLAIGQKFLVQLAARTLDRLADSFEDP--KKG----------------VPPGEQASAQQPKGRFYAD 210
            PREA +AARQ +GL SMIGPGV +I QKFLVQLAARTLDRLADSF+D   K G                V  G +  A   +GRFYAD
Sbjct: 1106 PREAVEAARQAAGLASMIGPGVASIAQKFLVQLAARTLDRLADSFDDQGNKDGAGSGAGGAGGATTVEDVASGVREPASTRRGRFYAD 1193
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11151.748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY88_9PHAE9.070e-1455.68ABC1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11151contigS-dermatodea_contig11151:930..3275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue2.8e-08
Seed eggNOG ortholog2880.D8LK12
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size618
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11151.748.1prot_S-dermatodea_contig11151.748.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11151 978..2879 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924189.4763005-UTR-S-dermatodea_contig11151:929..9771622924189.4763005-UTR-S-dermatodea_contig11151:929..977Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11151 930..977 +
1694079079.6262424-UTR-S-dermatodea_contig11151:929..9771694079079.6262424-UTR-S-dermatodea_contig11151:929..977Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11151 930..977 +
1622924189.522975-UTR-S-dermatodea_contig11151:2879..32751622924189.522975-UTR-S-dermatodea_contig11151:2879..3275Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11151 2880..3275 +
1694079079.6644018-UTR-S-dermatodea_contig11151:2879..32751694079079.6644018-UTR-S-dermatodea_contig11151:2879..3275Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11151 2880..3275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924189.489241-CDS-S-dermatodea_contig11151:977..10361622924189.489241-CDS-S-dermatodea_contig11151:977..1036Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11151 978..1036 +
1694079079.6383495-CDS-S-dermatodea_contig11151:977..10361694079079.6383495-CDS-S-dermatodea_contig11151:977..1036Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11151 978..1036 +
1622924189.507765-CDS-S-dermatodea_contig11151:2764..28791622924189.507765-CDS-S-dermatodea_contig11151:2764..2879Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11151 2765..2879 +
1694079079.6486878-CDS-S-dermatodea_contig11151:2764..28791694079079.6486878-CDS-S-dermatodea_contig11151:2764..2879Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11151 2765..2879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11151.748.1

>prot_S-dermatodea_contig11151.748.1 ID=prot_S-dermatodea_contig11151.748.1|Name=mRNA_S-dermatodea_contig11151.748.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=58bp
MIGPGVLAIGQKFLVQLAARTLDRLADSFEDPKKGVPPGEQASAQQPKGR
FYADGAP*
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mRNA from alignment at S-dermatodea_contig11151:930..3275+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11151.748.1 ID=mRNA_S-dermatodea_contig11151.748.1|Name=mRNA_S-dermatodea_contig11151.748.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2346bp|location=Sequence derived from alignment at S-dermatodea_contig11151:930..3275+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCGGGAGGCGGCGGACGCGGCGCGACAGGTTTCGGGGCTGGTGTCGAT
GATCGGGCCCGGGGTGCTGGCCATCGGCCAGAAGTTTTTGGTTCAGCTAG
CGGCGAGGTGAGATTATGTTAGTTTCGCTTTTTTCGTGCGCTCGGAGGGG
TTGTTGGAGGTTTGTGTATATTATGCGCGCGCGTGGGGTTGGGTATGGGT
ATGTGGCGGCAGAGAGATGGGGGGTGGGAGGGGGGAGGGTTTCCATGCGG
CGGCGATGGCGTCATGATGGCGTGTGTCGCCACCCAGCTCCGACGAGGGC
TCGAGGGGAGGGGTACATCAAAGCTGCACTTGTACCGTGATCCTATATAG
CTATAGCTTCATACGTAACACAAAACCATGGCAAAATATGCAACGTAAGC
CTCCCATAGGTGTATGATAGTAGCTTGGACCAGCTTTTTCCTTCTTCGAA
CAGGTGGGACCCCAACGCTCGCTCCATGTTTTTGAAATCATTTTAATTAT
TTAGGGGGCGCGGCGGGGGGGGGGGGGGGTCTCTGTTTCTCAAATCTTTA
TTTTTTTAGGGGGGAATTTCAAGTTTTGCGCGCCGTAGGTTCTAGATCGT
TGTTGACCGTGCGTCCTCGTGATCTATACCGGTATATACATATATTTTTT
ATTGATTTGTCACACATATAACAGACCGGCCGGCAAGTTTTGCAAGTGCA
AAAGTGCATGCTGATCCCGCTCGTGGTCATATGAAGGCACAAGAGCAGGT
GAAATCCAGCACCCCTACACCGAACATAAACTGAACTATTATCCAGACTT
GACGACGGAGACGTAGCCCGCACGCCGCCCTGAGCGCGTGGCCCCCAGAT
TTACAGGAAAACTATCATAGTAATGACGACGGAGCGTTGTTTCCCCCCCC
CCACAGGATCGGCCGACGGATGGGCGATCAATCGTTATTTTTGACTTTAT
ATGCCGAAAAGGTGGCGCCATAGAAAAAAAAAAAAAGGAAGAAGATGCGA
TGCCCGGTTCAAGCCAGTTTTTTTCCCTCTCCTTTCTACATAACAAGTCA
GTAGTTACCACCTTCTCAGGCCTGTTTTGTTTCCCCTCAGTTTTTTTGTA
GCGCTACGTACCGCCATTTTTCATTTTTCGAACGCCTGTACCGTGCTTCG
AACGTTCCTCTCATTTTTTCTTCCTGTTTCAGAGTCAGGCATACGACGCT
TCTCATACCAATGGCACTGTGAGGGGCAGGCGGGCGAGGTGGTGGGAGGG
GGGGGGCTCACAAAAACGCAGAAGAGATACATTACCAGGACACAATTCAG
GACAAAGACTCACGTCCTGTATGATACCATAACCATACAACATCATACAT
GATAAGACACCATAGCATCATATGTAACAACTGAGCCTCTTCCCTTTTGA
AAAGGTGGGACCCCAACGCTCGCTCTATGTTTCTGAAATCTATATTTTTT
TAGGGGCTAACCTATAGTAGTAGTCGCACCTAACAGTGCCGTGTGTATCA
AGCTGTCCCGATCATCCTTGTGAAAAGCAACCTGGCCGACGTTAACCTGG
CATATCGCTCAGTCCCGGCATTTTTGGGACAGGTTGGTCTATGTGCATCA
TGATATGACATGCGTTTAACGTAAGTACCCCCATCCCCGCCCTCCCCCGC
CCCGCCCCGCCCTCTCCTCTCNNNNNNNNNNTCTTTCTTTTAGTCTTCAC
CCCGCCTCTTCTTGTGTGGTTTGGGTTTTTGTGGGGTTTATTCGGTTGTT
TTTCGTATTTGTTTTGTCTTCACCCCCCCCCCCCCCCCCCCCCCCCGCCC
CTTCCTGGACCCTCTCCGTTTTTTGTTTCCTGTAGGACACTCGACCGCCT
TGCGGACAGCTTCGAGGACCCGAAGAAGGGCGTTCCACCTGGCGAGCAGG
CGTCGGCGCAACAGCCGAAGGGTCGTTTTTACGCTGATGGCGCGCCGTGA
AACTCGATGTCCGGCTACTAATAGTACTTGGTTTCCTGCGCCGCCACGCG
CGAGAAAAGCGCGCAGAGGCGATTGGCCGGTTGGATATGTCGTCGGTCGT
GGGAATCGGTAATGCCGTCCGTGATAAGTGCTTGTTTGTACATCCTTGAA
GATGGGATTGGTACAGCGTGGTACTTGTTTCGCAAATCGTAAAAGGAAAG
CTAACGAGAGTTGGTTCGTTGATTGATTGGTTGGTCGCGGTAAAAGACTA
AGCGATTGCCTGGTAATCGTTATTCGTTTAGTGTACAGTAAGCGGGTCCG
AGGAGATACGATAGATTATGCTGTAATAGGGGGGGGCGCCGCCCACGGCG
AGTGTTCTTTCCATCCATGCTTGGGACGTTTGTTGTTTTTGTGTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11151:930..3275+

>mRNA_S-dermatodea_contig11151.748.1 ID=mRNA_S-dermatodea_contig11151.748.1|Name=mRNA_S-dermatodea_contig11151.748.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at S-dermatodea_contig11151:930..3275+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCGGGCCCGGGGTGCTGGCCATCGGCCAGAAGTTTTTGGTTCAGCT
AGCGGCGAGATGATCGGGCCCGGGGTGCTGGCCATCGGCCAGAAGTTTTT
GGTTCAGCTAGCGGCGAGGACACTCGACCGCCTTGCGGACAGCTTCGAGG
ACCCGAAGAAGGGCGTTCCACCTGGCGAGCAGGCGTCGGCGCAACAGCCG
AAGGGTCGTTTTTACGCTGATGGCGCGCCGTGAGACACTCGACCGCCTTG
CGGACAGCTTCGAGGACCCGAAGAAGGGCGTTCCACCTGGCGAGCAGGCG
TCGGCGCAACAGCCGAAGGGTCGTTTTTACGCTGATGGCGCGCCGTGA
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