mRNA_S-dermatodea_contig1115.747.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1115.747.1
Unique NamemRNA_S-dermatodea_contig1115.747.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1115.747.1 vs. uniprot
Match: D7FTH2_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH2_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 2.430e-6
Identity = 20/41 (48.78%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    7 LKRPLYGTAGSRMTEFCSEHKRTGMVNVLNKMCASEGCVKY 129
            +KRP +GT GS+  EFCS+H++ GMV+V+ + C   GC K+
Sbjct:    1 MKRPSFGTDGSKKAEFCSQHRQQGMVDVVTRKCGHPGCTKH 41
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BLAST of mRNA_S-dermatodea_contig1115.747.1 vs. uniprot
Match: A0A6H5K2C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2C8_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 1.670e-5
Identity = 20/41 (48.78%), Postives = 25/41 (60.98%), Query Frame = 1 
Query:    4 CLKRPLYGTAGSRMTEFCSEHKRTGMVNVLNKMCASEGCVK 126
            C  R  YG    R+ EFCSEH + GMVN++ K C   GC+K
Sbjct:   11 CEARAYYGNPQGRVLEFCSEHSKPGMVNLIRKRCGHPGCIK 51
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BLAST of mRNA_S-dermatodea_contig1115.747.1 vs. uniprot
Match: A0A6H5JGG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG2_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.260e-5
Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 GCLKRPLYGTAGSRMTEFCSEHKRTGMVNVLNKMC 105
            GC  RP YG AG +  EFCS+HK+ GM+N+++K C
Sbjct:   31 GCTTRPSYGNAGCKKAEFCSQHKKPGMMNLVSKRC 65
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1115.747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTH2_ECTSI2.430e-648.78EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5K2C8_9PHAE1.670e-548.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGG2_9PHAE2.260e-554.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1115contigS-dermatodea_contig1115:19115..20040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size344
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924189.386728-CDS-S-dermatodea_contig1115:19114..193161622924189.386728-CDS-S-dermatodea_contig1115:19114..19316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1115 19115..19316 +
1694079079.5818074-CDS-S-dermatodea_contig1115:19114..193161694079079.5818074-CDS-S-dermatodea_contig1115:19114..19316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1115 19115..19316 +
1622924189.3985353-CDS-S-dermatodea_contig1115:19898..200381622924189.3985353-CDS-S-dermatodea_contig1115:19898..20038Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1115 19899..20038 +
1694079079.5974865-CDS-S-dermatodea_contig1115:19898..200381694079079.5974865-CDS-S-dermatodea_contig1115:19898..20038Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1115 19899..20038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1115.747.1prot_S-dermatodea_contig1115.747.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1115 19115..20038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1115.747.1

>prot_S-dermatodea_contig1115.747.1 ID=prot_S-dermatodea_contig1115.747.1|Name=mRNA_S-dermatodea_contig1115.747.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=114bp
GCLKRPLYGTAGSRMTEFCSEHKRTGMVNVLNKMCASEGCVKYAVYGLDG
RRRQRLLCSRHFTEGHQGTASVVEAARAGQEAKKMGEQSGGQVALPNSRK
RALTLHRLPRQVDK
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mRNA from alignment at S-dermatodea_contig1115:19115..20040+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1115.747.1 ID=mRNA_S-dermatodea_contig1115.747.1|Name=mRNA_S-dermatodea_contig1115.747.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=926bp|location=Sequence derived from alignment at S-dermatodea_contig1115:19115..20040+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGATGTTTGAAGAGGCCATTGTATGGCACGGCGGGCAGCAGGATGACGGA
GTTTTGCAGCGAACACAAGAGGACGGGTATGGTTAACGTCTTGAACAAAA
TGTGCGCCAGCGAGGGTTGCGTCAAGTACGCAGTGTACGGTCTAGATGGC
AGAAGACGACAAAGGCTGCTTTGCTCTCGACACTTCACGGAGGGGCATCA
AGGTATCCCCGTTGATGTACACACTTCATCCAATCATGTATGTTACAAAG
CCAGGTCCTCTAGCGCCGTGGTTTCTTGTCCATTTGGCTTTTGAAGTGTG
ATATGTCTTGTATCGATCTTTGTTGGGGTAGTTTGCCAATGTTGCAATCT
CCAGCCTGCCCACCAGCCCTCCGCGGGTCGTGTGTAAAGATGGGCGGTAC
AGCCCACGTCAACTAGGCATCACACCGCACGCGCGCGTACGAATCTCTTC
TTTTTGTGTTGCCTTGACTCTTGACATAAATTTGAATTGCACCATCATAG
TGTACGAGGTGAACAGCTCCCATACGTCGTCCAGTATTGAAATGCGATCG
TCGGCGAATGCATGTCAAGCAATCGCCTTCTGAGTTCGGTTCATCGTCGT
GCTATCTGTGTAGCATCGTTGCCGGAAACGCTCACGACCCTCACGTGGCC
ACTGACTATTTGTGAGTCACCAAGTCCATATTTTTTCGCAGTTTGGCCAT
GGTATTTACTTGTTGACAGTTGACAAATTCCTGTCTTGAGACGAATCTAT
TCGTCTATTCCACGATCGCACCTCTCTTGTGTAGGGACAGCATCAGTAGT
TGAAGCAGCAAGGGCAGGACAGGAGGCCAAGAAGATGGGAGAACAATCTG
GTGGGCAGGTTGCTCTCCCGAATTCAAGGAAGCGGGCACTGACTCTCCAT
CGCCTTCCACGGCAAGTGGATAAGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig1115:19115..20040+

>mRNA_S-dermatodea_contig1115.747.1 ID=mRNA_S-dermatodea_contig1115.747.1|Name=mRNA_S-dermatodea_contig1115.747.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at S-dermatodea_contig1115:19115..20040+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGATGTTTGAAGAGGCCATTGTATGGCACGGCGGGCAGCAGGATGACGGA
GTTTTGCAGCGAACACAAGAGGACGGGTATGGTTAACGTCTTGAACAAAA
TGTGCGCCAGCGAGGGTTGCGTCAAGTACGCAGTGTACGGTCTAGATGGC
AGAAGACGACAAAGGCTGCTTTGCTCTCGACACTTCACGGAGGGGCATCA
AGGGATGTTTGAAGAGGCCATTGTATGGCACGGCGGGCAGCAGGATGACG
GAGTTTTGCAGCGAACACAAGAGGACGGGTATGGTTAACGTCTTGAACAA
AATGTGCGCCAGCGAGGGTTGCGTCAAGTACGCAGTGTACGGTCTAGATG
GCAGAAGACGACAAAGGCTGCTTTGCTCTCGACACTTCACGGAGGGGCAT
CAAGGGACAGCATCAGTAGTTGAAGCAGCAAGGGCAGGACAGGAGGCCAA
GAAGATGGGAGAACAATCTGGTGGGCAGGTTGCTCTCCCGAATTCAAGGA
AGCGGGCACTGACTCTCCATCGCCTTCCACGGCAAGTGGATAAGGGACAG
CATCAGTAGTTGAAGCAGCAAGGGCAGGACAGGAGGCCAAGAAGATGGGA
GAACAATCTGGTGGGCAGGTTGCTCTCCCGAATTCAAGGAAGCGGGCACT
GACTCTCCATCGCCTTCCACGGCAAGTGGATAAG
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