mRNA_S-dermatodea_contig11149.746.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11149.746.1
Unique NamemRNA_S-dermatodea_contig11149.746.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11149.746.1 vs. uniprot
Match: D7FPY1_ECTSI (FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY1_ECTSI)

HSP 1 Score: 462 bits (1189), Expect = 2.240e-153
Identity = 225/254 (88.58%), Postives = 238/254 (93.70%), Query Frame = 1 
Query:    1 PLDILFANIKHAFYQPCNGVIDTKVVIHFSLKHPIMVGKKAHKEIQVSTEAIDSTVNLDGAKSSNYDPDEMVEEQRERQLRKRRNNAFKDFAAKVSKAAKADGQHLEFDIPFDQLGFQGKPFKEASHFFPLMVYIQPTTYALINITDFPFFVVPLNEIEHVHFERVFSSSKTCDLKIIMKENMLENGGEPKTIDMIDQQNKFLNKIMSWLEECEITYTQTAKPWNWKAMMADIRGDNRFYLDTYDDGERKPAGW 762
            PLD L+ANIKHAFYQPCNGVIDTKV++HFSLKHPIMVGKKAHKEIQVSTEAID+TVNLDG K SNYDPDEM+EEQRER +RKRRNNAFKDFA+KV+KAA  DGQ LEFDIPFDQLGF GKPFKEA     LM +IQPTTYALIN+TDFPFFVVPLNEIEHVHFERVFSSSKTCD+KIIMKENMLENGGEPKTIDMIDQ NK+LNKIM WLEECEITYTQTAKPWNWKAMMADIRGDNRFYLDTY+DGERKPAGW
Sbjct:  690 PLDFLYANIKHAFYQPCNGVIDTKVILHFSLKHPIMVGKKAHKEIQVSTEAIDATVNLDGVKRSNYDPDEMMEEQRERGMRKRRNNAFKDFASKVTKAASRDGQSLEFDIPFDQLGFGGKPFKEARTN-TLMGFIQPTTYALINVTDFPFFVVPLNEIEHVHFERVFSSSKTCDMKIIMKENMLENGGEPKTIDMIDQ-NKYLNKIMQWLEECEITYTQTAKPWNWKAMMADIRGDNRFYLDTYEDGERKPAGW 941
[Close]
BLAST of mRNA_S-dermatodea_contig11149.746.1 vs. uniprot
Match: A0A835Z130_9STRA (FACT complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z130_9STRA)

HSP 1 Score: 298 bits (763), Expect = 4.410e-92
Identity = 156/260 (60.00%), Postives = 196/260 (75.38%), Query Frame = 1 
Query:    4 LDILFANIKHAFYQPCNGVIDTKVVIHFSLKHPIMVGKKAHKEIQVSTEAIDSTVNLDGAKSSNYDPDEMVEEQRERQLRKRRNNAFKDFAAKVSKAAKADGQHLEFDIPFDQLGFQGKPFKEASHFFPLMVYIQPTTYALINITDFPFFVVPLNEIEHVHFERVFSSSKTCDLKIIMKENMLENG--GEPKTIDMIDQQNKFLNKIMSWLEECEITYTQTAKPWNWKAMMADIRGDNRFYLDT-----YDDGERKPAGW 762
            ++IL+ANI+ A +QPC G  DTKVV+HF L+HPIMVGKKAHK +QV TEA+DSTVNLD A+ S+YDPDE++EEQ++++LRKR N AFKDFAAKVSK A  + Q LEFDIP+ +LGFQG P KE       MV+IQPTTYAL+N+TD P FVV  ++IEHVHFERV  + +  DLKII + N+  +    EP +I+MI+Q  KFLN+IM WL +  ITYTQT K WNWKA++  +R D RFYLDT      +DG +KPAGW
Sbjct:  504 VEILYANIRLAVFQPCEGN-DTKVVLHFYLRHPIMVGKKAHKNVQVYTEAVDSTVNLDNARRSHYDPDEIMEEQQDKKLRKRLNQAFKDFAAKVSKVAARNQQTLEFDIPYKELGFQGTPHKE-------MVFIQPTTYALLNVTDQPAFVVLTDDIEHVHFERVNPNGRNFDLKIITRANVAADQPPSEPLSINMIEQ--KFLNQIMGWLVDSSITYTQTDKTWNWKAVLNLVREDERFYLDTGKSTEQEDGTKKPAGW 753
[Close]
BLAST of mRNA_S-dermatodea_contig11149.746.1 vs. uniprot
Match: A0A7S3XXU1_HETAK (FACT complex subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXU1_HETAK)

HSP 1 Score: 245 bits (625), Expect = 4.720e-71
Identity = 128/255 (50.20%), Postives = 174/255 (68.24%), Query Frame = 1 
Query:    4 LDILFANIKHAFYQPCNGVIDTKVVIHFSLKHPIMVGKKAHKEIQVSTEAIDSTVNLDGAKSSNYDPDEMVEEQRERQLRKRRNNAFKDFAAKVSKAAKADGQHLEFDIPFDQLGFQGKPFKEASHFFPLMVYIQPTTYALINITDFPFFVVPLNEIEHVHFERVFSSSKTCDLKIIMKENMLENGGEPKTIDMIDQQNKFLNKIMSWLEECEITYTQTAKPWNWKAMMADIRGD-NRFYLDTYDD-GERKPAGW 762
            LD+L+ANI HA + PC G  +T VVIH  LKH ++VGKK H+++Q  TEA++++VNLD A+ S YDPDEMVEEQRER+L KR +  FKDF  K+ K A A GQ L+F++P+  LG+ G P +E       MVY+QPT   L+N+ D PFFVV LN++EHVHFERV  S+K  D+ I+MK+  LE   +PK IDMI+  +K+L++I  WL +   TYT       WKA++  ++ + + FYLD  +  GE KPAGW
Sbjct:  723 LDVLYANIAHAIFSPCKG--ETMVVIHLHLKHHLLVGKKRHRDVQFYTEAMEASVNLDAARKSAYDPDEMVEEQRERELAKRLDATFKDFTRKIEKVAGAHGQKLKFEVPYHDLGWHGTPHRE-------MVYVQPTVSCLVNVVDTPFFVVDLNQVEHVHFERVMFSAKNFDMVIVMKD--LEE--QPKRIDMIE--SKYLDRIQDWLTDMGFTYTSGPANLQWKAILQTVKEEGHHFYLDRDEGTGEAKPAGW 962
[Close]
BLAST of mRNA_S-dermatodea_contig11149.746.1 vs. uniprot
Match: K0SMK5_THAOC (FACT complex subunit n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SMK5_THAOC)

HSP 1 Score: 231 bits (589), Expect = 5.200e-71
Identity = 125/254 (49.21%), Postives = 166/254 (65.35%), Query Frame = 1 
Query:    4 LDILFANIKHAFYQPCNGVIDTKVVIHFSLKHPIMVGKKAHKEIQVSTEAIDSTVNLDGAKSSNYDPDEMVEEQRERQLRKRRNNAFKDFAAKVSKAAKADGQHLEFDIPFDQLGFQGKPFKEASHFFPLMVYIQPTTYALINITDFPFFVVPLNEIEHVHFERVFSSSKTCDLKIIMKENMLENGGEPKTIDMIDQQNKFLNKIMSWLEECEITYTQTAKPWNWKAMMADIRGDNRFYLDTYDDG-ERKPAGW 762
            +DI++ANIKHA +QPC   I   V++HF LK+PIMVGKK  ++IQ  TE +D++  +DG + S YDPDEM +EQRERQLRKR N AFKDF  KV   A+ +G  LEFDIP+  LGF G P KE       MV I PT   L N+T+ PFFVV L+ ++HVHFERV   SK  D+ +I K+   +    P  +DMI  + K  + I  WL + EI+YT+     NWK++M+ + GD+RFY+DT +D   +K AGW
Sbjct:   42 VDIMYANIKHAVFQPCKSEI--MVLVHFHLKNPIMVGKKKQQDIQFFTEVVDASQAVDGNRRSMYDPDEMDDEQRERQLRKRLNEAFKDFCRKVENVARKNGYTLEFDIPYRDLGFMGNPNKE-------MVMIMPTLNCLCNLTETPFFVVDLSNVDHVHFERVTFMSKAFDMVLINKDFTKQ----PWRVDMIPNEEK--DSIQEWLTDMEISYTEGPMNLNWKSIMSTVVGDDRFYMDTEEDEVTQKEAGW 280
[Close]
BLAST of mRNA_S-dermatodea_contig11149.746.1 vs. uniprot
Match: A0A7S4VDK5_9STRA (FACT complex subunit n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VDK5_9STRA)

HSP 1 Score: 231 bits (590), Expect = 3.270e-70
Identity = 121/254 (47.64%), Postives = 165/254 (64.96%), Query Frame = 1 
Query:    4 LDILFANIKHAFYQPCNGVIDTKVVIHFSLKHPIMVGKKAHKEIQVSTEAIDSTVNLDGAKSSNYDPDEMVEEQRERQLRKRRNNAFKDFAAKVSKAAKADGQHLEFDIPFDQLGFQGKPFKEASHFFPLMVYIQPTTYALINITDFPFFVVPLNEIEHVHFERVFSSSKTCDLKIIMKENMLENGGEPKTIDMIDQQNKFLNKIMSWLEECEITYTQTAKPWNWKAMMADIRGDNRFYLDTYDDG-ERKPAGW 762
            +DI++ NIKHA +QPC   I   V++HF L+HPIM+GKK  ++IQ  TE ID++  +D  + S YDPDEM +EQRERQLR++ N AFK+F  KV   AK +G  LEFDIP+  LGF G P KE       MV+IQPT   L+N+T+ PFFVV L++++HVHFERV   SK  D+ +I K+       +P  +DMI   +K    I  WL + E++YT+     NWK +M  + GD+RFY+DT +D   +K AGW
Sbjct:   93 VDIMYPNIKHAIFQPCENEI--MVLVHFHLRHPIMLGKKKQQDIQFFTEVIDASQTVDAGRRSMYDPDEMDDEQRERQLRRKLNEAFKEFCRKVENVAKKNGFSLEFDIPYRDLGFNGNPHKE-------MVFIQPTLNCLVNLTETPFFVVNLSDVDHVHFERVTFMSKAFDIVLINKDF----SKQPWRVDMIPNDDK--ESIQEWLTDMELSYTEGPMNLNWKQIMGTVAGDDRFYMDTEEDEVTKKEAGW 331
[Close]
BLAST of mRNA_S-dermatodea_contig11149.746.1 vs. uniprot
Match: A0A6A5B037_9STRA (FACT complex subunit (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5B037_9STRA)

HSP 1 Score: 228 bits (580), Expect = 1.270e-69
Identity = 117/253 (46.25%), Postives = 163/253 (64.43%), Query Frame = 1 
Query:    4 LDILFANIKHAFYQPCNGVIDTKVVIHFSLKHPIMVGKKAHKEIQVSTEAIDSTVNLDGAKSSNYDPDEMVEEQRERQLRKRRNNAFKDFAAKVSKAAKADGQHLEFDIPFDQLGFQGKPFKEASHFFPLMVYIQPTTYALINITDFPFFVVPLNEIEHVHFERVFSSSKTCDLKIIMKENMLENGGEPKTIDMIDQQNKFLNKIMSWLEECEITYTQTAKPWNWKAMMADIRGDNRFYLDTYDDGERKPAGW 762
            LDIL+ANIKHA +QPC+   +  V+IHF LK+PIM+GKK H+++Q  TE I+S+  LD  + S YDPDE+ EE RER LR++ N  FKDF  KV + ++   + + FDIP+ +LGF G PFKE       MV +QPT + L+++T+FPFF+  L+++EHVHFERVF  SK  D+  + K   L     P  +  I      L +I  WL++  I +T+     NWK +M  I+ D+RFYL+T +DG  KPAGW
Sbjct:  116 LDILYANIKHAIFQPCDK--ELVVLIHFHLKNPIMIGKKKHQDVQFYTEVIESSQALDNRRRSMYDPDELDEENRERSLREKLNLTFKDFCQKVERVSEQIDKTIAFDIPYRELGFSGTPFKE-------MVLLQPTVHCLVSLTEFPFFITLLDDVEHVHFERVFFGSKNFDMVFVYKNFNLV----PVRVSAISTNE--LERIKEWLDDINICFTEGTANLNWKQIMVTIKADDRFYLETDEDGVPKPAGW 353
[Close]
BLAST of mRNA_S-dermatodea_contig11149.746.1 vs. uniprot
Match: F0YPC0_AURAN (FACT complex subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPC0_AURAN)

HSP 1 Score: 224 bits (571), Expect = 1.880e-68
Identity = 114/253 (45.06%), Postives = 163/253 (64.43%), Query Frame = 1 
Query:    4 LDILFANIKHAFYQPCNGVIDTKVVIHFSLKHPIMVGKKAHKEIQVSTEAIDSTVNLDGAKSSNYDPDEMVEEQRERQLRKRRNNAFKDFAAKVSKAAKADGQHLEFDIPFDQLGFQGKPFKEASHFFPLMVYIQPTTYALINITDFPFFVVPLNEIEHVHFERVFSSSKTCDLKIIMKENMLENGGEPKTIDMIDQQNKFLNKIMSWLEECEITYTQTAKPWNWKAMMADIRGDNRFYLDTYDDGERKPAGW 762
            +D+++AN+KH+ +QPC    +  V+IHF LK+P+MVGKK   ++Q STE +D++V LD A+ S YDPDE+ EEQRER LRK+ N  FK+F  K+ + AK     LEFDIP+  L F G P +E       MV IQPT + L+N+T+ PFF+V L+ +EHVHFER    +   D+ II+K   L     P +++ +  Q   L+ I  WL +C +TYT      +WK++M  +R D+RFY +T ++GE KPAGW
Sbjct:   44 IDLMYANVKHSLFQPCEN--EVMVLIHFHLKNPVMVGKKKTHDVQFSTEVVDASVALDSARRSMYDPDELDEEQRERHLRKKLNEMFKEFCKKMERVAKQHHYDLEFDIPYRDLSFHGVPNRE-------MVLIQPTVHCLVNLTETPFFIVELDHVEHVHFERCTLRATNFDMVIILKNFELA----PLSVNAVPVQE--LDAIQEWLTDCSLTYTAGQASMSWKSVMNLVRSDDRFYEETDENGEPKPAGW 281
[Close]
BLAST of mRNA_S-dermatodea_contig11149.746.1 vs. uniprot
Match: A0A7S2M437_9STRA (FACT complex subunit (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M437_9STRA)

HSP 1 Score: 230 bits (586), Expect = 6.180e-68
Identity = 127/254 (50.00%), Postives = 165/254 (64.96%), Query Frame = 1 
Query:    4 LDILFANIKHAFYQPCNGVIDTKVVIHFSLKHPIMVGKKAHKEIQVSTEAIDSTVNLDGAKSSNYDPDEMVEEQRERQLRKRRNNAFKDFAAKVSKAAKADGQHLEFDIPFDQLGFQGKPFKEASHFFPLMVYIQPTTYALINITDFPFFVVPLNEIEHVHFERVFSSSKTCDLKIIMKENMLENGGEPKTIDMIDQQNKFLNKIMSWLEECEITYTQTAKPWNWKAMMADIRGDNRFYLDTYDDG-ERKPAGW 762
            +DI++AN+KHA +QPC   I   V+IHF LK+PIMVGKK  ++IQ  TE ID++  +D  K S YDPDEM +EQRERQL+KR N AFKDFA KV   A+ +G  LEFDIP+  L F G P KE       MV IQPT   L N+T+ PFFVV L++I+HVHFERV   SK  D+ ++ K+   +    P  IDMI  + K  + I  WL + EI+YT+     NWK +M+ + GD+RFY+DT +D    K AGW
Sbjct:  388 VDIMYANVKHAIFQPCENEI--MVLIHFHLKNPIMVGKKKQQDIQFFTEVIDASQAVDAGKRSMYDPDEMDDEQRERQLKKRLNEAFKDFARKVEGVARKNGYSLEFDIPYRDLSFIGNPHKE-------MVSIQPTLNCLCNLTETPFFVVDLSDIDHVHFERVTFMSKAFDMVLVNKDFTKQ----PFRIDMIANEEK--DSIQEWLTDMEISYTEGPMNLNWKQIMSHVLGDDRFYMDTEEDEVTAKEAGW 626
[Close]
BLAST of mRNA_S-dermatodea_contig11149.746.1 vs. uniprot
Match: A0A397D979_9STRA (FACT complex subunit (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D979_9STRA)

HSP 1 Score: 228 bits (580), Expect = 6.460e-68
Identity = 117/253 (46.25%), Postives = 163/253 (64.43%), Query Frame = 1 
Query:    4 LDILFANIKHAFYQPCNGVIDTKVVIHFSLKHPIMVGKKAHKEIQVSTEAIDSTVNLDGAKSSNYDPDEMVEEQRERQLRKRRNNAFKDFAAKVSKAAKADGQHLEFDIPFDQLGFQGKPFKEASHFFPLMVYIQPTTYALINITDFPFFVVPLNEIEHVHFERVFSSSKTCDLKIIMKENMLENGGEPKTIDMIDQQNKFLNKIMSWLEECEITYTQTAKPWNWKAMMADIRGDNRFYLDTYDDGERKPAGW 762
            LDIL+ANIKHA +QPC+   +  V+IHF LK+PIM+GKK H+++Q  TE I+S+  LD  + S YDPDE+ EE RER LR++ N  FKDF  KV + ++   + + FDIP+ +LGF G PFKE       MV +QPT + L+++T+FPFF+  L+++EHVHFERVF  SK  D+  + K   L     P  +  I      L +I  WL++  I +T+     NWK +M  I+ D+RFYL+T +DG  KPAGW
Sbjct:  176 LDILYANIKHAIFQPCDK--ELVVLIHFHLKNPIMIGKKKHQDVQFYTEVIESSQALDNRRRSMYDPDELDEENRERSLREKLNLTFKDFCQKVERVSEQIDKTIAFDIPYRELGFSGTPFKE-------MVLLQPTVHCLVSLTEFPFFITLLDDVEHVHFERVFFGSKNFDMVFVYKNFNLV----PVRVSAISTNE--LERIKEWLDDINICFTEGTANLNWKQIMVTIKADDRFYLETDEDGVPKPAGW 413
[Close]
BLAST of mRNA_S-dermatodea_contig11149.746.1 vs. uniprot
Match: A0A7S0GEE7_9STRA (FACT complex subunit n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GEE7_9STRA)

HSP 1 Score: 233 bits (593), Expect = 7.750e-68
Identity = 121/254 (47.64%), Postives = 167/254 (65.75%), Query Frame = 1 
Query:    4 LDILFANIKHAFYQPCNGVIDTKVVIHFSLKHPIMVGKKAHKEIQVSTEAIDSTVNLDGAKSSNYDPDEMVEEQRERQLRKRRNNAFKDFAAKVSKAAKADGQHLEFDIPFDQLGFQGKPFKEASHFFPLMVYIQPTTYALINITDFPFFVVPLNEIEHVHFERVFSSSKTCDLKIIMKENMLENGGEPKTIDMIDQQNKFLNKIMSWLEECEITYTQTAKPWNWKAMMADIRGDNRFYLDTYDDG-ERKPAGW 762
            +D++++NIKHA YQPC   I   V+IHF L++PIM+GKK  K+IQV TE +D+++ +D  + S YDPDEM +EQRERQLRK+ N AFK+F  KV   AK +G  LEFDIP+  LGF G P  +       MV++QPT   L+N+TD PFFV  L+E++HVHFERV   SKT D+ +I K+       +P  +DMI   +K  + I  WL + E++YT+     NWK +M    GD+RFY++T +D   +K AGW
Sbjct:  414 VDVMYSNIKHAIYQPCENEI--MVLIHFHLRNPIMLGKKRQKDIQVFTEVVDASLQVDAGRRSMYDPDEMDDEQRERQLRKKLNQAFKEFCRKVESTAKKNGYSLEFDIPYRDLGFNGTPHNQ-------MVFVQPTLNCLVNVTDTPFFVTDLSEVDHVHFERVTFMSKTFDVVLINKDF----SKQPWRVDMIPNSDK--DAIQDWLTDMELSYTEGPMNLNWKQIMLTCAGDDRFYMNTEEDEITQKEAGW 652
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11149.746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPY1_ECTSI2.240e-15388.58FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835Z130_9STRA4.410e-9260.00FACT complex subunit n=1 Tax=Tribonema minus TaxID... [more]
A0A7S3XXU1_HETAK4.720e-7150.20FACT complex subunit n=1 Tax=Heterosigma akashiwo ... [more]
K0SMK5_THAOC5.200e-7149.21FACT complex subunit n=1 Tax=Thalassiosira oceanic... [more]
A0A7S4VDK5_9STRA3.270e-7047.64FACT complex subunit n=1 Tax=Ditylum brightwellii ... [more]
A0A6A5B037_9STRA1.270e-6946.25FACT complex subunit (Fragment) n=1 Tax=Aphanomyce... [more]
F0YPC0_AURAN1.880e-6845.06FACT complex subunit n=1 Tax=Aureococcus anophagef... [more]
A0A7S2M437_9STRA6.180e-6850.00FACT complex subunit (Fragment) n=1 Tax=Skeletonem... [more]
A0A397D979_9STRA6.460e-6846.25FACT complex subunit (Fragment) n=1 Tax=Aphanomyce... [more]
A0A7S0GEE7_9STRA7.750e-6847.64FACT complex subunit n=1 Tax=Proboscia inermis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11149contigS-dermatodea_contig11149:757..6758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score464.5
Seed ortholog evalue3.1e-128
Seed eggNOG ortholog2880.D7FPY1
Preferred nameSPT16
KEGG koko:K20093
GOsGO:0000003,GO:0000228,GO:0000785,GO:0000790,GO:0000791,GO:0001672,GO:0003006,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005719,GO:0005730,GO:0006139,GO:0006325,GO:0006333,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008023,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010228,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031491,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0035101,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902275,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.Fact complex subunit
EggNOG OGsCOG5406@1,KOG1189@2759
EC3.6.4.12
COG Functional cat.BKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons6
Model size765
Cds size765
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11149.746.1prot_S-dermatodea_contig11149.746.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11149 757..6758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924189.3063383-CDS-S-dermatodea_contig11149:756..8941622924189.3063383-CDS-S-dermatodea_contig11149:756..894Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11149 757..894 +
1694079079.4953723-CDS-S-dermatodea_contig11149:756..8941694079079.4953723-CDS-S-dermatodea_contig11149:756..894Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11149 757..894 +
1622924189.3186252-CDS-S-dermatodea_contig11149:2728..28721622924189.3186252-CDS-S-dermatodea_contig11149:2728..2872Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11149 2729..2872 +
1694079079.5105886-CDS-S-dermatodea_contig11149:2728..28721694079079.5105886-CDS-S-dermatodea_contig11149:2728..2872Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11149 2729..2872 +
1622924189.3286576-CDS-S-dermatodea_contig11149:3744..38551622924189.3286576-CDS-S-dermatodea_contig11149:3744..3855Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11149 3745..3855 +
1694079079.5303702-CDS-S-dermatodea_contig11149:3744..38551694079079.5303702-CDS-S-dermatodea_contig11149:3744..3855Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11149 3745..3855 +
1622924189.3375354-CDS-S-dermatodea_contig11149:4255..44021622924189.3375354-CDS-S-dermatodea_contig11149:4255..4402Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11149 4256..4402 +
1694079079.5420969-CDS-S-dermatodea_contig11149:4255..44021694079079.5420969-CDS-S-dermatodea_contig11149:4255..4402Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11149 4256..4402 +
1622924189.3486059-CDS-S-dermatodea_contig11149:5583..56371622924189.3486059-CDS-S-dermatodea_contig11149:5583..5637Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11149 5584..5637 +
1694079079.550884-CDS-S-dermatodea_contig11149:5583..56371694079079.550884-CDS-S-dermatodea_contig11149:5583..5637Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11149 5584..5637 +
1622924189.3594773-CDS-S-dermatodea_contig11149:6587..67581622924189.3594773-CDS-S-dermatodea_contig11149:6587..6758Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11149 6588..6758 +
1694079079.559026-CDS-S-dermatodea_contig11149:6587..67581694079079.559026-CDS-S-dermatodea_contig11149:6587..6758Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11149 6588..6758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11149.746.1

>prot_S-dermatodea_contig11149.746.1 ID=prot_S-dermatodea_contig11149.746.1|Name=mRNA_S-dermatodea_contig11149.746.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=255bp
PLDILFANIKHAFYQPCNGVIDTKVVIHFSLKHPIMVGKKAHKEIQVSTE
AIDSTVNLDGAKSSNYDPDEMVEEQRERQLRKRRNNAFKDFAAKVSKAAK
ADGQHLEFDIPFDQLGFQGKPFKEASHFFPLMVYIQPTTYALINITDFPF
FVVPLNEIEHVHFERVFSSSKTCDLKIIMKENMLENGGEPKTIDMIDQQN
KFLNKIMSWLEECEITYTQTAKPWNWKAMMADIRGDNRFYLDTYDDGERK
PAGW*
back to top

mRNA from alignment at S-dermatodea_contig11149:757..6758+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11149.746.1 ID=mRNA_S-dermatodea_contig11149.746.1|Name=mRNA_S-dermatodea_contig11149.746.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6002bp|location=Sequence derived from alignment at S-dermatodea_contig11149:757..6758+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCTGGACATCCTTTTCGCGAACATCAAGCACGCCTTTTACCAGCCGTG
CAACGGGGTTATCGACACCAAGGTAGTCATCCACTTCAGCCTCAAGCACC
CCATCATGGTGGGCAAGAAGGCCCACAAGGAAATCCAGGTACGTGACGTA
CCGTCATCGTTTTTTTATTTATTTTATTTTTATCAGGCTTAAAACCAAAC
CGACCGACCCACCAATGGTTGCCGATCCCGCTCGGGGTCACATGAGAAAT
CGTTCGGGGTCTGTCTGTGCATGCAGGATGTCTTACGAAATACATGAATG
ATGCGTTCATCAAAAGTGACGTCGATAGTAAATAATACATTCATCAATAC
TGACGTCGATAGTAACTGATACGTGAATCAAAAGTGGCGTCGATAGTTAA
TGATATATTAATCAAAAAGAGGCGTCGATAGTAAATGATACATGAATGAA
TAGTGACGTCGATAGTAAACGATACATGAAGCAATAGTGGCGTCGATAGT
AAACATTACGTTAATCTATAGTGATGTACTTGTATGAAATATTCACATGC
AGGTTTTCCTGTAAATCAGGGGGTCAGGCGCTCCGGGCGGCGTGCGGGTT
ATACATCTCTTGTGATGTCTGGCCATCAGTTTTTTGTTCGGTGTAGGGGT
GCTGGATTTTCAATTGCTCTTTCTTGTGCCTTCAGGTGACCACGAGCGGG
ATCAGCATCCACTTTTGCATTTGCAAAAATGGCGGGCCGGTCGGTTGCAT
GTGTGAGAATCAACCAATCAAATCAATCAAATGCACGAGATAGTCCGTAG
GGGTAAAAGAGGTTAGCATCGAGCGTGCCACAATTTTATTTGTGATGGCA
CGGGGCATGTAGGAGTTATGTACGTGGAGCGGGAAGTAGGCATGTATCGG
TGTTACAATGGTATGTTGCTAAGGAGGCTGGCATTCAGTAGTGCGAGTTG
GATGCTGCCGACCCCTTTGGTGCGGTGCTTTTGTGAGGGAGCCTTCAGGG
AAGGTTGTGTACAAGGTTTGTTTTCAGCAGGCCCCTCAAGCTCCTAGGTA
TGTCTCGTCTGTTCCGTGTATGCATGTATGCATTATGTATGTATGTATGT
ATGTATGTATGTATGTATGTATGTATATACACATGATATGTGTGTGTGTT
TGGTACAATGAAAATATTTGTATATTGTTGTTCCTTCTTTGTGTATGTGT
ATATATATAAGTGTATCTTATGTCTGTACCAATATACAGCCTTTGATCTA
TATCTATACAAGTATGCAAGTATCTAAGTTTTTAGGTTAAGGTTGTATGA
TATATTCGTTGTGTCTGTGCCTGCTGGTATGGTAACGGCATGTGTATCTA
TGTGACAACATGTATGTGAGATTTGTTGGCACGAGTGAGGACTTGGGTAC
GTTTCTATACCGTCCATGTCCTGTGTTATTTAGTCCAGCGCGAACTCACC
TTCCAATGTATCAGGTAGCCCGTGTCCTGCTGTAAAATTCGGTTCAGGGC
AGTGTCGTACCAGTATATTCCACTGTCTTCCCCTGCCATTATTAATAGAG
CTACACACTGTATCGTTTGTCTCGCTCTGGGTATTCTGAGGGTATTTTCG
ATACGCACTAAATATATAATACATAGAGCGGTCTGCCTACCCGCAACGAT
AAAAGACGCTTGTGCAACTACGTAATGCTGTAGAGCTAATATACATAGCT
TCCTCTCGGTAGTACTGCCCCCTTAGTAAAGCACCCTCTTTTGACGGTTT
TTTGCTCTTATTGTTTTTTTTAAGAAGAAACAAAACCTACTCTTACATTA
TACTACAAGTACTTTTCCTGGTGTCGACGGAGTCGATCGATTCGTACAGC
CCCTACTAAAACACGCCTTTTGTTTACGTTTTTTTGCTATACTCATTTTT
AAAAACTACTGTTTCATATATGTATGTATGTATGTATGTATGTATGTTTT
TTGTTTTGTTTTTTTTTTCCAGGTGTCGACGGAGGCGATCGATTCAACGG
TTAACCTCGATGGCGCGAAGAGTTCTAACTACGACCCGGACGAGATGGTG
GAGGAGCAGCGGGAGAGGCAACTCAGGAAACGCCGCAACAACGCCTTCAA
GGACTTCGCCGCCAAGGTTAGCGAGAGAGAGACCCCGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCTATAGCTATATTAATTTATACCG
CTTTGCAAGTTTTTTTATGGCGACTTGAGAGAGTTGATTTTTCTGCAGAA
AATATTAGCGATTTAGAGTTGAGCGATGAAACGTTAATTGAAGCCAAAGT
GTCCGAGTGATTTCAGAGGTGGCCTTTATAAACAAGTGTTGTAAAATAGT
AGAATTTTTTCACCTCACGGGCGTAGCCTAAACTACCTACTATTACAGTA
ACCCTTTTGGGACTGAGGCTGTTATCGGGTAACTGCTTGCTGTCATGATT
TACCCCTTTGGGACTAAGCCTGGGGACGAAGCCTGTTTTCGGGTAACTGT
TGGCTACCATAATAGCAAACAGTTACCCGAAAACAGCCCTAGTCCCAAGA
CAAAAGCGTACAGTATATAATAGTAGCAAAAAGTTACCCGAAAACAGCCT
TTAGTCCCAAAAGGGTTATAAAGAGTTAATATATTTATTACGCCGGTGAA
GTGTGCGTTGGCGCAAGTTACTATTCTGTGAGGTGCCACTCTATAATCCC
TATATGTGACATTTGGCATCACGAATTGTATAGGAAAATCGACATCAACG
AAAAATGCGAACTCTAAAGTGCTACTAAAAAAACTTGCAAAGCGGCATGA
TATTAATTTCAAATATATATATGCATATGAGATTTTGCGTTTCTAACCTG
CTCTTCTCGCTTCGCTTTTGTGTGTGTGTGTGTGTGTTTTTTTTTGTGTT
TTTTGTGTTTTTTTGGTTAAATGCCAATTCTTCCGTCCGTCCGCTCGTTT
GTGTGTTCGTTCGTGCGTGTGTTTGTATGTTGTGGCAGGTATCGAAGGCC
GCGAAGGCCGATGGTCAGCACCTAGAGTTCGACATCCCCTTCGACCAGCT
CGGCTTCCAGGGGAAGCCTTTCAAGGAGGCAAGCCATTTTTTTCCCCTAG
TCTCGTCTCTCTATCGTTTTCGTCAATTCCATGACTTTCAGGAGGGAAAA
ACTCGTCATTTTGCAAGCCTTGTTTTTTTTCTTTTTCCTAGTCTTGTCTC
TGTATCGTTTTCGCCAATTCCATGACTTTCAGGAGGGGAAAACCGTCATT
TTGCAAAGGAGGCAAAAGCTGTGTGTGTGTTGCGTACTTGTATACAAAGG
CGGAAGTGGCACCCATAAGGTTTGTTGCAGAAAAGCGAGGCTGTTTTGAT
AATTCGCCCCTCTCCTCTCCTCCCTCCCCCGCCCACCCCCCACCCCCGCT
GCCCCCCCTTATTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTT
TATTTTTTGGCGTAATGAATGTGAACTATCCTGTAATACGTGTGAGCAGA
TGGTGTACATCCAGCCTACTACGTACGCTCTGATCAACATCACCGACTTC
CCCTTCTTCGTGGTCCCGCTGAACGAGATCGAGCACGTGCACTTCGAGCG
TGTCTTCTCCAGCTCCAAGACTTGCGACCTCAAGATCATCATGAAGGTTC
GTGTCTGTGTGTCTTTGTGTGTGTATGTGTGTGTGTATGTGTGTGTGCAG
TGTGTGTATATGTGTGTTTGTGTAGTGTGTGGGTGTGTGTGTGTTTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATGTGTGTTTGTGT
AGTGTGTGTGTGTGTGTGTGTGTTTGTGTGCTTGTGCGTGTCTTTGTGTG
TGTGTATGTGTGTGTGTGTAAAAAAAAAAACTGTTGCGGAGGGGCATATA
TAATAGTTTGCGAACGACCAATGGCCCCCGGATGTCTTGTTCGGAATTTC
CAAAAACAAAATATGCAATAGTGTACAGAAAACTTGAAAAACGCCCGTGA
GATGAAAAACGCTACTCTTTTCACCACTTGTTTGTAAGGGCCCCCTCATC
ACTGTGAATTTTGGTTCGCAAGTGTTTCACCGCTCAACTCTAAATCGCTG
TTATTTTCTGCAGAAGGATCAACTCTAATAAATCACTAAAAAAGGGGCAA
AGCGGCTATTCATAAATGCAAAGATGATGCTCTTATGTAGTGTTGATAAA
CATTTTTTTGGTACGGAGGGATGCTTGCATCCTAAATCGCGTGCATGCAT
ACTCTGGTGGGAGTTGTCGTATGCACGTGAGGCTATTTTTTTTTTGTTCT
TTTTTTTTTTCTTTTTTTTTTTCTTTGAGTTATTTTCATGGGTCCTATGT
CTTTTCTCTTTTGTGCTGTACATGTATGTATAAGTAGATATCTGATTAGC
GAGTTCTCCTTGACTCTCTGCTATTGTAGGATCTGAACACAAGTCGCGTC
TGAGTAACCCGATCGGCTTTACATGTGATCGGCTTTACGCGAAATCAAAC
AATCAATCCATGACTCAATTATTGGTGTTTCACACCCACCCAAGGAGGTG
GCGCAGCATTGTCGCGCGCGAAACTACACTGGTTTGTTTTTACTGGCACA
CGACGAACCACGACGAGCACACCTTGTGGGAAGGACACGATTAAGAGAAA
AAACAGCACAAGCATGCATGCATGCATTGCAGTCCTGCCGGCCTGCCCGT
GCGGTTTGATTCAATGAAGGTTGCAGACGCGCTCGACCCTTCCCCCACAC
CTAATCGCTGCTGTTTCCTCCCTTGTCTATGTGTATGTGCGTGTTGTTTC
TCGTGTCTCGCTTGCCCTTGCCGCCAGGAAAACATGCTGGAGAACGGGGG
CGAGCCGAAGACGATCGACATGATCGACCAGGTGAGTGTGTTGTGTTCTC
ATCCGAGGCGTTGTGTATGTGATACTTGTACAGTACATATACTGGTGTTG
TACGTTGCTGAGGCGTTTCGATCGCTTCACCGACCGGTTTCCAACGCCCT
TGCTGTTGATTGTGCGCTGTATTATAATAGTAGCAGACTAGTGGGTAGCC
ACGGCTACGATACGCCCGTGTGGTGGTGCGTTGGCTCAAATCAAATCACT
TCTCCGTAAAGGTACCACTCTAAAAATCACTAAAATATGACATGTGGCGT
CGCGAATTGTGTACCAGGAAATTCGGCATCCAAGGTCAAGTCTACAGTAT
AAAGCGTCGTTAATAAAATGTGCAAAGCCGTAGTTCTTAGTAAGTATGGT
TTGCTCGCGTGAGAGGTTCTATCTCGCCCGTGTGATGTTTAATGTTTATC
CCCAGTGTGGTGGAATCGGTCTGCGATGTCGTCGGTCGTTCCGGGCCTTT
TGAGAAGGGACGTTTGCCGTGGGATAGATTTGACGCGAGGGCATCGTGTT
AGAAAAGGGGGGGGGGGGGGGGGGGCATAATCGGGCGTTTGAACAAAAAA
AAAGGAGAGGGGGGGGGTCTTGTGTGGGTGTTTTTTTTTTTTTTACCAAA
CTTAACCGCAACTTTTTAATTTTTATTCATCGATATTCTGGGNNNNNNNN
NNGTTGCTCTCTATATAGGAGGGGTTTTGTGGGGTGGAGGTAGGGTGGGG
GGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGTCATAATC
GTGCGTTTGACACAAAAAAGACGAGAGGAGCGGTCTCTCTTGTGGTCGTT
TTTTCATTTTATACACAACTATACGCTACATTTATAATTCTCATTCATGC
ATATGCTGAGGGGTCGTCTGTTTCCATCTGTTGCCGTTACCTGTTGCGTG
TTCTTGCTGCCCGGGGTCAATCTCGTTCGAGCAGAACAAATTTCTTAACA
AGATCATGTCCTGGCTGGAAGAGTGCGAGATCACCTACACGCAGACAGCC
AAGCCGTGGAACTGGAAGGCCATGATGGCCGACATCAGAGGCGACAACCG
CTTTTACCTCGACACCTACGACGATGGGGAGCGGAAGCCGGCGGGGTGGT
GA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11149:757..6758+

>mRNA_S-dermatodea_contig11149.746.1 ID=mRNA_S-dermatodea_contig11149.746.1|Name=mRNA_S-dermatodea_contig11149.746.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at S-dermatodea_contig11149:757..6758+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCTGGACATCCTTTTCGCGAACATCAAGCACGCCTTTTACCAGCCGTG
CAACGGGGTTATCGACACCAAGGTAGTCATCCACTTCAGCCTCAAGCACC
CCATCATGGTGGGCAAGAAGGCCCACAAGGAAATCCAGCCGCTGGACATC
CTTTTCGCGAACATCAAGCACGCCTTTTACCAGCCGTGCAACGGGGTTAT
CGACACCAAGGTAGTCATCCACTTCAGCCTCAAGCACCCCATCATGGTGG
GCAAGAAGGCCCACAAGGAAATCCAGGTGTCGACGGAGGCGATCGATTCA
ACGGTTAACCTCGATGGCGCGAAGAGTTCTAACTACGACCCGGACGAGAT
GGTGGAGGAGCAGCGGGAGAGGCAACTCAGGAAACGCCGCAACAACGCCT
TCAAGGACTTCGCCGCCAAGGTGTCGACGGAGGCGATCGATTCAACGGTT
AACCTCGATGGCGCGAAGAGTTCTAACTACGACCCGGACGAGATGGTGGA
GGAGCAGCGGGAGAGGCAACTCAGGAAACGCCGCAACAACGCCTTCAAGG
ACTTCGCCGCCAAGGTATCGAAGGCCGCGAAGGCCGATGGTCAGCACCTA
GAGTTCGACATCCCCTTCGACCAGCTCGGCTTCCAGGGGAAGCCTTTCAA
GGAGGCAAGCCATTTTTTTCCCCTAGTATCGAAGGCCGCGAAGGCCGATG
GTCAGCACCTAGAGTTCGACATCCCCTTCGACCAGCTCGGCTTCCAGGGG
AAGCCTTTCAAGGAGGCAAGCCATTTTTTTCCCCTAATGGTGTACATCCA
GCCTACTACGTACGCTCTGATCAACATCACCGACTTCCCCTTCTTCGTGG
TCCCGCTGAACGAGATCGAGCACGTGCACTTCGAGCGTGTCTTCTCCAGC
TCCAAGACTTGCGACCTCAAGATCATCATGAAGATGGTGTACATCCAGCC
TACTACGTACGCTCTGATCAACATCACCGACTTCCCCTTCTTCGTGGTCC
CGCTGAACGAGATCGAGCACGTGCACTTCGAGCGTGTCTTCTCCAGCTCC
AAGACTTGCGACCTCAAGATCATCATGAAGGAAAACATGCTGGAGAACGG
GGGCGAGCCGAAGACGATCGACATGATCGACCAGGAAAACATGCTGGAGA
ACGGGGGCGAGCCGAAGACGATCGACATGATCGACCAGCAGAACAAATTT
CTTAACAAGATCATGTCCTGGCTGGAAGAGTGCGAGATCACCTACACGCA
GACAGCCAAGCCGTGGAACTGGAAGGCCATGATGGCCGACATCAGAGGCG
ACAACCGCTTTTACCTCGACACCTACGACGATGGGGAGCGGAAGCCGGCG
GGGTGGTGACAGAACAAATTTCTTAACAAGATCATGTCCTGGCTGGAAGA
GTGCGAGATCACCTACACGCAGACAGCCAAGCCGTGGAACTGGAAGGCCA
TGATGGCCGACATCAGAGGCGACAACCGCTTTTACCTCGACACCTACGAC
GATGGGGAGCGGAAGCCGGCGGGGTGGTGA
back to top