mRNA_S-dermatodea_contig11144.744.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11144.744.1
Unique NamemRNA_S-dermatodea_contig11144.744.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11144.744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11144contigS-dermatodea_contig11144:6529..7003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size266
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924189.1587355-CDS-S-dermatodea_contig11144:6528..66001622924189.1587355-CDS-S-dermatodea_contig11144:6528..6600Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11144 6529..6600 +
1694079079.3800724-CDS-S-dermatodea_contig11144:6528..66001694079079.3800724-CDS-S-dermatodea_contig11144:6528..6600Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11144 6529..6600 +
1622924189.1711226-CDS-S-dermatodea_contig11144:6809..70011622924189.1711226-CDS-S-dermatodea_contig11144:6809..7001Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11144 6810..7001 +
1694079079.389331-CDS-S-dermatodea_contig11144:6809..70011694079079.389331-CDS-S-dermatodea_contig11144:6809..7001Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11144 6810..7001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11144.744.1prot_S-dermatodea_contig11144.744.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11144 6529..7001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11144.744.1

>prot_S-dermatodea_contig11144.744.1 ID=prot_S-dermatodea_contig11144.744.1|Name=mRNA_S-dermatodea_contig11144.744.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=88bp
RLSQDVEAEGQDRQEGQTMGAAEQFELAREAAEQQWRLYMLLQGSPAQEE
KSPDPSPGWVFRVCASIAVVMAAPGVAFVASVAMIAVV
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mRNA from alignment at S-dermatodea_contig11144:6529..7003+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11144.744.1 ID=mRNA_S-dermatodea_contig11144.744.1|Name=mRNA_S-dermatodea_contig11144.744.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=475bp|location=Sequence derived from alignment at S-dermatodea_contig11144:6529..7003+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTTGTCTCAGGATGTGGAAGCGGAGGGGCAAGACCGGCAAGAGGGACA
AACCATGGGTGCCGCCGAGCAGGTTTGCAGAATAAAATATTTGAGATTTC
CTCCAAAATGGATGCAAGTTGCGCCGCCCGTTGCTCTGCGGGCGCAGTAG
AGTTGGGTGGAGTTGAGTGGTAACCGCCTTCGTGCGCACATGGTAACATC
GTAGATGGCAGACTAAGGCGTCTGCTTCTGCCATCTGGTTCTGCTTCCTC
TTACCCCTCCCACGCACTGCCTTCGCATTAGTTCGAACTGGCACGTGAAG
CGGCCGAGCAACAATGGCGTTTGTACATGCTCCTCCAGGGTTCCCCTGCC
CAGGAGGAAAAGTCCCCGGATCCATCACCAGGCTGGGTATTCAGAGTCTG
TGCTTCGATCGCAGTCGTGATGGCGGCACCTGGGGTAGCCTTTGTCGCGT
CGGTGGCAATGATTGCTGTGGTGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11144:6529..7003+

>mRNA_S-dermatodea_contig11144.744.1 ID=mRNA_S-dermatodea_contig11144.744.1|Name=mRNA_S-dermatodea_contig11144.744.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at S-dermatodea_contig11144:6529..7003+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTTGTCTCAGGATGTGGAAGCGGAGGGGCAAGACCGGCAAGAGGGACA
AACCATGGGTGCCGCCGAGCAGAGGTTGTCTCAGGATGTGGAAGCGGAGG
GGCAAGACCGGCAAGAGGGACAAACCATGGGTGCCGCCGAGCAGTTCGAA
CTGGCACGTGAAGCGGCCGAGCAACAATGGCGTTTGTACATGCTCCTCCA
GGGTTCCCCTGCCCAGGAGGAAAAGTCCCCGGATCCATCACCAGGCTGGG
TATTCAGAGTCTGTGCTTCGATCGCAGTCGTGATGGCGGCACCTGGGGTA
GCCTTTGTCGCGTCGGTGGCAATGATTGCTGTGGTGTTCGAACTGGCACG
TGAAGCGGCCGAGCAACAATGGCGTTTGTACATGCTCCTCCAGGGTTCCC
CTGCCCAGGAGGAAAAGTCCCCGGATCCATCACCAGGCTGGGTATTCAGA
GTCTGTGCTTCGATCGCAGTCGTGATGGCGGCACCTGGGGTAGCCTTTGT
CGCGTCGGTGGCAATGATTGCTGTGGTG
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