mRNA_S-dermatodea_contig1114.743.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1114.743.1
Unique NamemRNA_S-dermatodea_contig1114.743.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1114.743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1114contigS-dermatodea_contig1114:13701..14211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size513
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924189.0440133-UTR-S-dermatodea_contig1114:13700..138271622924189.0440133-UTR-S-dermatodea_contig1114:13700..13827Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1114 13701..13827 +
1694079079.3018436-UTR-S-dermatodea_contig1114:13700..138271694079079.3018436-UTR-S-dermatodea_contig1114:13700..13827Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1114 13701..13827 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924189.0561552-CDS-S-dermatodea_contig1114:13827..142111622924189.0561552-CDS-S-dermatodea_contig1114:13827..14211Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1114 13828..14211 +
1694079079.3101678-CDS-S-dermatodea_contig1114:13827..142111694079079.3101678-CDS-S-dermatodea_contig1114:13827..14211Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1114 13828..14211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1114.743.1prot_S-dermatodea_contig1114.743.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1114 13828..14211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1114.743.1

>prot_S-dermatodea_contig1114.743.1 ID=prot_S-dermatodea_contig1114.743.1|Name=mRNA_S-dermatodea_contig1114.743.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=128bp
MKQQQQREVKAHAGRYFSPVKRANRRGAHVVAVLCWTDRPTLFGIWACVE
RVLIDSRYFVYICCGVCDDAPEHRELDHKGSWLIPTATVLALFFICMPTD
PASMIPTTPFFICALRDHILLYFNIRKG
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mRNA from alignment at S-dermatodea_contig1114:13701..14211+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1114.743.1 ID=mRNA_S-dermatodea_contig1114.743.1|Name=mRNA_S-dermatodea_contig1114.743.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=511bp|location=Sequence derived from alignment at S-dermatodea_contig1114:13701..14211+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAAGGCTTAGCGGTTGAAAGGCCGTAGGTGTTCCTCTCTGCCGCTGCTA
TAGTGACGTGCCAGCCAGCCAGCCAGCGCGCGTGCAGGTTGCGCGAGAGT
GAGGGAATATCGAGAGGAAAAATCTGCATGAAACAACAGCAGCAGCGAGA
AGTGAAAGCACACGCGGGTAGATATTTCTCCCCCGTGAAGAGAGCGAACC
GCCGCGGGGCGCACGTTGTTGCTGTGTTGTGTTGGACCGACCGACCGACC
CTTTTCGGGATCTGGGCGTGTGTCGAGCGCGTGCTGATCGACTCGCGGTA
TTTCGTGTATATTTGTTGCGGTGTGTGTGACGATGCGCCCGAACACCGCG
AGCTTGATCACAAAGGCAGTTGGTTGATCCCAACGGCTACTGTGTTGGCA
TTGTTCTTTATCTGCATGCCGACCGACCCGGCTAGCATGATACCTACCAC
CCCCTTTTTTATTTGCGCTTTGAGAGACCACATACTATTATACTTCAACA
TACGCAAGGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1114:13701..14211+

>mRNA_S-dermatodea_contig1114.743.1 ID=mRNA_S-dermatodea_contig1114.743.1|Name=mRNA_S-dermatodea_contig1114.743.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at S-dermatodea_contig1114:13701..14211+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAACAACAGCAGCAGCGAGAAGTGAAAGCACACGCGGGTAGATATTT
CTCCCCCGTGAAGAGAGCGAACCGCCGCGGGGCGCACGTTGTTGCTGTGT
TGTGTTGGACCGACCGACCGACCCTTTTCGGGATCTGGGCGTGTGTCGAG
CGCGTGCTGATCGACTCGCGGTATTTCGTGTATATTTGTTGCGGTGTGTG
TGACGATGCGCCCGAACACCGCGAGCTTGATCACAAAGGCAGTTGGTTGA
TCCCAACGGCTACTGTGTTGGCATTGTTCTTTATCTGCATGCCGACCGAC
CCGGCTAGCATGATACCTACCACCCCCTTTTTTATTTGCGCTTTGAGAGA
CCACATACTATTATACTTCAACATACGCAAGGGAATGAAACAACAGCAGC
AGCGAGAAGTGAAAGCACACGCGGGTAGATATTTCTCCCCCGTGAAGAGA
GCGAACCGCCGCGGGGCGCACGTTGTTGCTGTGTTGTGTTGGACCGACCG
ACCGACCCTTTTCGGGATCTGGGCGTGTGTCGAGCGCGTGCTGATCGACT
CGCGGTATTTCGTGTATATTTGTTGCGGTGTGTGTGACGATGCGCCCGAA
CACCGCGAGCTTGATCACAAAGGCAGTTGGTTGATCCCAACGGCTACTGT
GTTGGCATTGTTCTTTATCTGCATGCCGACCGACCCGGCTAGCATGATAC
CTACCACCCCCTTTTTTATTTGCGCTTTGAGAGACCACATACTATTATAC
TTCAACATACGCAAGGGA
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