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Homology
BLAST of mRNA_S-dermatodea_contig11138.740.1 vs. uniprot
Match: D7FYK0_ECTSI (SPX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYK0_ECTSI) HSP 1 Score: 100 bits (248), Expect = 4.230e-22 Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query: 88 MKFGKRIRAELPPGLLRGSVDYKSLKKLAKQLRPA--ESGAHXXXXXXXXLQKQTQQGRCTQDEFFSSIETEKDKVAKFYHSKEAWCFLALETTRGALFG 381
MKFGK+IR EL P LRGSV+YK+LK++AK+LR + G X + ++GR +EF + +E EK+KVA+FY S+EAWCFLALE+TRGALFG
Sbjct: 1 MKFGKKIRTELSPDQLRGSVNYKALKQIAKKLRRSLVAGGGXXQGLTHQQXXXEQERGR---EEFLTRLEIEKEKVAEFYRSREAWCFLALESTRGALFG 97
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 383 |
| Cds size | 294 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622924188.9388545-UTR-S-dermatodea_contig11138:2571..2658 | 1622924188.9388545-UTR-S-dermatodea_contig11138:2571..2658 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig11138 2572..2658 - |
| 1694079079.2372487-UTR-S-dermatodea_contig11138:2571..2658 | 1694079079.2372487-UTR-S-dermatodea_contig11138:2571..2658 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig11138 2572..2658 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11138.740.1 >prot_S-dermatodea_contig11138.740.1 ID=prot_S-dermatodea_contig11138.740.1|Name=mRNA_S-dermatodea_contig11138.740.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=98bp
MKFGKRIRAELPPGLLRGSVDYKSLKKLAKQLRPAESGAHHHHQQQQQLQ
KQTQQGRCTQDEFFSSIETEKDKVAKFYHSKEAWCFLALETTRGALFG back to topmRNA from alignment at S-dermatodea_contig11138:299..2658- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig11138.740.1 ID=mRNA_S-dermatodea_contig11138.740.1|Name=mRNA_S-dermatodea_contig11138.740.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2360bp|location=Sequence derived from alignment at S-dermatodea_contig11138:299..2658- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGGCGAGGGACGGGGGGCAGGGGGGCGGCATCGAACAAAACACGCTCGC
GGCAAGTTTGCCTCGCCTCGGGTAACACCCCCAGGGCATGAAATTCGGTA
AGCGCATCCGAGCCGAGCTCCCCCCCGGCCTGCTTAGGGGGAGCGTCGAC
TACAAGTCCTTGAAGAAGCTCGCCAAGCAGCTCCGGCCTGCGGAAAGCGG
TGCACACCACCATCACCAGCAGCAGCAGCAGCTACAGAAGCAGACGCAGC
AAGGACGATGCACGCAAGACGAGTTCTTCTCGAGCATCGAGACGGAAAAG
GACAAGGTGTGCCGCCGTTTCCATGCTTTATGGTGCCACTCCCCCCCAAC
CTCCCCCTCCCTCCCCCCGCGCCCGCGATAGGGATTTTTGTTTTTGTTTT
AACGCCACGGGGGGTGCGCGGATTTTGTCTTGACACCTTTGTCTTGTCGA
TTTTTTATCTCGGCCGCGGCTACTTACTGCACGTACAAAACGCCTCGCTC
AACGTTTCTTGCCTGCGAGCTACCATACCTGCTTTAGTTATCGTTGTGGT
CGCGATGAGATAACAGCGTGAGCAGCCAGCCAGGCATACACGGTGCAAAA
CGCGACCGCTCTGCCGGGAGACTGCAATGCCGCGAATCGCTACTATAATA
CACACATACGATGCCGCGCGTGCACTCATAAATCAAGTAAGAAAAAGCAC
CAACCGTTACGATGTACCAGTATACCAGTAACTGATAAAAAACAAACAGC
ACCTGTCTCTCAGTTAGTAACGGGTTTGAGACGCGGCGTAGGAGAGAAGG
GGGGGCCTTGCCACACACACACAAAAAAAAAAAGAGCCCAAACACCGGCT
CAAACGTGGCGGCGATCCAGAGCGCCCTTAATTCACACCATAGAGCAGCA
GCGCACACGGCCCCCACCGCCCCACAAGAAACACCTTAAACAAGGCCTTA
GGTACCATCACACAATGGCGGGCGAGGAAACACGAGAAAGAGCCACCGCT
AGAAACAAACAAGCCTCCCCGGTAACAATTGCGCGCGGGGGAGGAGGGGG
GGGGGAGCACTGGCATTGCTGAAATAGCTCGGCGGCTTTTCTCAAGCCAA
AGAACGCGCTGCCGCCGCCGCCCCCCCCTCGTCCCCCCCGCTTCCCTAGC
CACAACACCCCGCCTCCTCCCCCCCCTGCTTCTAGCCACAACCCTGTCAT
TGCTCCGTCGGCTTCGCTCGTAGAAGGCACAACCCTGCGACCTGCAACTG
TCCTCCGTGCGGGCACGGGGGGGGGGGAGGGGCGAGGGACGCTTTGGGTC
CCGCAGCAACGGAATGCGGGGCACAGCCGGGTCGGTTCGGCGATGCGACG
AAGTGGTGTTTCGGGGGGAAATGGAGCGGAGAGAAGCAGACGGAGGGCGC
CAAGAGCAACCGAGGCCGATAACAACGGGCTTCCCGGTTGTCGGCGGTGC
GCGCGGGGGCGGGGGCGGGCAACGAGAGAGGCTCAAGCTTCTTCAAGCCA
GCCGCTTGCCTCCTGCAGCAATGCAACCAACACTGGACTAGGTTTTTTCT
CTCGTGCCGCTTTTGATGCATGGATGGATGGATGGATGATTAAACGACTT
TTTATTTTATTTTTTATTTTTATTTTTTTGGCTTGCTCTCTGTTTTTTTT
TGTTTTTTTGTTTGCGGGGTGTTTAATTTTACACCCCTCTTTTGATGTTT
TTATGTTCTGTCGCCGTCTTACCAATAGGCCCGGTCGCGCTTAGCTTTGT
TTTGCACATTTTAAACCGCGACCGCTGCCGAGAGCACGGCTGTACGATAC
ATTTAGGTCCCCCGCGTCCGATGCGTTCGTCCTAGAAAGCCCGTGCCCCG
CGCTGTTCGGTCGGACCTAGCCTTCCACACCATGGGAGCTCACACCTAGG
AAGGACTTCGTGTTGACAGGAGTCACGGGCCTTTGTTGTTTGGCCGTGAT
ACCTCTCGGTTGGCGCTTCCTTTGTCCGTGTCGGCAAGGTGCGGCACCTT
TTCTTAAAAAAACTATTATAGACTCAAGAGATATACCTGGTACTAGGCAT
ACTTCGTACCCAATCCCCGATGTCGCTGCTTCCCCCCCCCCCACCCGGGC
GCCCTCTGCCCATCGTAACTACCCTCGCCCCTTTCGCCCGAGCCTGCCCC
CCCCCCCCCCGCCCCGCCCCGCCCCTTCCCCCCTTCCTCTTACCCTTCGC
GTCCGCTCGATACTACGACCTCCCTTATCTCGCGTCCACGTGAAACTCGA
AATATGCCGGTGGCACCGGGCTGTTTCGCCCGAAGGTCGCCAAGTTCTAC
CACTCTAAAGAGGCTTGGTGCTTTCTAGCGCTGGAGACGACGAGGGGGGC
GCTGTTCGGG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig11138:299..2658- >mRNA_S-dermatodea_contig11138.740.1 ID=mRNA_S-dermatodea_contig11138.740.1|Name=mRNA_S-dermatodea_contig11138.740.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at S-dermatodea_contig11138:299..2658- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAATTCGGTAAGCGCATCCGAGCCGAGCTCCCCCCCGGCCTGCTTAG
GGGGAGCGTCGACTACAAGTCCTTGAAGAAGCTCGCCAAGCAGCTCCGGC
CTGCGGAAAGCGGTGCACACCACCATCACCAGCAGCAGCAGCAGCTACAG
AAGCAGACGCAGCAAGGACGATGCACGCAAGACGAGTTCTTCTCGAGCAT
CGAGACGGAAAAGGACAAGATGAAATTCGGTAAGCGCATCCGAGCCGAGC
TCCCCCCCGGCCTGCTTAGGGGGAGCGTCGACTACAAGTCCTTGAAGAAG
CTCGCCAAGCAGCTCCGGCCTGCGGAAAGCGGTGCACACCACCATCACCA
GCAGCAGCAGCAGCTACAGAAGCAGACGCAGCAAGGACGATGCACGCAAG
ACGAGTTCTTCTCGAGCATCGAGACGGAAAAGGACAAGGTCGCCAAGTTC
TACCACTCTAAAGAGGCTTGGTGCTTTCTAGCGCTGGAGACGACGAGGGG
GGCGCTGTTCGGGGTCGCCAAGTTCTACCACTCTAAAGAGGCTTGGTGCT
TTCTAGCGCTGGAGACGACGAGGGGGGCGCTGTTCGGG back to top
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