mRNA_S-dermatodea_contig11137.739.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11137.739.1
Unique NamemRNA_S-dermatodea_contig11137.739.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11137.739.1 vs. uniprot
Match: A0A6H5LGC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGC4_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.240e-7
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:    1 QACAAAGEWERALKIFAGLPSVGVQPGQLCFDAALVACAIGGQGALAVSLLEEMTSLAAEE 183
            QACAAAG+W+RAL  F+G  S G++PGQLCF             A A SLL EM +L +E+
Sbjct:  301 QACAAAGQWDRALATFSGAKSDGIEPGQLCFXXXXXXXXXXXXXARATSLLAEMATLESEQ 361
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11137.739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LGC4_9PHAE2.240e-749.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11137contigS-dermatodea_contig11137:1785..3457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924188.8539674-CDS-S-dermatodea_contig11137:1784..19291622924188.8539674-CDS-S-dermatodea_contig11137:1784..1929Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11137 1785..1929 -
1694079079.183515-CDS-S-dermatodea_contig11137:1784..19291694079079.183515-CDS-S-dermatodea_contig11137:1784..1929Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11137 1785..1929 -
1622924188.8698845-CDS-S-dermatodea_contig11137:3368..34571622924188.8698845-CDS-S-dermatodea_contig11137:3368..3457Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11137 3369..3457 -
1694079079.197504-CDS-S-dermatodea_contig11137:3368..34571694079079.197504-CDS-S-dermatodea_contig11137:3368..3457Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11137 3369..3457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11137.739.1prot_S-dermatodea_contig11137.739.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11137 1785..3457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11137.739.1

>prot_S-dermatodea_contig11137.739.1 ID=prot_S-dermatodea_contig11137.739.1|Name=mRNA_S-dermatodea_contig11137.739.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=78bp
QACAAAGEWERALKIFAGLPSVGVQPGQLCFDAALVACAIGGQGALAVSL
LEEMTSLAAEEPDREWEDNAASYYGTPK
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mRNA from alignment at S-dermatodea_contig11137:1785..3457-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11137.739.1 ID=mRNA_S-dermatodea_contig11137.739.1|Name=mRNA_S-dermatodea_contig11137.739.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1673bp|location=Sequence derived from alignment at S-dermatodea_contig11137:1785..3457- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCCTGCGCTGCTGCGGGAGAGTGGGAACGGGCCCTCAAGATTTTCGC
GGGGTTGCCCTCGGTGGGGGTTCAACCCGGCCAGCTGTGGTGAGGAAGAA
TTTTGACGAAGATGTACATACGAATGAAGGGAGGGTGCCTCTGCTGTTAG
TTTGTAATGTTTTTGACTGGTGTTGACGCTACGGCGGTGGGTGTTTGCGG
GGCGGAGAATCGAGACGTTTGGGCGTAAATGCCGATGCTGAATCTCGTGG
TCGGTCGCGGTCGGGGGGGCCGGAGCGGCAACTGCTGTATTGGTATCTAC
ACTCAGCGTCCTTCCGGCGTGTGTAGCGTGTGGGTTGTCAATGTCGTGGA
CTAGTTCCCCGATGACGCTCGCTCCGTCCTCTTTTGTCTTGCAAGTATTT
CGGCCGCCGTGATAATCATCGGATCCACACGAGAGGTCAGTAGATAGTGA
GTTGCATTGGGAATATTTTTTGTCTTAAGAATTGGGACCGGCGGAGAGGA
GGGGGGGGGGTACTTAGCATTCAAGGATTTAACTATAGCCTCAGCGTATC
CCATCTAACCGTGGTGTATGTTGTGTGCATGCGGCACTTCCGCGATGGCG
CGGAGATCAAAAGGCAACCCTTTGCTGTGCTTGGTGTAGTGGCATCTACT
GAATGTGCAGCTTGCGATTTCCCCGCATGTCCTACTCGACCCATGGAGTG
CAGTCCGTTTTGGCGTCAGAAACGCGAGGGATGGTGGCTGCAGTAGCAAC
TGGTTTCATCCTTGTGAAGTGCAGCCTGGTCGGCGAAAATCCGGCATATG
GCCCCTTGGTATTGTTCGGACGCGTGGTCTATGTCCGTCAGGATACGACA
TGCGTTGTACCTGAGTACCCCCCCGCCCCCCCCGGCGGCCGCCCCCACCC
CGAACCGCACCGCAAGAACAGCGCTCAGCGCCGAAACCGGCCACAAGAGA
CAAGACTANNNNNNNNNNGAGCGAGAGATGGGCCGGGGGCGGGCTGCTTG
GTTGCTTCGGGGACGCGTGGTCAATGGGCCAACAGCTAAGGCATGCAAAA
CATGAGTACGCCCCCCCCCTCCCCCCCCCGCCGAAGACAGTAACAATACT
GAGAGATACGATTTGGCCCGGCCCGAAAAGGCGAGAATTGAAGTATAATA
GATAGAATGGGAATTCGAAGCTCGTGAGTGCAGTGTAACTAAGGGAGTGT
AGAGTGTAACTTATTGTACTGAGTGTACTGGCCTCTGAAAATACACGTGT
ACACTGTGTAACGATTGAATTTGCCTCCGAAATTACACGTGTACATGGTG
TACCTGATTGTACGCGTGTCCCAAATAACACCTACACCTACACTACACGA
CACTACACTCACGACCTTTAAGTCCTTTTTGAGCCCTCTTGGGCGACATA
GGAAGGAACGATTGGCCATCAGTGATCGATCTTGTGGTCATTGGCTTCAC
AGCTAACGCGCTCAAACCTTGAGTACCACCCCCCTTCCCCCCCCCACCCC
CCGTGCTGTCGCACTTTCCCCGCAAAAGTTTCGACGCTGCTCTTGTGGCC
TGCGCGATCGGCGGTCAGGGGGCGCTGGCCGTTTCACTGCTGGAGGAGAT
GACGTCACTAGCCGCAGAAGAACCAGATAGGGAATGGGAGGACAACGCTG
CTTCTTACTATGGAACACCTAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11137:1785..3457-

>mRNA_S-dermatodea_contig11137.739.1 ID=mRNA_S-dermatodea_contig11137.739.1|Name=mRNA_S-dermatodea_contig11137.739.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at S-dermatodea_contig11137:1785..3457- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCCTGCGCTGCTGCGGGAGAGTGGGAACGGGCCCTCAAGATTTTCGC
GGGGTTGCCCTCGGTGGGGGTTCAACCCGGCCAGCTGTGCAGGCCTGCGC
TGCTGCGGGAGAGTGGGAACGGGCCCTCAAGATTTTCGCGGGGTTGCCCT
CGGTGGGGGTTCAACCCGGCCAGCTGTGTTTCGACGCTGCTCTTGTGGCC
TGCGCGATCGGCGGTCAGGGGGCGCTGGCCGTTTCACTGCTGGAGGAGAT
GACGTCACTAGCCGCAGAAGAACCAGATAGGGAATGGGAGGACAACGCTG
CTTCTTACTATGGAACACCTAAGTTTCGACGCTGCTCTTGTGGCCTGCGC
GATCGGCGGTCAGGGGGCGCTGGCCGTTTCACTGCTGGAGGAGATGACGT
CACTAGCCGCAGAAGAACCAGATAGGGAATGGGAGGACAACGCTGCTTCT
TACTATGGAACACCTAAG
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