mRNA_S-dermatodea_contig11127.736.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11127.736.1
Unique NamemRNA_S-dermatodea_contig11127.736.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11127.736.1 vs. uniprot
Match: D8LDL2_ECTSI (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDL2_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 3.690e-31
Identity = 54/60 (90.00%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 GACEGVCACSTCHVILDGEVFDGLPEPSEDEEDMLDLAFGLTETSRLGCQVIITPEMDGI 180
            GACEGVCACSTCHVI+  EVFD LPE SEDEEDMLDLAFGLTETSRLGCQVI+TPEMDGI
Sbjct:  119 GACEGVCACSTCHVIMSNEVFDQLPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGI 178
[Close]
BLAST of mRNA_S-dermatodea_contig11127.736.1 vs. uniprot
Match: A0A836C6V2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6V2_9STRA)

HSP 1 Score: 110 bits (274), Expect = 4.600e-29
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 GACEGVCACSTCHVILDGEVFDGLPEPSEDEEDMLDLAFGLTETSRLGCQVIITPEMDGI 180
            GACEGVCACSTCHVIL+ +++  LPEPSEDEEDMLD AFGLT TSRLGCQV++TPEMDGI
Sbjct:  104 GACEGVCACSTCHVILEDDIYAALPEPSEDEEDMLDQAFGLTATSRLGCQVVVTPEMDGI 163
[Close]
BLAST of mRNA_S-dermatodea_contig11127.736.1 vs. uniprot
Match: A0A6U3SGD3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SGD3_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.190e-27
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:    1 GACEGVCACSTCHVILDGEVFDGLPEPSEDEEDMLDLAFGLTETSRLGCQVIITPEMDGI 180
            GACEGVCACSTCHVIL  +VFD LPE SEDEEDMLD+AFGL+ TSRLGCQVI+T EM+G+
Sbjct:   92 GACEGVCACSTCHVILSDDVFDSLPEASEDEEDMLDMAFGLSATSRLGCQVIVTDEMEGM 151
[Close]
BLAST of mRNA_S-dermatodea_contig11127.736.1 vs. uniprot
Match: A0A1Z5K9M2_FISSO (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9M2_FISSO)

HSP 1 Score: 102 bits (253), Expect = 3.040e-26
Identity = 44/59 (74.58%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 GACEGVCACSTCHVILDGEVFDGLPEPSEDEEDMLDLAFGLTETSRLGCQVIITPEMDG 177
            GACEGVCACSTCH+I+  +++D LP+PSEDEEDMLD+AFGLT+TSRLGCQVI+T +M+G
Sbjct:   73 GACEGVCACSTCHLIMPQDLYDILPDPSEDEEDMLDMAFGLTDTSRLGCQVIVTKDMEG 131
[Close]
BLAST of mRNA_S-dermatodea_contig11127.736.1 vs. uniprot
Match: A0A4P9ZA23_9ASCO (Mitochondrial matrix iron-sulfur protein n=1 Tax=Metschnikowia bicuspidata TaxID=27322 RepID=A0A4P9ZA23_9ASCO)

HSP 1 Score: 101 bits (252), Expect = 3.980e-26
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 GACEGVCACSTCHVILDGEVFDGLPEPSEDEEDMLDLAFGLTETSRLGCQVIITPEMDGI 180
            GAC G CACSTCHVI+D E +D +PEP +DE DMLDLAFGLTETSRLGCQV++T E+DGI
Sbjct:   74 GACGGSCACSTCHVIVDPEYYDSIPEPDDDENDMLDLAFGLTETSRLGCQVVMTKEIDGI 133
[Close]
BLAST of mRNA_S-dermatodea_contig11127.736.1 vs. uniprot
Match: A0A2G5B4T1_COERN (Ferredoxin n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5B4T1_COERN)

HSP 1 Score: 102 bits (254), Expect = 4.940e-26
Identity = 44/60 (73.33%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:    1 GACEGVCACSTCHVILDGEVFDGLPEPSEDEEDMLDLAFGLTETSRLGCQVIITPEMDGI 180
            GACEG CACSTCHVIL   ++D LPEPS++E DMLDLAFGLT+TSRLGCQV+++PEM+G+
Sbjct:  105 GACEGACACSTCHVILPDNIYDRLPEPSDEENDMLDLAFGLTDTSRLGCQVMLSPEMEGM 164
[Close]
BLAST of mRNA_S-dermatodea_contig11127.736.1 vs. uniprot
Match: G3BE81_CANTC (Ferredoxin n=1 Tax=Candida tenuis (strain ATCC 10573 / BCRC 21748 / CBS 615 / JCM 9827 / NBRC 10315 / NRRL Y-1498 / VKM Y-70) TaxID=590646 RepID=G3BE81_CANTC)

HSP 1 Score: 102 bits (253), Expect = 5.710e-26
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 GACEGVCACSTCHVILDGEVFDGLPEPSEDEEDMLDLAFGLTETSRLGCQVIITPEMDGI 180
            GAC G CACSTCH+I+D E +D +PEPS+DE DMLDLAFGLTETSRLGCQ+ +TPE+DG+
Sbjct:  101 GACGGSCACSTCHMIVDPEFYDDIPEPSDDENDMLDLAFGLTETSRLGCQIHMTPELDGV 160
[Close]
BLAST of mRNA_S-dermatodea_contig11127.736.1 vs. uniprot
Match: G8Y8E5_PICSO (Piso0_003823 protein n=1 Tax=Pichia sorbitophila (strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC 10061 / NRRL Y-12695) TaxID=559304 RepID=G8Y8E5_PICSO)

HSP 1 Score: 101 bits (252), Expect = 6.090e-26
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 GACEGVCACSTCHVILDGEVFDGLPEPSEDEEDMLDLAFGLTETSRLGCQVIITPEMDGI 180
            GAC G CACSTCH+I+D E +D +PEP +DE DMLDLAFGLTETSRLGCQV++T E+DGI
Sbjct:   90 GACGGSCACSTCHIIVDPEYYDAIPEPDDDENDMLDLAFGLTETSRLGCQVVMTKELDGI 149
[Close]
BLAST of mRNA_S-dermatodea_contig11127.736.1 vs. uniprot
Match: A0A0C3E8D6_9AGAM (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C3E8D6_9AGAM)

HSP 1 Score: 101 bits (251), Expect = 7.360e-26
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 GACEGVCACSTCHVILDGEVFDGLPEPSEDEEDMLDLAFGLTETSRLGCQVIITPEMDG 177
            GACEG  ACSTCHVIL+ +V+D LPEPS+DE DMLDLAFGLT+TSRLGCQV++T EMDG
Sbjct:   80 GACEGSIACSTCHVILEPDVYDVLPEPSDDENDMLDLAFGLTDTSRLGCQVLVTKEMDG 138
[Close]
BLAST of mRNA_S-dermatodea_contig11127.736.1 vs. uniprot
Match: A0A2H0QFZ7_9PROT (2Fe-2S ferredoxin n=1 Tax=Alphaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_44_7 TaxID=1973901 RepID=A0A2H0QFZ7_9PROT)

HSP 1 Score: 99.8 bits (247), Expect = 7.530e-26
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 GACEGVCACSTCHVILDGEVFDGLPEPSEDEEDMLDLAFGLTETSRLGCQVIITPEMDGI 180
            GACEG  ACSTCHVI++ E FD LPE SEDEEDMLDLAFGLT TSRLGCQ+II+ E+DGI
Sbjct:   37 GACEGSLACSTCHVIVEEEFFDRLPEASEDEEDMLDLAFGLTHTSRLGCQIIISEELDGI 96
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11127.736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDL2_ECTSI3.690e-3190.002Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A836C6V2_9STRA4.600e-2981.672Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A6U3SGD3_9STRA2.190e-2780.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1Z5K9M2_FISSO3.040e-2674.582Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A4P9ZA23_9ASCO3.980e-2675.00Mitochondrial matrix iron-sulfur protein n=1 Tax=M... [more]
A0A2G5B4T1_COERN4.940e-2673.33Ferredoxin n=1 Tax=Coemansia reversa (strain ATCC ... [more]
G3BE81_CANTC5.710e-2673.33Ferredoxin n=1 Tax=Candida tenuis (strain ATCC 105... [more]
G8Y8E5_PICSO6.090e-2673.33Piso0_003823 protein n=1 Tax=Pichia sorbitophila (... [more]
A0A0C3E8D6_9AGAM7.360e-2677.972Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A2H0QFZ7_9PROT7.530e-2678.332Fe-2S ferredoxin n=1 Tax=Alphaproteobacteria bact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11127contigS-dermatodea_contig11127:306..1125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue2.2e-24
Seed eggNOG ortholog2880.D8LDL2
Preferred nameFDX1L
KEGG koko:K22071
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006091,GO:0006629,GO:0006694,GO:0006700,GO:0006790,GO:0007553,GO:0007554,GO:0008150,GO:0008152,GO:0008202,GO:0008207,GO:0008610,GO:0009055,GO:0009058,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010565,GO:0010566,GO:0010817,GO:0010893,GO:0016043,GO:0016125,GO:0016226,GO:0016491,GO:0019216,GO:0019218,GO:0019222,GO:0022607,GO:0022900,GO:0031163,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0032350,GO:0032352,GO:0034754,GO:0042445,GO:0042446,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045834,GO:0045940,GO:0045966,GO:0045998,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0048037,GO:0048518,GO:0048522,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0050794,GO:0050810,GO:0051094,GO:0051186,GO:0051239,GO:0051240,GO:0051536,GO:0051537,GO:0051540,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090030,GO:0090031,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:2000026
EggNOG free text desc.2 iron, 2 sulfur cluster binding
EggNOG OGsCOG0633@1,KOG3309@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924188.5857203-CDS-S-dermatodea_contig11127:305..3541622924188.5857203-CDS-S-dermatodea_contig11127:305..354Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11127 306..354 -
1694079079.034997-CDS-S-dermatodea_contig11127:305..3541694079079.034997-CDS-S-dermatodea_contig11127:305..354Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11127 306..354 -
1622924188.5952258-CDS-S-dermatodea_contig11127:994..11251622924188.5952258-CDS-S-dermatodea_contig11127:994..1125Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11127 995..1125 -
1694079079.046968-CDS-S-dermatodea_contig11127:994..11251694079079.046968-CDS-S-dermatodea_contig11127:994..1125Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11127 995..1125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11127.736.1prot_S-dermatodea_contig11127.736.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11127 306..1125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11127.736.1

>prot_S-dermatodea_contig11127.736.1 ID=prot_S-dermatodea_contig11127.736.1|Name=mRNA_S-dermatodea_contig11127.736.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=60bp
GACEGVCACSTCHVILDGEVFDGLPEPSEDEEDMLDLAFGLTETSRLGCQ
VIITPEMDGI
back to top

mRNA from alignment at S-dermatodea_contig11127:306..1125-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11127.736.1 ID=mRNA_S-dermatodea_contig11127.736.1|Name=mRNA_S-dermatodea_contig11127.736.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=820bp|location=Sequence derived from alignment at S-dermatodea_contig11127:306..1125- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGCTTGCGAGGGAGTTTGCGCATGCTCGACGTGCCACGTAATTTTAGA
CGGGGAGGTTTTCGATGGGCTCCCGGAACCCAGCGAGGACGAGGAGGACA
TGCTCGACTTGGCCTTCGGGCTGACCGAGACGTGAGTATGGAGATTTTCA
CGCGCGTGCGGGGCATTGCATGCTCGCAAGCCTCGGCGGTGCAAAGCCCT
GTAGCTTTAACCCTTTTGGTACTACTACTAGCCCCCTGTTTGGAGCGCCT
GTTAGCACGTAATGAGGCGTGCTTGAGGCGGGACCCTGGGGAGCTCCATG
GGTTATGACGCAGGAATGAGAGAGAACGGGGCCGAAGGAAATCGGGGCTG
TAGCTGTCGACTGGCATCGAAATAGTTCTTGGTCGTTTCGGAGAGCCCTA
TTGATTATTAATACTAATTTAATTTAATTTAATAGTACCAAAAGGGTTAA
AGTTAAGTACGGTCCCTCGTAATAGCGTGAATCCTCGCAATAATCGTCCA
TACCCGTTTGTCCCCATGTCTGCCATGTTGCCAGTTTCGCAGCGGAAGCT
GTATCATATTCAGAACATGTGGTTTTGAGTTTTGAGTTTTGAGTTTTGAG
TTTTTCGCGCATCCGCTTACTGTAGTGGTGCGAGTTGTCTCGGGTTATGT
TCGATGTCGTACGGCGTGTTGCTCCTTTTGCGAAAGGGCTTTCGTCACGC
CCCGGCATGCTGCTGAGTACACTTGATTCAGTCCCGCCACTGTCTTTGCA
TACCGTGTGCTGGTGGACCAGGTCGCGCCTCGGCTGTCAAGTCATCATTA
CGCCAGAGATGGACGGCATC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11127:306..1125-

>mRNA_S-dermatodea_contig11127.736.1 ID=mRNA_S-dermatodea_contig11127.736.1|Name=mRNA_S-dermatodea_contig11127.736.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at S-dermatodea_contig11127:306..1125- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGCTTGCGAGGGAGTTTGCGCATGCTCGACGTGCCACGTAATTTTAGA
CGGGGAGGTTTTCGATGGGCTCCCGGAACCCAGCGAGGACGAGGAGGACA
TGCTCGACTTGGCCTTCGGGCTGACCGAGACGGTGCTTGCGAGGGAGTTT
GCGCATGCTCGACGTGCCACGTAATTTTAGACGGGGAGGTTTTCGATGGG
CTCCCGGAACCCAGCGAGGACGAGGAGGACATGCTCGACTTGGCCTTCGG
GCTGACCGAGACGTCGCGCCTCGGCTGTCAAGTCATCATTACGCCAGAGA
TGGACGGCATCGTCGCGCCTCGGCTGTCAAGTCATCATTACGCCAGAGAT
GGACGGCATC
back to top