mRNA_S-dermatodea_contig1112.732.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1112.732.1
Unique NamemRNA_S-dermatodea_contig1112.732.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1112.732.1 vs. uniprot
Match: D7FYJ3_ECTSI (NADAR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ3_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 3.490e-10
Identity = 34/95 (35.79%), Postives = 48/95 (50.53%), Query Frame = 1 
Query:    1 CTEQYLMASEADLIGDERSRTAKYTPTIPSVIKHVGKLAKEYEPTAWEQHRECVAFREIYPRV-------QKLLNTNLTRLAEATSFDRLWGIPL 264
            C EQY+MA +A L GD  S         P   K +G+    Y+   W+QH+  +  R  Y +        Q+LL+T    LAEA+ +DR+WGI L
Sbjct:   87 CAEQYMMAEKAKLFGDNSSWQKIMATPSPREHKDLGRGVSGYDQNVWDQHKMRIVARGNYAKFTQNEMMGQRLLDTGEKLLAEASPYDRVWGIGL 181
[Close]
BLAST of mRNA_S-dermatodea_contig1112.732.1 vs. uniprot
Match: A0A6H5KMH8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMH8_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.710e-9
Identity = 33/95 (34.74%), Postives = 46/95 (48.42%), Query Frame = 1 
Query:    1 CTEQYLMASEADLIGDERSRTAKYTPTIPSVIKHVGKLAKEYEPTAWEQHRE-------CVAFREIYPRVQKLLNTNLTRLAEATSFDRLWGIPL 264
            C EQY+M+  A L GD  S       T P   K +G+  + ++   WE+ RE       C  F + +     LL T    LAEA+ FDR+WGI +
Sbjct:  280 CGEQYMMSENAKLFGDMTSYEKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLTGLCAKFAQNHDMKHHLLETGTRLLAEASPFDRVWGIGM 374
[Close]
BLAST of mRNA_S-dermatodea_contig1112.732.1 vs. uniprot
Match: A0A8H4INB5_9PEZI (NADAR domain-containing protein n=1 Tax=Botryosphaeria dothidea TaxID=55169 RepID=A0A8H4INB5_9PEZI)

HSP 1 Score: 59.7 bits (143), Expect = 5.520e-9
Identity = 32/93 (34.41%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:    1 CTEQYLMASEADLIGDERSRTAKYTPTIPSVIKHVGKLAKEYEPTAWEQHRECVAFREIYPRV-------QKLLNTNLTRLAEATSFDRLWGI 258
            C EQ++M S+A + GD+ S+TA      P   K +G+  K ++   W++ +  V     Y +        ++LL T    LAEA+SFDR+WGI
Sbjct:   35 CAEQWMMWSKARMAGDDSSQTAILKTKEPRKQKSLGRKVKGFDDAKWDEIKSAVVEEGNYLKFTQNESLRKRLLETGDRELAEASSFDRVWGI 127
[Close]
BLAST of mRNA_S-dermatodea_contig1112.732.1 vs. uniprot
Match: A0A6H5JRZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.810e-8
Identity = 31/95 (32.63%), Postives = 48/95 (50.53%), Query Frame = 1 
Query:    1 CTEQYLMASEADLIGDERSRTAKYTPTIPSVIKHVGKLAKEYEPTAWEQHRECVAFREIYPRV-------QKLLNTNLTRLAEATSFDRLWGIPL 264
            C EQ++M+ +A L GD  S       T P   K +G+  + ++   WE+ RE +    +Y ++       Q +L T    LAEA+ FDR WGI +
Sbjct:  266 CGEQFMMSEKAKLFGDMTSNDNIMAATDPKTHKFLGRNVRRFDYAEWERRREEIMRTGLYAKLAQNHDMKQHVLETGTHLLAEASPFDRAWGIGM 360
[Close]
BLAST of mRNA_S-dermatodea_contig1112.732.1 vs. uniprot
Match: A0A6H5JDD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 5.110e-8
Identity = 31/95 (32.63%), Postives = 47/95 (49.47%), Query Frame = 1 
Query:    1 CTEQYLMASEADLIGDERSRTAKYTPTIPSVIKHVGKLAKEYEPTAWEQHRECVAFREIYPRVQK-------LLNTNLTRLAEATSFDRLWGIPL 264
            C EQ++M+ +A L GD  S       T P   K +G+  + ++   WE+ RE +     Y +  +       LL T    LAEA+ FDR+WGI +
Sbjct:  105 CGEQFMMSEKAKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRVWGIGM 199
[Close]
BLAST of mRNA_S-dermatodea_contig1112.732.1 vs. uniprot
Match: A0A6H5JFD5_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD5_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 5.160e-8
Identity = 31/95 (32.63%), Postives = 47/95 (49.47%), Query Frame = 1 
Query:    1 CTEQYLMASEADLIGDERSRTAKYTPTIPSVIKHVGKLAKEYEPTAWEQHRECVAFREIYPRVQK-------LLNTNLTRLAEATSFDRLWGIPL 264
            C EQ++M+ +A L GD  S       T P   K +G+  + ++   WE+ RE +     Y +  +       LL T    LAEA+ FDR+WGI +
Sbjct:  455 CGEQFMMSEKAKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRVWGIGM 549
[Close]
BLAST of mRNA_S-dermatodea_contig1112.732.1 vs. uniprot
Match: A0A6H5K4L7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4L7_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 5.210e-8
Identity = 31/95 (32.63%), Postives = 47/95 (49.47%), Query Frame = 1 
Query:    1 CTEQYLMASEADLIGDERSRTAKYTPTIPSVIKHVGKLAKEYEPTAWEQHRECVAFREIYPRVQK-------LLNTNLTRLAEATSFDRLWGIPL 264
            C EQ++M+ +A L GD  S       T P   K +G+  + ++   WE+ RE +     Y +  +       LL T    LAEA+ FDR+WGI +
Sbjct:  198 CGEQFMMSEKAKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRVWGIGM 292
[Close]
BLAST of mRNA_S-dermatodea_contig1112.732.1 vs. uniprot
Match: A0A6H5K8W4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W4_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 5.250e-8
Identity = 31/95 (32.63%), Postives = 47/95 (49.47%), Query Frame = 1 
Query:    1 CTEQYLMASEADLIGDERSRTAKYTPTIPSVIKHVGKLAKEYEPTAWEQHRECVAFREIYPRVQK-------LLNTNLTRLAEATSFDRLWGIPL 264
            C EQ++M+ +A L GD  S       T P   K +G+  + ++   WE+ RE +     Y +  +       LL T    LAEA+ FDR+WGI +
Sbjct:  622 CGEQFMMSEKAKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRVWGIGM 716
[Close]
BLAST of mRNA_S-dermatodea_contig1112.732.1 vs. uniprot
Match: A0A6H5K0K4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K4_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 5.270e-8
Identity = 29/95 (30.53%), Postives = 47/95 (49.47%), Query Frame = 1 
Query:    1 CTEQYLMASEADLIGDERSRTAKYTPTIPSVIKHVGKLAKEYEPTAWEQHRE-------CVAFREIYPRVQKLLNTNLTRLAEATSFDRLWGIPL 264
            C +Q++M+ +A L GD  S       T+P   K +G+  + ++   WE+  E       C  F + +     L+ T    LAEA+ FDR+WGI +
Sbjct:  827 CGDQFMMSEKAMLFGDMTSYDKIMAATVPKTHKFLGRNVRPFDHAEWERRHEEIVLTGSCAKFAQNHDMKHHLMETVTRLLAEASPFDRVWGIGM 921
[Close]
BLAST of mRNA_S-dermatodea_contig1112.732.1 vs. uniprot
Match: A0A6H5K6L2_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L2_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 5.290e-8
Identity = 31/95 (32.63%), Postives = 47/95 (49.47%), Query Frame = 1 
Query:    1 CTEQYLMASEADLIGDERSRTAKYTPTIPSVIKHVGKLAKEYEPTAWEQHRECVAFREIYPRVQK-------LLNTNLTRLAEATSFDRLWGIPL 264
            C EQ++M+ +A L GD  S       T P   K +G+  + ++   WE+ RE +     Y +  +       LL T    LAEA+ FDR+WGI +
Sbjct:  105 CGEQFMMSEKAKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAEASLFDRVWGIDM 199
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1112.732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYJ3_ECTSI3.490e-1035.79NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KMH8_9PHAE1.710e-934.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A8H4INB5_9PEZI5.520e-934.41NADAR domain-containing protein n=1 Tax=Botryospha... [more]
A0A6H5JRZ8_9PHAE2.810e-832.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JDD1_9PHAE5.110e-832.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFD5_9PHAE5.160e-832.63NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5K4L7_9PHAE5.210e-832.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8W4_9PHAE5.250e-832.63Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K0K4_9PHAE5.270e-830.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K6L2_9PHAE5.290e-832.63Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1112contigS-dermatodea_contig1112:2400..2666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size249
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924188.2753913-CDS-S-dermatodea_contig1112:2399..26481622924188.2753913-CDS-S-dermatodea_contig1112:2399..2648Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1112 2400..2648 -
1694079078.7943962-CDS-S-dermatodea_contig1112:2399..26481694079078.7943962-CDS-S-dermatodea_contig1112:2399..2648Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1112 2400..2648 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924188.2881463-UTR-S-dermatodea_contig1112:2648..26661622924188.2881463-UTR-S-dermatodea_contig1112:2648..2666Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1112 2649..2666 -
1694079078.8019702-UTR-S-dermatodea_contig1112:2648..26661694079078.8019702-UTR-S-dermatodea_contig1112:2648..2666Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1112 2649..2666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1112.732.1prot_S-dermatodea_contig1112.732.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1112 2400..2648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1112.732.1

>prot_S-dermatodea_contig1112.732.1 ID=prot_S-dermatodea_contig1112.732.1|Name=mRNA_S-dermatodea_contig1112.732.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp
MASEADLIGDERSRTAKYTPTIPSVIKHVGKLAKEYEPTAWEQHRECVAF
REIYPRVQKLLNTNLTRLAEATSFDRLWGIPL*
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mRNA from alignment at S-dermatodea_contig1112:2400..2666-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1112.732.1 ID=mRNA_S-dermatodea_contig1112.732.1|Name=mRNA_S-dermatodea_contig1112.732.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at S-dermatodea_contig1112:2400..2666- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGTACTGAACAATACCTAATGGCTTCCGAGGCCGATCTAATAGGCGACGA
ACGTTCCCGTACCGCTAAATACACACCGACGATTCCCAGTGTCATAAAAC
ACGTTGGAAAACTTGCCAAAGAGTACGAACCCACTGCTTGGGAACAACAC
CGTGAGTGTGTTGCCTTTCGCGAAATTTACCCCAGGGTACAAAAATTGCT
CAACACCAACTTGACACGTTTAGCCGAGGCCACCTCTTTTGATCGCCTGT
GGGGCATTCCTCTCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1112:2400..2666-

>mRNA_S-dermatodea_contig1112.732.1 ID=mRNA_S-dermatodea_contig1112.732.1|Name=mRNA_S-dermatodea_contig1112.732.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig1112:2400..2666- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTTCCGAGGCCGATCTAATAGGCGACGAACGTTCCCGTACCGCTAA
ATACACACCGACGATTCCCAGTGTCATAAAACACGTTGGAAAACTTGCCA
AAGAGTACGAACCCACTGCTTGGGAACAACACCGTGAGTGTGTTGCCTTT
CGCGAAATTTACCCCAGGGTACAAAAATTGCTCAACACCAACTTGACACG
TTTAGCCGAGGCCACCTCTTTTGATCGCCTGTGGGGCATTCCTCTCTGAA
TGGCTTCCGAGGCCGATCTAATAGGCGACGAACGTTCCCGTACCGCTAAA
TACACACCGACGATTCCCAGTGTCATAAAACACGTTGGAAAACTTGCCAA
AGAGTACGAACCCACTGCTTGGGAACAACACCGTGAGTGTGTTGCCTTTC
GCGAAATTTACCCCAGGGTACAAAAATTGCTCAACACCAACTTGACACGT
TTAGCCGAGGCCACCTCTTTTGATCGCCTGTGGGGCATTCCTCTCTGA
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