mRNA_S-dermatodea_contig11107.726.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11107.726.1
Unique NamemRNA_S-dermatodea_contig11107.726.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11107.726.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.780e-11
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 2 
Query:  179 WARNYHPTAMTLNFTAS*RV*GTFGVLKKGRIIHRRSSLVRAKTELEERIDEIALTSRLISS 364
            W+R + PT MTLN TA+ RV G F VLKKGRI++RR SLVR K ELE+RI    L S L+S+
Sbjct:  298 WSRCFFPTTMTLNMTATQRVEGMFSVLKKGRIVNRRCSLVRVKAELEKRIAGFTLASNLLST 359
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11107.726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JEJ0_9PHAE2.780e-1159.68SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11107contigS-dermatodea_contig11107:4528..5791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size624
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11107.726.1prot_S-dermatodea_contig11107.726.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11107 4687..5788 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924187.890077-UTR-S-dermatodea_contig11107:4527..46861622924187.890077-UTR-S-dermatodea_contig11107:4527..4686Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11107 4528..4686 -
1694079078.5216947-UTR-S-dermatodea_contig11107:4527..46861694079078.5216947-UTR-S-dermatodea_contig11107:4527..4686Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11107 4528..4686 -
1622924187.9493275-UTR-S-dermatodea_contig11107:5788..57911622924187.9493275-UTR-S-dermatodea_contig11107:5788..5791Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11107 5789..5791 -
1694079078.5776596-UTR-S-dermatodea_contig11107:5788..57911694079078.5776596-UTR-S-dermatodea_contig11107:5788..5791Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11107 5789..5791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924187.9015021-CDS-S-dermatodea_contig11107:4686..47971622924187.9015021-CDS-S-dermatodea_contig11107:4686..4797Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11107 4687..4797 -
1694079078.5328035-CDS-S-dermatodea_contig11107:4686..47971694079078.5328035-CDS-S-dermatodea_contig11107:4686..4797Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11107 4687..4797 -
1622924187.9135263-CDS-S-dermatodea_contig11107:5206..53951622924187.9135263-CDS-S-dermatodea_contig11107:5206..5395Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11107 5207..5395 -
1694079078.5426052-CDS-S-dermatodea_contig11107:5206..53951694079078.5426052-CDS-S-dermatodea_contig11107:5206..5395Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11107 5207..5395 -
1622924187.924886-CDS-S-dermatodea_contig11107:5517..55801622924187.924886-CDS-S-dermatodea_contig11107:5517..5580Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11107 5518..5580 -
1694079078.5522027-CDS-S-dermatodea_contig11107:5517..55801694079078.5522027-CDS-S-dermatodea_contig11107:5517..5580Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11107 5518..5580 -
1622924187.938742-CDS-S-dermatodea_contig11107:5689..57881622924187.938742-CDS-S-dermatodea_contig11107:5689..5788Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11107 5690..5788 -
1694079078.562025-CDS-S-dermatodea_contig11107:5689..57881694079078.562025-CDS-S-dermatodea_contig11107:5689..5788Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11107 5690..5788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11107.726.1

>prot_S-dermatodea_contig11107.726.1 ID=prot_S-dermatodea_contig11107.726.1|Name=mRNA_S-dermatodea_contig11107.726.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=154bp
MKNIKKKCHGALKGGARVLLRLVKTAAFAASENAVGDILTEAKRQVQDSK
CEEYAKEMLGAQLSPDGDDLKLHGFLACVGYLWRIEERPNHPQALVLGQS
EDGAGGTNRRNRSHISTDIIAESRAGAAYSTTTLPLGQGYADCLESIYWY
FNK*
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mRNA from alignment at S-dermatodea_contig11107:4528..5791-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11107.726.1 ID=mRNA_S-dermatodea_contig11107.726.1|Name=mRNA_S-dermatodea_contig11107.726.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1264bp|location=Sequence derived from alignment at S-dermatodea_contig11107:4528..5791- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATAATGAAGAACATCAAGAAAAAGTGTCATGGGGCGCTCAAGGGGGGGGC
GCGCGTCTTGCTTCGTTTGGTGAAGACAGCGGCTTTCGCCGCCTCTGAGA
ACGTGAGTTGCCTCATTGTCTACAAAACGCCATGCAATCCCGCTGCGTAA
GCTTGCGGACGTCTTTCTGACTTCGTGTGTCGCCTGATCGTCCCGACCTT
TCGGTTCTCAGGCGGTTGGAGACATTTTGACCGAAGCGAAGCGGCAAGTC
CAGGACTCGAAGTGTGAAGAATACGTGAGTCTTGCTGTTATCCTCTGGTC
TTGCATAGAAACTGTGTACTTTTTCACACGCGCTTGATCCTGGTAGCAGA
AAGCATCCTAGAACCTACAAACCATACATTTCCTGTTCGTTGACAGGCAA
AGGAAATGTTGGGCGCGCAACTATCACCCGACGGCGATGACCTTAAACTT
CACGGCTTCCTAGCGTGTGTAGGGTACCTTTGGCGTATTGAAGAAAGGCC
GAATCATCCACAGGCGCTCGTCCTTGGTCAGAGCGAAGACGGAGCTGGAG
GAACGAATCGACGAAATCGCTCTCACATCTCGACTGTGAGTACAGCAGGA
GTGTGACAGGTTTCAGACCAAGTGTACATATTCGCGGACCAATTCTATGT
AGCCCTCTTCACAATAGTGTATTTCGAATACATTTACTTACGCATGTATA
TTCAGTCTCTAAACGAGCGCGCTCATTCCGACAGGCTTTCGACGCAACGG
CCGAATCTTGGCTAAATCTATGTGGAAAACGACTTCCTCAAGTCCGTCGA
GCCTGTGCGAAAAAATGATATCGACCGGGTTCGGGCGAGCACGTACGAAA
AAACACGAGTTGAAAGAAAACAAGGAAAATTGTTGGTGGTATGAAGCCCT
TCGAGGAAATTTTTGAAGTGTCAATGTAAAACTGGAAGCAGACGCACTTA
ATCGCTTGTCAAACTGCACTCGCCGCGCCCAACGTTGCTTACAGGATATC
ATCGCCGAAAGTCGCGCGGGCGCCGCCTACTCCACAACCACACTTCCATT
AGGGCAAGGCTATGCAGATTGCCTGGAAAGCATATATTGGTATTTCAATA
AGTAAATTAGACGAGAACGGGAGTAGCGCAGCACCAAACAGCGGAACTGT
GAGTCTCTGAAGCTGACGAAGTCGGGGGACGGGAGCGAGGGAGGCTGTGT
GTTCGTCCTCGCTTTGTATACGGTTCTATTATTTTTTTCTCAAGTTCTTG
CCTCACCACCAGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11107:4528..5791-

>mRNA_S-dermatodea_contig11107.726.1 ID=mRNA_S-dermatodea_contig11107.726.1|Name=mRNA_S-dermatodea_contig11107.726.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at S-dermatodea_contig11107:4528..5791- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGAACATCAAGAAAAAGTGTCATGGGGCGCTCAAGGGGGGGGCGCG
CGTCTTGCTTCGTTTGGTGAAGACAGCGGCTTTCGCCGCCTCTGAGAACA
TGAAGAACATCAAGAAAAAGTGTCATGGGGCGCTCAAGGGGGGGGCGCGC
GTCTTGCTTCGTTTGGTGAAGACAGCGGCTTTCGCCGCCTCTGAGAACGC
GGTTGGAGACATTTTGACCGAAGCGAAGCGGCAAGTCCAGGACTCGAAGT
GTGAAGAATACGCGGTTGGAGACATTTTGACCGAAGCGAAGCGGCAAGTC
CAGGACTCGAAGTGTGAAGAATACGCAAAGGAAATGTTGGGCGCGCAACT
ATCACCCGACGGCGATGACCTTAAACTTCACGGCTTCCTAGCGTGTGTAG
GGTACCTTTGGCGTATTGAAGAAAGGCCGAATCATCCACAGGCGCTCGTC
CTTGGTCAGAGCGAAGACGGAGCTGGAGGAACGAATCGACGAAATCGCTC
TCACATCTCGACTGCAAAGGAAATGTTGGGCGCGCAACTATCACCCGACG
GCGATGACCTTAAACTTCACGGCTTCCTAGCGTGTGTAGGGTACCTTTGG
CGTATTGAAGAAAGGCCGAATCATCCACAGGCGCTCGTCCTTGGTCAGAG
CGAAGACGGAGCTGGAGGAACGAATCGACGAAATCGCTCTCACATCTCGA
CTGATATCATCGCCGAAAGTCGCGCGGGCGCCGCCTACTCCACAACCACA
CTTCCATTAGGGCAAGGCTATGCAGATTGCCTGGAAAGCATATATTGGTA
TTTCAATAAGTAAGATATCATCGCCGAAAGTCGCGCGGGCGCCGCCTACT
CCACAACCACACTTCCATTAGGGCAAGGCTATGCAGATTGCCTGGAAAGC
ATATATTGGTATTTCAATAAGTAA
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