mRNA_S-dermatodea_contig111.718.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig111.718.1
Unique NamemRNA_S-dermatodea_contig111.718.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig111.718.1 vs. uniprot
Match: D7G6A7_ECTSI (Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A7_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 6.300e-56
Identity = 84/103 (81.55%), Postives = 95/103 (92.23%), Query Frame = 1 
Query:    1 QVTLYEEFSKYADRSAVAQDVIFEITSKEHFDDVVSRAAGADETSPEGYEDAQGNWRIPHKLMMVEVHAGWCRVCKGLQPKLLKLVNKYPEVLCCKINKTQNE 309
            +VTLYEEFS+YADR +VAQ+VIFEITS EHF+DVVSRAAGADE   EGYEDAQGNWR+PHKLMMV++HAGWCRVCKGLQPKLLKL+ K+PEVLCCKINK  +E
Sbjct:   24 KVTLYEEFSRYADRRSVAQEVIFEITSAEHFEDVVSRAAGADEH--EGYEDAQGNWRVPHKLMMVQIHAGWCRVCKGLQPKLLKLITKHPEVLCCKINKAHHE 124
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BLAST of mRNA_S-dermatodea_contig111.718.1 vs. uniprot
Match: A0A835Z3K6_9STRA (Thioredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3K6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.170e-32
Identity = 56/100 (56.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:   10 LYEEFSKYADRSAVAQDVIFEITSKEHFDDVVSRAAGADETSPEGYEDAQGNWRIPHKLMMVEVHAGWCRVCKGLQPKLLKLVNKYPEVLCCKINKTQNE 309
            +YEE SKYAD  AVA D + EITS EH D +++ AA   E    GY D  GN R+PH+L+M++VHA WCR C G++PKLLKL  ++PEVLCCK+NK  +E
Sbjct:    1 MYEESSKYADPHAVATDCVVEITSNEHLDRILATAAQV-ENPDAGYVDHHGNQRLPHRLIMIQVHANWCRACIGVRPKLLKLCARHPEVLCCKLNKGNHE 99
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BLAST of mRNA_S-dermatodea_contig111.718.1 vs. uniprot
Match: A0A7R9U8D8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8D8_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 9.320e-20
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:   13 YEEFSKYADRSAVAQDVIFEITSKEHFDDVVSRAAGADETSPEGYEDAQGNWRIPHKLMMVEVHAGWCRVCKGLQPKLLKLVNKYPEVLCCKINKTQN 306
            YEE S YAD +A A + + ++TS+E FD ++S AAGA+  SP+         + PHK++M+ VHA WCR CK L  + LK+   +PEVLC K+N   N
Sbjct:   75 YEECSFYADATACAMETLIDVTSQEQFDFIISHAAGANPLSPD---------QKPHKMVMLMVHATWCRKCKYLMKQYLKVAKAHPEVLCLKLNLATN 163
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig111.718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6A7_ECTSI6.300e-5681.55Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A835Z3K6_9STRA2.170e-3256.00Thioredoxin n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7R9U8D8_9STRA9.320e-2044.90Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig111contigS-dermatodea_contig111:11796..12499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.4
Seed ortholog evalue2.2e-43
Seed eggNOG ortholog2880.D7G6A7
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
EggNOG free text desc.protein-disulfide reductase activity
EggNOG OGsKOG0908@1,KOG0908@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-10_001160.1
Exons2
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924187.2786453-CDS-S-dermatodea_contig111:11795..118671622924187.2786453-CDS-S-dermatodea_contig111:11795..11867Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig111 11796..11867 +
1694079077.96824-CDS-S-dermatodea_contig111:11795..118671694079077.96824-CDS-S-dermatodea_contig111:11795..11867Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig111 11796..11867 +
1622924187.287572-CDS-S-dermatodea_contig111:12250..124991622924187.287572-CDS-S-dermatodea_contig111:12250..12499Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig111 12251..12499 +
1694079077.9828289-CDS-S-dermatodea_contig111:12250..124991694079077.9828289-CDS-S-dermatodea_contig111:12250..12499Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig111 12251..12499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig111.718.1prot_S-dermatodea_contig111.718.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig111 11796..12499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig111.718.1

>prot_S-dermatodea_contig111.718.1 ID=prot_S-dermatodea_contig111.718.1|Name=mRNA_S-dermatodea_contig111.718.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=107bp
QVTLYEEFSKYADRSAVAQDVIFEITSKEHFDDVVSRAAGADETSPEGYE
DAQGNWRIPHKLMMVEVHAGWCRVCKGLQPKLLKLVNKYPEVLCCKINKT
QNEASL*
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mRNA from alignment at S-dermatodea_contig111:11796..12499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig111.718.1 ID=mRNA_S-dermatodea_contig111.718.1|Name=mRNA_S-dermatodea_contig111.718.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=704bp|location=Sequence derived from alignment at S-dermatodea_contig111:11796..12499+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGACGCTGTATGAAGAGTTTTCCAAGTATGCCGACAGATCGGCAGT
GGCACAAGATGTCATCTTCGAGGTAAGGCCCTCCTCGGTGGTGGTGGTGG
TGGGTGGCCTGCTCGACGCACGTAGAAGTAAAAGTCTGTGTTTTCAGACG
CCTGCCCCTGCTGCCCTCGAATTTTTCCACCTAATCACCATGACGCGAAA
TTTTCCACCTAATCACCATGACGCGGTTCGCAGTGCATTAATGCATAGTT
GCCTCTATGCACAGCTGAAAAAAAACGTTACCCAGCTTACTTGTCCGTGA
GGCGCGTTCAGCAGTAGATTATAGTGTCGCAATCCAAATTACTGCTCAGC
CACAAGCAGAAGAAACCAGAGCGCGGACTTCGGTGACCTGTCGTTGATGA
TGCTGTGCCGCGATCTGGTTCAAAGAGCGATTCAACTCCCCTAATGTCCC
ATCAGATCACGTCGAAGGAGCATTTCGATGACGTCGTCAGCAGGGCAGCA
GGGGCCGACGAAACCTCCCCAGAAGGGTACGAGGATGCGCAAGGAAACTG
GAGGATTCCGCACAAGCTCATGATGGTGGAGGTGCACGCCGGCTGGTGCA
GGGTTTGCAAGGGTTTGCAACCAAAGCTGCTTAAGCTTGTGAACAAGTAC
CCCGAGGTTCTCTGCTGCAAGATCAACAAGACGCAAAACGAGGCAAGTTT
ATAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig111:11796..12499+

>mRNA_S-dermatodea_contig111.718.1 ID=mRNA_S-dermatodea_contig111.718.1|Name=mRNA_S-dermatodea_contig111.718.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at S-dermatodea_contig111:11796..12499+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGACGCTGTATGAAGAGTTTTCCAAGTATGCCGACAGATCGGCAGT
GGCACAAGATGTCATCTTCGAGCAGGTGACGCTGTATGAAGAGTTTTCCA
AGTATGCCGACAGATCGGCAGTGGCACAAGATGTCATCTTCGAGATCACG
TCGAAGGAGCATTTCGATGACGTCGTCAGCAGGGCAGCAGGGGCCGACGA
AACCTCCCCAGAAGGGTACGAGGATGCGCAAGGAAACTGGAGGATTCCGC
ACAAGCTCATGATGGTGGAGGTGCACGCCGGCTGGTGCAGGGTTTGCAAG
GGTTTGCAACCAAAGCTGCTTAAGCTTGTGAACAAGTACCCCGAGGTTCT
CTGCTGCAAGATCAACAAGACGCAAAACGAGGCAAGTTTATAGATCACGT
CGAAGGAGCATTTCGATGACGTCGTCAGCAGGGCAGCAGGGGCCGACGAA
ACCTCCCCAGAAGGGTACGAGGATGCGCAAGGAAACTGGAGGATTCCGCA
CAAGCTCATGATGGTGGAGGTGCACGCCGGCTGGTGCAGGGTTTGCAAGG
GTTTGCAACCAAAGCTGCTTAAGCTTGTGAACAAGTACCCCGAGGTTCTC
TGCTGCAAGATCAACAAGACGCAAAACGAGGCAAGTTTATAG
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