mRNA_S-dermatodea_contig11092.714.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11092.714.1
Unique NamemRNA_S-dermatodea_contig11092.714.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11092.714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11092contigS-dermatodea_contig11092:853..1276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size413
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11092.714.1prot_S-dermatodea_contig11092.714.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11092 881..1155 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924186.9209313-UTR-S-dermatodea_contig11092:852..8801622924186.9209313-UTR-S-dermatodea_contig11092:852..880Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11092 853..880 +
1694079077.773422-UTR-S-dermatodea_contig11092:852..8801694079077.773422-UTR-S-dermatodea_contig11092:852..880Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11092 853..880 +
1622924186.949512-UTR-S-dermatodea_contig11092:1155..12761622924186.949512-UTR-S-dermatodea_contig11092:1155..1276Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11092 1156..1276 +
1694079077.8017783-UTR-S-dermatodea_contig11092:1155..12761694079077.8017783-UTR-S-dermatodea_contig11092:1155..1276Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11092 1156..1276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924186.930885-CDS-S-dermatodea_contig11092:880..10551622924186.930885-CDS-S-dermatodea_contig11092:880..1055Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11092 881..1055 +
1694079077.7821438-CDS-S-dermatodea_contig11092:880..10551694079077.7821438-CDS-S-dermatodea_contig11092:880..1055Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11092 881..1055 +
1622924186.9411128-CDS-S-dermatodea_contig11092:1066..11551622924186.9411128-CDS-S-dermatodea_contig11092:1066..1155Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11092 1067..1155 +
1694079077.7915177-CDS-S-dermatodea_contig11092:1066..11551694079077.7915177-CDS-S-dermatodea_contig11092:1066..1155Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11092 1067..1155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11092.714.1

>prot_S-dermatodea_contig11092.714.1 ID=prot_S-dermatodea_contig11092.714.1|Name=mRNA_S-dermatodea_contig11092.714.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=88bp
MVRTGQFSSRQIAAAEKTKKSYGAKCFFLANGFFNQESGLGPISFHELEK
PIEKRERGLGGPGIAPRIAWYIWWWGRGGPPSSGGSS*
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mRNA from alignment at S-dermatodea_contig11092:853..1276+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11092.714.1 ID=mRNA_S-dermatodea_contig11092.714.1|Name=mRNA_S-dermatodea_contig11092.714.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=424bp|location=Sequence derived from alignment at S-dermatodea_contig11092:853..1276+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTATGGTGGTGCTCATGAAATCTGAAAAATGGTGAGAACTGGTCAGTTCT
CATCACGACAAATCGCAGCAGCAGAAAAAACCAAGAAATCTTATGGAGCG
AAATGTTTTTTTTTGGCAAATGGCTTTTTTAACCAGGAATCTGGACTCGG
ACCAATTTCCTTTCACGAACTAGAAAAACCTATAGAGAAAAGGGAGAGAG
GACTATTAATATAATAGGAGGACCAGGGATCGCCCCCCGAATCGCTTGGT
ATATCTGGTGGTGGGGCCGCGGAGGGCCTCCTTCCTCCGGAGGGTCATCC
TGACAGAAGTAGCGTGCGAGCTGCTGTATTTATAATTGCTATCGTGTAAT
AGTACTACTGCTGTATTTCGGACGGTCTTGCATATACAGAGTATACACAA
CAGAGTAACAAAAAAAACAAGACG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11092:853..1276+

>mRNA_S-dermatodea_contig11092.714.1 ID=mRNA_S-dermatodea_contig11092.714.1|Name=mRNA_S-dermatodea_contig11092.714.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at S-dermatodea_contig11092:853..1276+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGAGAACTGGTCAGTTCTCATCACGACAAATCGCAGCAGCAGAAAA
AACCAAGAAATCTTATGGAGCGAAATGTTTTTTTTTGGCAAATGGCTTTT
TTAACCAGGAATCTGGACTCGGACCAATTTCCTTTCACGAACTAGAAAAA
CCTATAGAGAAAAGGGAGAGAGGACATGGTGAGAACTGGTCAGTTCTCAT
CACGACAAATCGCAGCAGCAGAAAAAACCAAGAAATCTTATGGAGCGAAA
TGTTTTTTTTTGGCAAATGGCTTTTTTAACCAGGAATCTGGACTCGGACC
AATTTCCTTTCACGAACTAGAAAAACCTATAGAGAAAAGGGAGAGAGGAC
TAGGAGGACCAGGGATCGCCCCCCGAATCGCTTGGTATATCTGGTGGTGG
GGCCGCGGAGGGCCTCCTTCCTCCGGAGGGTCATCCTGATAGGAGGACCA
GGGATCGCCCCCCGAATCGCTTGGTATATCTGGTGGTGGGGCCGCGGAGG
GCCTCCTTCCTCCGGAGGGTCATCCTGA
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